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Chillemi Giovanni 's Articles

[29402227] CoVaCS: a consensus variant calling system.

Chiara Matteo , Gioiosa Silvia , Chillemi Giovanni , D'Antonio Mattia , Flati Tiziano , Picardi Ernesto , Zambelli Federico , Horner David Stephen , Pesole Graziano , Castrignanò Tiziana ,

[29216377] PeachVar-DB: A Curated Collection of Genetic Variations for the Interactive Analysis of Peach Genome Data.

Cirilli Marco , Flati Tiziano , Gioiosa Silvia , Tagliaferri Ilario , Ciacciulli Angelo , Gao Zhongshan , Gattolin Stefano , Geuna Filippo , Maggi Francesco , Bottoni Paolo , Rossini Laura , Bassi Daniele , Castrignanò Tiziana , Chillemi Giovanni ,

[29048578] Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50).

Williams John L , Iamartino Daniela , Pruitt Kim D , Sonstegard Tad , Smith Timothy P L , Low Wai Yee , Biagini Tommaso , Bomba Lorenzo , Capomaccio Stefano , Castiglioni Bianca , Coletta Angelo , Corrado Federica , Ferré Fabrizio , Iannuzzi Leopoldo , Lawley Cynthia , Macciotta Nicolò , McClure Matthew , Mancini Giordano , Matassino Donato , Mazza Raffaele , Milanesi Marco , Moioli Bianca , Morandi Nicola , Ramunno Luigi , Peretti Vincenzo , Pilla Fabio , Ramelli Paola , Schroeder Steven , Strozzi Francesco , Thibaud-Nissen Francoise , Zicarelli Luigi , Ajmone-Marsan Paolo , Valentini Alessio , Chillemi Giovanni , Zimin Aleksey ,

[28334084] Molecular dynamics recipes for genome research.

Biagini Tommaso , Chillemi Giovanni , Mazzoccoli Gianluigi , Grottesi Alessandro , Fusilli Caterina , Capocefalo Daniele , Castellana Stefano , Vescovi Angelo Luigi , Mazza Tommaso ,

[28251415] A molecular dynamics simulation study decodes the early stage of the disassembly process abolishing the human SAMHD1 function.

Cardamone Francesca , Iacovelli Federico , Chillemi Giovanni , Falconi Mattia , Desideri Alessandro ,

[28072526] Type I DNA Topoisomerases.

Capranico Giovanni , Marinello Jessica , Chillemi Giovanni ,

[27959541] Conformational Dynamics of Lysine Methyltransferase Smyd2. Insights into the Different Substrate Crevice Characteristics of Smyd2 and Smyd3.

Chandramouli Balasubramanian , Chillemi Giovanni ,

[27884183] RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk.

Crisà Alessandra , Ferrè Fabrizio , Chillemi Giovanni , Moioli Bianca ,

[27666370] Biallelic Mutations in TBCD, Encoding the Tubulin Folding Cofactor D, Perturb Microtubule Dynamics and Cause Early-Onset Encephalopathy.

Flex Elisabetta , Niceta Marcello , Cecchetti Serena , Thiffault Isabelle , Au Margaret G , Capuano Alessandro , Piermarini Emanuela , Ivanova Anna A , Francis Joshua W , Chillemi Giovanni , Chandramouli Balasubramanian , Carpentieri Giovanna , Haaxma Charlotte A , Ciolfi Andrea , Pizzi Simone , Douglas Ganka V , Levine Kara , Sferra Antonella , Dentici Maria Lisa , Pfundt Rolph R , Le Pichon Jean-Baptiste , Farrow Emily , Baas Frank , Piemonte Fiorella , Dallapiccola Bruno , Graham John M , Saunders Carol J , Bertini Enrico , Kahn Richard A , Koolen David A , Tartaglia Marco ,

[27648926] Whole-exome sequencing and targeted gene sequencing provide insights into the role of PALB2 as a male breast cancer susceptibility gene.

Silvestri Valentina , Zelli Veronica , Valentini Virginia , Rizzolo Piera , Navazio Anna Sara , Coppa Anna , Agata Simona , Oliani Cristina , Barana Daniela , Castrignanò Tiziana , Viel Alessandra , Russo Antonio , Tibiletti Maria Grazia , Zanna Ines , Masala Giovanna , Cortesi Laura , Manoukian Siranoush , Azzollini Jacopo , Peissel Bernard , Bonanni Bernardo , Peterlongo Paolo , Radice Paolo , Palli Domenico , Giannini Giuseppe , Chillemi Giovanni , Montagna Marco , Ottini Laura ,

[27475372] Solvation structure of the halides from x-ray absorption spectroscopy.

Antalek Matthew , Pace Elisabetta , Hedman Britt , Hodgson Keith O , Chillemi Giovanni , Benfatto Maurizio , Sarangi Ritimukta , Frank Patrick ,

[27466182] SHOC2 subcellular shuttling requires the KEKE motif-rich region and N-terminal leucine-rich repeat domain and impacts on ERK signalling.

Motta Marialetizia , Chillemi Giovanni , Fodale Valentina , Cecchetti Serena , Coppola Simona , Stipo Silvia , Cordeddu Viviana , Macioce Pompeo , Gelb Bruce D , Tartaglia Marco ,

[27368975] Expanding the molecular diversity and phenotypic spectrum of glycerol 3-phosphate dehydrogenase 1 deficiency.

Dionisi-Vici Carlo , Shteyer Eyal , Niceta Marcello , Rizzo Cristiano , Pode-Shakked Ben , Chillemi Giovanni , Bruselles Alessandro , Semeraro Michela , Barel Ortal , Eyal Eran , Kol Nitzan , Haberman Yael , Lahad Avishai , Diomedi-Camassei Francesca , Marek-Yagel Dina , Rechavi Gideon , Tartaglia Marco , Anikster Yair ,

[27195961] Equilibrium between 5- and 6-Fold Coordination in the First Hydration Shell of Cu(II).

Chillemi Giovanni , Pace Elisabetta , D'Abramo Marco , Benfatto Maurizio ,

[27091942] Structural Evolution and Dynamics of the p53 Proteins.

Chillemi Giovanni , Kehrloesser Sebastian , Bernassola Francesca , Desideri Alessandro , Dötsch Volker , Levine Arnold J , Melino Gerry ,

[27085704] Smyd3 open & closed lock mechanism for substrate recruitment: The hinge motion of C-terminal domain inferred from μ-second molecular dynamics simulations.

Chandramouli Balasubramanian , Silvestri Valentina , Scarno Marco , Ottini Laura , Chillemi Giovanni ,

[26904102] Structural and Dynamic Characterization of the C313Y Mutation in Myostatin Dimeric Protein, Responsible for the "Double Muscle" Phenotype in Piedmontese Cattle.

Bongiorni Silvia , Valentini Alessio , Chillemi Giovanni ,

[26575774] MD and Docking Studies Reveal That the Functional Switch of CYFIP1 is Mediated by a Butterfly-like Motion.

Di Marino Daniele , Chillemi Giovanni , De Rubeis Silvia , Tramontano Anna , Achsel Tilmann , Bagni Claudia ,

[26404609] Molecular Signature of the Ebola Virus Associated with the Fishermen Community Outbreak in Aberdeen, Sierra Leone, in February 2015.

Capobianchi Maria R , Gruber Cesare E M , Carletti Fabrizio , Meschi Silvia , Castilletti Concetta , Vairo Francesco , Biava Mirella , Minosse Claudia , Strada Gino , Portella Gina , Miccio Rossella , Minardi Valeria , Rolla Luca , Kamara Abdul , Chillemi Giovanni , Desideri Alessandro , Di Caro Antonino , Ippolito Giuseppe ,

[26248686] Novel and known genetic variants for male breast cancer risk at 8q24.21, 9p21.3, 11q13.3 and 14q24.1: results from a multicenter study in Italy.

Silvestri Valentina , Rizzolo Piera , Scarnò Marco , Chillemi Giovanni , Navazio Anna Sara , Valentini Virginia , Zelli Veronica , Zanna Ines , Saieva Calogero , Masala Giovanna , Bianchi Simonetta , Manoukian Siranoush , Barile Monica , Pensotti Valeria , Peterlongo Paolo , Varesco Liliana , Tommasi Stefania , Russo Antonio , Giannini Giuseppe , Cortesi Laura , Viel Alessandra , Montagna Marco , Radice Paolo , Palli Domenico , Ottini Laura ,

[26089420] Molecular Characterization of the First Ebola Virus Isolated in Italy, from a Health Care Worker Repatriated from Sierra Leone.

Castilletti Concetta , Carletti Fabrizio , Gruber Cesare E M , Bordi Licia , Lalle Eleonora , Quartu Serena , Meschi Silvia , Lapa Daniele , Colavita Francesca , Chiappini Roberta , Mazzarelli Antonio , Marsella Patrizia , Petrosillo Nicola , Nicastri Emanuele , Chillemi Giovanni , Valentini Alessio , Desideri Alessandro , Di Caro Antonino , Ippolito Giuseppe , Capobianchi Maria R ,

[25056319] Simulations of DNA topoisomerase 1B bound to supercoiled DNA reveal changes in the flexibility pattern of the enzyme and a secondary protein-DNA binding site.

D'Annessa Ilda , Coletta Andrea , Sutthibutpong Thana , Mitchell Jonathan , Chillemi Giovanni , Harris Sarah , Desideri Alessandro ,

[24860596] Modeling conformational transitions in kinases by molecular dynamics simulations: achievements, difficulties, and open challenges.

D'Abramo Marco , Besker Neva , Chillemi Giovanni , Grottesi Alessandro ,

[24583235] Structural dynamics of V3 loop in a trimeric ambiance, a molecular dynamics study on gp120-CD4 trimeric mimic.

Chandramouli Balasubramanian , Chillemi Giovanni , Desideri Alessandro ,

[24442315] Signatures of selection in five Italian cattle breeds detected by a 54K SNP panel.

Mancini Giordano , Gargani Maria , Chillemi Giovanni , Nicolazzi Ezequiel Luis , Marsan Paolo Ajmone , Valentini Alessio , Pariset Lorraine ,

[24086299] Solvent dependency of the UV-Vis spectrum of indenoisoquinolines: role of keto-oxygens as polarity interaction probes.

Coletta Andrea , Castelli Silvia , Chillemi Giovanni , Sanna Nico , Cushman Mark , Pommier Yves , Desideri Alessandro ,

[23999093] Antisense transcripts enhanced by camptothecin at divergent CpG-island promoters associated with bursts of topoisomerase I-DNA cleavage complex and R-loop formation.

Marinello Jessica , Chillemi Giovanni , Bueno Susana , Manzo Stefano G , Capranico Giovanni ,

[23974096] Molecular dynamics of the full-length p53 monomer.

Chillemi Giovanni , Davidovich Pavel , D'Abramo Marco , Mametnabiev Tazhir , Garabadzhiu Alexander Vasilievich , Desideri Alessandro , Melino Gerry ,

[23782433] Microarray gene expression profiling of neural tissues in bovine spastic paresis.

Pariset Lorraine , Bongiorni Silvia , Bueno Susana , Gruber Cesare E M , Prosperini Gianluca , Chillemi Giovanni , Bicorgna Silvia , Gentile Arcangelo , Valentini Alessio ,

[23442185] Massive screening of copy number population-scale variation in Bos taurus genome.

Cicconardi Francesco , Chillemi Giovanni , Tramontano Anna , Marchitelli Cinzia , Valentini Alessio , Ajmone-Marsan Paolo , Nardone Alessandro ,

[23236483] Binding of an Indenoisoquinoline to the topoisomerase-DNA complex induces reduction of linker mobility and strengthening of protein-DNA interaction.

Mancini Giordano , D'Annessa Ilda , Coletta Andrea , Chillemi Giovanni , Pommier Yves , Cushman Mark , Desideri Alessandro ,

[23226511] Identification of a short region on chromosome 6 affecting direct calving ease in Piedmontese cattle breed.

Bongiorni Silvia , Mancini Giordano , Chillemi Giovanni , Pariset Lorraine , Valentini Alessio ,

[22876913] Structural dynamics of V3 loop with different electrostatics: implications on co-receptor recognition: a molecular dynamics study of HIV gp120.

Chandramouli Balasubramanian , Chillemi Giovanni , Giombini Emanuela , Capobianchi Maria R , Rozera Gabriella , Desideri Alessandro ,

[22853323] X-ray absorption study of the solvation structure of Cu2+ in methanol and dimethyl sulfoxide.

Zitolo Andrea , Chillemi Giovanni , D'Angelo Paola ,

[22788868] Effects of the pathological Q212P mutation on human prion protein non-octarepeat copper-binding site.

D'Angelo Paola , Della Longa Stefano , Arcovito Alessandro , Mancini Giordano , Zitolo Andrea , Chillemi Giovanni , Giachin Gabriele , Legname Giuseppe , Benetti Federico ,

[22686457] Carbon monoxide binding to the heme group at the dimeric interface modulates structure and copper accessibility in the Cu,Zn superoxide dismutase from Haemophilus ducreyi: in silico and in vitro evidences.

Chillemi Giovanni , De Santis Serena , Falconi Mattia , Mancini Giordano , Migliorati Valentina , Battistoni Andrea , Pacello Francesca , Desideri Alessandro , D'Angelo Paola ,

[22315664] Role of Flexibility in Protein-DNA-Drug Recognition: The Case of Asp677Gly-Val703Ile Topoisomerase Mutant Hypersensitive to Camptothecin.

D'Annessa Ilda , Tesauro Cinzia , Fiorani Paola , Chillemi Giovanni , Castelli Silvia , Vassallo Oscar , Capranico Giovanni , Desideri Alessandro ,

[22292949] Importance of V3 loop flexibility and net charge in the context of co-receptor recognition. A molecular dynamics study on HIV gp120.

Chandramouli Balasubramanian , Chillemi Giovanni , Abbate Isabella , Capobianchi Maria R , Rozera Gabriella , Desideri Alessandro ,

[22143812] Assembly and characterization of pandemic influenza A H1N1 genome in nasopharyngeal swabs using high-throughput pyrosequencing.

Bartolini Barbara , Chillemi Giovanni , Abbate Isabella , Bruselles Alessandro , Rozera Gabriella , Castrignanò Tiziana , Paoletti Daniele , Picardi Ernesto , Desideri Alessandro , Pesole Graziano , Capobianchi Maria R ,

[21800865] On the solvation of the Zn2+ ion in methanol: a combined quantum mechanics, molecular dynamics, and EXAFS approach.

Migliorati Valentina , Chillemi Giovanni , D'Angelo Paola ,

[21504174] Effect of the Zn2+ and Hg2+ ions on the structure of liquid water.

Migliorati Valentina , Mancini Giordano , Chillemi Giovanni , Zitolo Andrea , D'Angelo Paola ,

[21495628] Revised ionic radii of lanthanoid(III) ions in aqueous solution.

D'Angelo Paola , Zitolo Andrea , Migliorati Valentina , Chillemi Giovanni , Duvail Magali , Vitorge Pierre , Abadie Sacha , Spezia Riccardo ,

[20919711] Dynamic investigation of protein metal active sites: interplay of XANES and molecular dynamics simulations.

D'Angelo Paola , Della Longa Stefano , Arcovito Alessandro , Anselmi Massimiliano , Di Nola Alfredo , Chillemi Giovanni ,

[20846364] Hif1α down-regulation is associated with transposition of great arteries in mice treated with a retinoic acid antagonist.

Amati Francesca , Diano Laura , Campagnolo Luisa , Vecchione Lucia , Cipollone Daria , Bueno Susana , Prosperini Gianluca , Desideri Alessandro , Siracusa Gregorio , Chillemi Giovanni , Marino Bruno , Novelli Giuseppe ,

[20688168] ADP/ATP mitochondrial carrier MD simulations to shed light on the structural-dynamical events that, after an additional mutation, restore the function in a pathological single mutant.

Di Marino Daniele , Oteri Francesco , Morozzo Della Rocca Blasco , Chillemi Giovanni , Falconi Mattia ,

[20550156] Assignment of UV-vis spectrum of (3,3')-diindolylmethane, a Leishmania donovani topoisomerase IB inhibitor and a candidate DNA minor groove binder.

Coletta Andrea , Morozzo della Rocca Blasco , Jaisankar Parasuraman , Majumder Hemanta K , Chillemi Giovanni , Sanna Nico , Desideri Alessandro ,

[20532182] Structural and dynamical effects induced by the anticancer drug topotecan on the human topoisomerase I - DNA complex.

Mancini Giordano , D'Annessa Ilda , Coletta Andrea , Sanna Nico , Chillemi Giovanni , Desideri Alessandro ,

[20438088] Solvent effects on the valence UV-vis absorption spectra of topotecan anticancer drug in aqueous solution at room temperature: a nanoseconds time-scale TD-DFT/MD computational study.

Zazza Costantino , Coletta Andrea , Sanna Nico , Chillemi Giovanni , Mancini Giordano , Desideri Alessandro ,

[19907212] Archived HIV-1 minority variants detected by ultra-deep pyrosequencing in provirus may be fully replication competent.

Rozera Gabriella , Abbate Isabella , Bruselles Alessandro , Vlassi Chrysoula , D'Offizi Gianpiero , Narciso Pasquale , Chillemi Giovanni , Prosperi Mattia , Ippolito Giuseppe , Capobianchi Maria R ,

[19883377] Erybraedin C, a natural compound from the plant Bituminaria bituminosa, inhibits both the cleavage and religation activities of human topoisomerase I.

Tesauro Cinzia , Fiorani Paola , D'Annessa Ilda , Chillemi Giovanni , Turchi Gino , Desideri Alessandro ,

 

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