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39S ribosomal protein L46, mitochondrial (L46mt) (MRP-L46) (Mitochondrial large ribosomal subunit protein mL46) (P2ECSL)

 RM46_HUMAN              Reviewed;         279 AA.
Q9H2W6; B2RD75; Q9HBU8;
27-SEP-2004, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 1.
12-SEP-2018, entry version 143.
RecName: Full=39S ribosomal protein L46, mitochondrial;
Short=L46mt;
Short=MRP-L46;
AltName: Full=Mitochondrial large ribosomal subunit protein mL46 {ECO:0000303|PubMed:25278503};
AltName: Full=P2ECSL;
Flags: Precursor;
Name=MRPL46; Synonyms=C15orf4, LIECG2;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606 {ECO:0000312|EMBL:AAG43507.1};
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=11761714; DOI=10.3109/10425170109047561;
Carim-Todd L., Sumoy L., Andreu N., Estivill X., Escarceller M.;
"Cloning, mapping and expression analysis of C15orf4, a novel human
gene with homology to the yeast mitochondrial ribosomal protein Ym130
gene.";
DNA Seq. 12:91-96(2001).
[2] {ECO:0000305, ECO:0000312|EMBL:AAG43507.1}
NUCLEOTIDE SEQUENCE [MRNA].
Zhang K.M., Chen B.S.;
"A novel gene identified in vascular endothelial cells.";
Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Brain;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[4] {ECO:0000305, ECO:0000312|EMBL:AAG43507.1}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Skeletal muscle;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
IDENTIFICATION, AND SUBUNIT.
PubMed=11551941; DOI=10.1074/jbc.M106510200;
Koc E.C., Burkhart W., Blackburn K., Moyer M.B., Schlatzer D.M.,
Moseley A., Spremulli L.L.;
"The large subunit of the mammalian mitochondrial ribosome. Analysis
of the complement of ribosomal proteins present.";
J. Biol. Chem. 276:43958-43969(2001).
[7]
ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-230, AND IDENTIFICATION BY
MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=19608861; DOI=10.1126/science.1175371;
Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M.,
Walther T.C., Olsen J.V., Mann M.;
"Lysine acetylation targets protein complexes and co-regulates major
cellular functions.";
Science 325:834-840(2009).
[8]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21269460; DOI=10.1186/1752-0509-5-17;
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P.,
Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.;
"Initial characterization of the human central proteome.";
BMC Syst. Biol. 5:17-17(2011).
[9]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Erythroleukemia;
PubMed=23186163; DOI=10.1021/pr300630k;
Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J.,
Mohammed S.;
"Toward a comprehensive characterization of a human cancer cell
phosphoproteome.";
J. Proteome Res. 12:260-271(2013).
[10]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=25944712; DOI=10.1002/pmic.201400617;
Vaca Jacome A.S., Rabilloud T., Schaeffer-Reiss C., Rompais M.,
Ayoub D., Lane L., Bairoch A., Van Dorsselaer A., Carapito C.;
"N-terminome analysis of the human mitochondrial proteome.";
Proteomics 15:2519-2524(2015).
[11] {ECO:0000244|PDB:3J7Y}
STRUCTURE BY ELECTRON MICROSCOPY (3.40 ANGSTROMS), SUBCELLULAR
LOCATION, AND SUBUNIT.
PubMed=25278503; DOI=10.1126/science.1258026;
Brown A., Amunts A., Bai X.C., Sugimoto Y., Edwards P.C.,
Murshudov G., Scheres S.H., Ramakrishnan V.;
"Structure of the large ribosomal subunit from human mitochondria.";
Science 346:718-722(2014).
[12] {ECO:0000244|PDB:3J9M}
STRUCTURE BY ELECTRON MICROSCOPY (3.50 ANGSTROMS), SUBCELLULAR
LOCATION, AND SUBUNIT.
PubMed=25838379; DOI=10.1126/science.aaa1193;
Amunts A., Brown A., Toots J., Scheres S.H., Ramakrishnan V.;
"Ribosome. The structure of the human mitochondrial ribosome.";
Science 348:95-98(2015).
[13] {ECO:0000244|PDB:5OOL, ECO:0000244|PDB:5OOM}
STRUCTURE BY ELECTRON MICROSCOPY (3.03 ANGSTROMS), SUBCELLULAR
LOCATION, AND SUBUNIT.
PubMed=28892042; DOI=10.1038/nsmb.3464;
Brown A., Rathore S., Kimanius D., Aibara S., Bai X.C., Rorbach J.,
Amunts A., Ramakrishnan V.;
"Structures of the human mitochondrial ribosome in native states of
assembly.";
Nat. Struct. Mol. Biol. 24:866-869(2017).
-!- SUBUNIT: Component of the mitochondrial large ribosomal subunit
(mt-LSU) (PubMed:28892042, PubMed:25838379, PubMed:25278503).
Mature mammalian 55S mitochondrial ribosomes consist of a small
(28S) and a large (39S) subunit. The 28S small subunit contains a
12S ribosomal RNA (12S mt-rRNA) and 30 different proteins. The 39S
large subunit contains a 16S rRNA (16S mt-rRNA), a copy of
mitochondrial valine transfer RNA (mt-tRNA(Val)), which plays an
integral structural role, and 52 different proteins. mL46 is
located at the central protuberance. {ECO:0000269|PubMed:11551941,
ECO:0000269|PubMed:25278503, ECO:0000269|PubMed:25838379,
ECO:0000269|PubMed:28892042}.
-!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:25278503,
ECO:0000269|PubMed:25838379, ECO:0000269|PubMed:28892042}.
-!- SIMILARITY: Belongs to the mitochondrion-specific ribosomal
protein mL46 family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAG33698.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AF210056; AAG43507.1; -; mRNA.
EMBL; AF205435; AAG33698.1; ALT_INIT; mRNA.
EMBL; AK315434; BAG37822.1; -; mRNA.
EMBL; CH471101; EAX01995.1; -; Genomic_DNA.
EMBL; BC017883; AAH17883.1; -; mRNA.
CCDS; CCDS10341.1; -.
RefSeq; NP_071446.2; NM_022163.3.
UniGene; Hs.534261; -.
PDB; 3J7Y; EM; 3.40 A; e=1-279.
PDB; 3J9M; EM; 3.50 A; e=1-279.
PDB; 5OOL; EM; 3.06 A; e=1-279.
PDB; 5OOM; EM; 3.03 A; e=1-279.
PDBsum; 3J7Y; -.
PDBsum; 3J9M; -.
PDBsum; 5OOL; -.
PDBsum; 5OOM; -.
ProteinModelPortal; Q9H2W6; -.
SMR; Q9H2W6; -.
BioGrid; 117757; 52.
CORUM; Q9H2W6; -.
IntAct; Q9H2W6; 19.
MINT; Q9H2W6; -.
STRING; 9606.ENSP00000312311; -.
iPTMnet; Q9H2W6; -.
PhosphoSitePlus; Q9H2W6; -.
SwissPalm; Q9H2W6; -.
BioMuta; MRPL46; -.
DMDM; 52783325; -.
EPD; Q9H2W6; -.
MaxQB; Q9H2W6; -.
PaxDb; Q9H2W6; -.
PeptideAtlas; Q9H2W6; -.
PRIDE; Q9H2W6; -.
ProteomicsDB; 80610; -.
DNASU; 26589; -.
Ensembl; ENST00000312475; ENSP00000312311; ENSG00000259494.
GeneID; 26589; -.
KEGG; hsa:26589; -.
UCSC; uc002bmj.3; human.
CTD; 26589; -.
DisGeNET; 26589; -.
EuPathDB; HostDB:ENSG00000259494.1; -.
GeneCards; MRPL46; -.
H-InvDB; HIX0012555; -.
HGNC; HGNC:1192; MRPL46.
HPA; HPA050166; -.
MIM; 611851; gene.
neXtProt; NX_Q9H2W6; -.
PharmGKB; PA30978; -.
eggNOG; KOG4548; Eukaryota.
eggNOG; ENOG4111HSF; LUCA.
GeneTree; ENSGT00390000015400; -.
HOGENOM; HOG000047532; -.
HOVERGEN; HBG057426; -.
InParanoid; Q9H2W6; -.
KO; K17427; -.
OMA; EKWDLYA; -.
OrthoDB; EOG091G0CQP; -.
PhylomeDB; Q9H2W6; -.
Reactome; R-HSA-5368286; Mitochondrial translation initiation.
Reactome; R-HSA-5389840; Mitochondrial translation elongation.
Reactome; R-HSA-5419276; Mitochondrial translation termination.
GenomeRNAi; 26589; -.
PRO; PR:Q9H2W6; -.
Proteomes; UP000005640; Chromosome 15.
Bgee; ENSG00000259494; Expressed in 91 organ(s), highest expression level in right adrenal gland.
CleanEx; HS_MRPL46; -.
ExpressionAtlas; Q9H2W6; baseline and differential.
Genevisible; Q9H2W6; HS.
GO; GO:0030054; C:cell junction; IDA:HPA.
GO; GO:0005743; C:mitochondrial inner membrane; TAS:Reactome.
GO; GO:0005762; C:mitochondrial large ribosomal subunit; IDA:UniProtKB.
GO; GO:0005739; C:mitochondrion; IDA:UniProtKB.
GO; GO:0005654; C:nucleoplasm; IDA:HPA.
GO; GO:0016787; F:hydrolase activity; IEA:InterPro.
GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
GO; GO:0070125; P:mitochondrial translational elongation; TAS:Reactome.
GO; GO:0070126; P:mitochondrial translational termination; TAS:Reactome.
CDD; cd04661; MRP_L46; 1.
InterPro; IPR033650; MRP_L46_NUDIX.
InterPro; IPR015797; NUDIX_hydrolase-like_dom_sf.
InterPro; IPR021757; Ribosomal_L46.
Pfam; PF11788; MRP-L46; 1.
SUPFAM; SSF55811; SSF55811; 1.
1: Evidence at protein level;
3D-structure; Acetylation; Complete proteome; Mitochondrion;
Polymorphism; Reference proteome; Ribonucleoprotein;
Ribosomal protein; Transit peptide.
TRANSIT 1 ? Mitochondrion. {ECO:0000255}.
CHAIN ? 279 39S ribosomal protein L46, mitochondrial.
/FTId=PRO_0000030576.
MOD_RES 230 230 N6-acetyllysine.
{ECO:0000244|PubMed:19608861}.
VARIANT 106 106 H -> Y (in dbSNP:rs16941888).
/FTId=VAR_052046.
CONFLICT 197 197 E -> K (in Ref. 2; AAG33698).
{ECO:0000305}.
STRAND 45 50 {ECO:0000244|PDB:5OOM}.
HELIX 65 80 {ECO:0000244|PDB:5OOM}.
HELIX 86 89 {ECO:0000244|PDB:5OOM}.
HELIX 92 103 {ECO:0000244|PDB:5OOM}.
HELIX 117 130 {ECO:0000244|PDB:5OOM}.
TURN 140 142 {ECO:0000244|PDB:5OOM}.
STRAND 146 148 {ECO:0000244|PDB:3J7Y}.
STRAND 153 155 {ECO:0000244|PDB:5OOM}.
STRAND 161 164 {ECO:0000244|PDB:5OOM}.
TURN 165 167 {ECO:0000244|PDB:3J7Y}.
STRAND 169 173 {ECO:0000244|PDB:5OOM}.
STRAND 175 177 {ECO:0000244|PDB:5OOM}.
HELIX 184 195 {ECO:0000244|PDB:5OOM}.
STRAND 198 203 {ECO:0000244|PDB:5OOM}.
STRAND 211 213 {ECO:0000244|PDB:5OOM}.
STRAND 220 223 {ECO:0000244|PDB:3J7Y}.
STRAND 228 233 {ECO:0000244|PDB:5OOM}.
STRAND 237 242 {ECO:0000244|PDB:5OOM}.
STRAND 252 255 {ECO:0000244|PDB:3J7Y}.
STRAND 257 259 {ECO:0000244|PDB:3J7Y}.
HELIX 260 263 {ECO:0000244|PDB:5OOM}.
TURN 267 271 {ECO:0000244|PDB:5OOM}.
HELIX 272 275 {ECO:0000244|PDB:5OOL}.
SEQUENCE 279 AA; 31705 MW; EDA966D758715378 CRC64;
MAAPVRRTLL GVAGGWRRFE RLWAGSLSSR SLALAAAPSS NGSPWRLLGA LCLQRPPVVS
KPLTPLQEEM ASLLQQIEIE RSLYSDHELR ALDENQRLAK KKADLHDEED EQDILLAQDL
EDMWEQKFLQ FKLGARITEA DEKNDRTSLN RKLDRNLVLL VREKFGDQDV WILPQAEWQP
GETLRGTAER TLATLSENNM EAKFLGNAPC GHYTFKFPQA MRTESNLGAK VFFFKALLLT
GDFSQAGNKG HHVWVTKDEL GDYLKPKYLA QVRRFVSDL


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