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30S ribosomal protein S5 (BS5)

 RS5_BACSU               Reviewed;         166 AA.
P21467;
01-MAY-1991, integrated into UniProtKB/Swiss-Prot.
01-NOV-1995, sequence version 3.
22-NOV-2017, entry version 134.
RecName: Full=30S ribosomal protein S5;
Short=BS5;
Name=rpsE; Synonyms=spcA; OrderedLocusNames=BSU01330;
Bacillus subtilis (strain 168).
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
NCBI_TaxID=224308;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=168 / Marburg / ATCC 6051 / DSM 10 / JCM 1465 / NBRC 13719 /
NCIMB 3610 / VKM B-501;
PubMed=8635744; DOI=10.1016/0378-1119(95)00757-1;
Suh J.-W., Boylan S.A., Oh S.H., Price C.W.;
"Genetic and transcriptional organization of the Bacillus subtilis
spc-alpha region.";
Gene 169:17-23(1996).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANT SPECTINOMYCIN
RESISTANT.
STRAIN=1A241;
PubMed=2139212; DOI=10.1093/nar/18.6.1647;
Yoshikawa H., Doi R.H.;
"Sequence of the Bacillus subtilis spectinomycin resistance gene
region.";
Nucleic Acids Res. 18:1647-1647(1990).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=168;
PubMed=9384377; DOI=10.1038/36786;
Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G.,
Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S.,
Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S.,
Brouillet S., Bruschi C.V., Caldwell B., Capuano V., Carter N.M.,
Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A.,
Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T.,
Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D.,
Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N.,
Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G.,
Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A.,
Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M.,
Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M.,
Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S.,
Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G.,
Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B.,
Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R.,
Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P.,
Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H.,
Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P.,
Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F.,
Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H.,
Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
Yoshikawa H., Danchin A.;
"The complete genome sequence of the Gram-positive bacterium Bacillus
subtilis.";
Nature 390:249-256(1997).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-39.
STRAIN=168;
PubMed=8969501; DOI=10.1099/13500872-142-11-3039;
Yasumoto K., Liu H., Jeong S.M., Ohashi Y., Kakinuma S., Tanaka K.,
Kawamura F., Yoshikawa H., Takahashi H.;
"Sequence analysis of a 50 kb region between spo0H and rrnH on the
Bacillus subtilis chromosome.";
Microbiology 142:3039-3046(1996).
[5]
PROTEIN SEQUENCE OF 1-40.
PubMed=6806564; DOI=10.1007/BF00330792;
Higo K., Otaka E., Osawa S.;
"Purification and characterization of 30S ribosomal proteins from
Bacillus subtilis: correlation to Escherichia coli 30S proteins.";
Mol. Gen. Genet. 185:239-244(1982).
[6]
PROTEIN SEQUENCE OF 1-46, AND VARIANTS SPECTINOMYCIN RESISTANT BPSC 31
AND BPSC 61.
STRAIN=ATCC 6633 / PCI 219 / NRS 231;
PubMed=6211592; DOI=10.1007/BF00330787;
Higo K., Itoh T., Osawa S.;
"Alteration of ribosomal protein S5 from two spectinomycin-resistant
mutants of Bacillus subtilis: deletion of one amino acid residue.";
Mol. Gen. Genet. 185:205-206(1982).
[7]
CHARACTERIZATION, AND VARIANTS.
STRAIN=168;
PubMed=11489846; DOI=10.1128/JB.183.17.4958-4963.2001;
Inaoka T., Kasai K., Ochi K.;
"Construction of an in vivo nonsense readthrough assay system and
functional analysis of ribosomal proteins S12, S4, and S5 in Bacillus
subtilis.";
J. Bacteriol. 183:4958-4963(2001).
-!- FUNCTION: With S4 and S12 plays an important role in translational
accuracy; many suppressors of streptomycin-dependent mutants of
protein S12 are found in this protein, some but not all of which
decrease translational accuracy (ram, ribosomal ambiguity
mutations).
-!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts proteins S4
and S8 (By similarity). {ECO:0000250}.
-!- DOMAIN: The N-terminal domain interacts with the head of the 30S
subunit; the C-terminal domain interacts with the body and
contacts protein S4. The interaction surface between S4 and S5 is
involved in control of translational fidelity.
-!- MISCELLANEOUS: Altered S5 proteins have been identified in a
number of mutants. Some mutations in S5 have been shown to
increase translational error frequencies.
-!- SIMILARITY: Belongs to the universal ribosomal protein uS5 family.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAB59115.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; L47971; AAB06816.1; -; Genomic_DNA.
EMBL; M31102; AAB59115.1; ALT_INIT; Genomic_DNA.
EMBL; AL009126; CAB11909.1; -; Genomic_DNA.
EMBL; D64125; BAA20856.1; -; Genomic_DNA.
PIR; D69699; R3BS5S.
RefSeq; NP_388014.1; NC_000964.3.
RefSeq; WP_003328273.1; NZ_JNCM01000029.1.
PDB; 3J9W; EM; 3.90 A; AE=1-166.
PDB; 5NJT; EM; 3.80 A; E=2-166.
PDBsum; 3J9W; -.
PDBsum; 5NJT; -.
ProteinModelPortal; P21467; -.
SMR; P21467; -.
STRING; 224308.Bsubs1_010100000685; -.
PaxDb; P21467; -.
PRIDE; P21467; -.
EnsemblBacteria; CAB11909; CAB11909; BSU01330.
GeneID; 33964713; -.
GeneID; 938012; -.
KEGG; bsu:BSU01330; -.
PATRIC; fig|224308.179.peg.136; -.
eggNOG; ENOG4108RA9; Bacteria.
eggNOG; COG0098; LUCA.
HOGENOM; HOG000072595; -.
InParanoid; P21467; -.
KO; K02988; -.
OMA; KRGCGSW; -.
PhylomeDB; P21467; -.
BioCyc; BSUB:BSU01330-MONOMER; -.
PRO; PR:P21467; -.
Proteomes; UP000001570; Chromosome.
GO; GO:0022627; C:cytosolic small ribosomal subunit; IBA:GO_Central.
GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
GO; GO:0046677; P:response to antibiotic; IEA:UniProtKB-KW.
GO; GO:0006412; P:translation; IBA:GO_Central.
Gene3D; 3.30.230.10; -; 1.
HAMAP; MF_01307_B; Ribosomal_S5_B; 1.
InterPro; IPR000851; Ribosomal_S5.
InterPro; IPR005712; Ribosomal_S5_bac-type.
InterPro; IPR005324; Ribosomal_S5_C.
InterPro; IPR020568; Ribosomal_S5_D2-typ_fold.
InterPro; IPR014721; Ribosomal_S5_D2-typ_fold_subgr.
InterPro; IPR013810; Ribosomal_S5_N.
InterPro; IPR018192; Ribosomal_S5_N_CS.
PANTHER; PTHR13718; PTHR13718; 1.
Pfam; PF00333; Ribosomal_S5; 1.
Pfam; PF03719; Ribosomal_S5_C; 1.
SUPFAM; SSF54211; SSF54211; 1.
TIGRFAMs; TIGR01021; rpsE_bact; 1.
PROSITE; PS00585; RIBOSOMAL_S5; 1.
PROSITE; PS50881; S5_DSRBD; 1.
1: Evidence at protein level;
3D-structure; Antibiotic resistance; Complete proteome;
Direct protein sequencing; Reference proteome; Ribonucleoprotein;
Ribosomal protein; RNA-binding; rRNA-binding.
CHAIN 1 166 30S ribosomal protein S5.
/FTId=PRO_0000131470.
DOMAIN 11 74 S5 DRBM.
VARIANT 24 26 Missing (in 1A241; spectinomycin
resistant).
VARIANT 26 26 K -> I (in BSPC 111; spectinomycin
resistant).
VARIANT 28 28 G -> V (in rpsE1; spectinomycin
restistant, not a ram mutant).
VARIANT 30 30 Missing (in BPSC 31 and BPSC 61;
spectinomycin resistant).
VARIANT 104 104 G -> R (in rpsE9; suppresses S12 mutation
K55D. Lethal in the absence of the S12
mutation).
VARIANT 112 112 R -> C (in rpsE8; suppresses S12 mutant
K55D. RspE8 is lethal in the absence of
the S12 mutation).
VARIANT 112 112 R -> H (in rpsE7; suppresses S12 mutant
K55D. A ram mutation).
SEQUENCE 166 AA; 17623 MW; 5D96AA53FF892AF4 CRC64;
MRRIDPSKLE LEERLVTVNR VAKVVKGGRR FRFAALVVVG DKNGHVGFGT GKAQEVPEAI
RKAVEDAKKN LIEVPMVGTT IPHEIIGRFG AGNILLKPAS EGTGVIAGGP VRAVLELAGV
ADILSKSLGS NTPINMIRAT LQGLSELKRA EDVAKLRGKS VEELLG


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