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4-hydroxyphenylpyruvate 3-dimethylallyltransferase (EC 2.5.1.111) (4HPP 3-dimethylallyltransferase) (Aromatic prenyltransferase CloQ) (Clorobiocin biosynthesis protein Q)
CLOQ_STRRC Reviewed; 324 AA.
Q8GHB2;
16-OCT-2013, integrated into UniProtKB/Swiss-Prot.
01-MAR-2003, sequence version 1.
25-OCT-2017, entry version 33.
RecName: Full=4-hydroxyphenylpyruvate 3-dimethylallyltransferase {ECO:0000303|PubMed:12618544};
EC=2.5.1.111 {ECO:0000269|PubMed:12618544};
AltName: Full=4HPP 3-dimethylallyltransferase {ECO:0000303|PubMed:12618544};
AltName: Full=Aromatic prenyltransferase CloQ {ECO:0000303|PubMed:12618544};
AltName: Full=Clorobiocin biosynthesis protein Q {ECO:0000303|PubMed:12480894};
Name=cloQ {ECO:0000303|PubMed:12480894};
Streptomyces roseochromogenus subsp. oscitans.
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae;
Streptomyces.
NCBI_TaxID=149682;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=DS 12.976;
PubMed=12480894;
Pojer F., Li S.M., Heide L.;
"Molecular cloning and sequence analysis of the clorobiocin
biosynthetic gene cluster: new insights into the biosynthesis of
aminocoumarin antibiotics.";
Microbiology 148:3901-3911(2002).
[2]
FUNCTION, CATALYTIC ACTIVITY, BIOPHYSICOCHEMICAL PROPERTIES, PATHWAY,
AND SUBUNIT.
STRAIN=DS 12.976;
PubMed=12618544; DOI=10.1073/pnas.0337708100;
Pojer F., Wemakor E., Kammerer B., Chen H., Walsh C.T., Li S.M.,
Heide L.;
"CloQ, a prenyltransferase involved in clorobiocin biosynthesis.";
Proc. Natl. Acad. Sci. U.S.A. 100:2316-2321(2003).
[3]
DISRUPTION PHENOTYPE.
STRAIN=DS 12.976;
PubMed=15152806; DOI=10.7164/antibiotics.57.205;
Freitag A., Galm U., Li S.M., Heide L.;
"New aminocoumarin antibiotics from a cloQ-defective mutant of the
clorobiocin producer Streptomyces roseochromogenes DS12.976.";
J. Antibiot. 57:205-209(2004).
[4]
PRELIMINARY CRYSTALLIZATION, AND SUBUNIT.
PubMed=17077503; DOI=10.1107/S1744309106042527;
Keller S., Pojer F., Heide L., Lawson D.M.;
"Crystallization and preliminary X-ray analysis of the aromatic
prenyltransferase CloQ from the clorobiocin biosynthetic cluster of
Streptomyces roseochromogenes.";
Acta Crystallogr. F 62:1153-1155(2006).
[5]
X-RAY CRYSTALLOGRAPHY (1.85 ANGSTROMS) IN COMPLEX WITH
4-HYDROXYPHENYLPYRUVATE, AND MUTAGENESIS OF LYS-54; ARG-66; PHE-68;
ARG-160; CYS-215 AND GLU-281.
STRAIN=DS 12.976;
PubMed=20946900; DOI=10.1016/j.jmb.2010.09.067;
Metzger U., Keller S., Stevenson C.E., Heide L., Lawson D.M.;
"Structure and mechanism of the magnesium-independent aromatic
prenyltransferase CloQ from the clorobiocin biosynthetic pathway.";
J. Mol. Biol. 404:611-626(2010).
-!- FUNCTION: Magnesium-independent aromatic prenyltransferase that
catalyzes the irreversible transfer of a dimethylallyl group to 4-
hydroxyphenylpyruvate to produce the ring A structure in the
clorobiocin biosynthesis pathway. Clorobiocin is an aminocoumarin
family antibiotic. {ECO:0000269|PubMed:12618544}.
-!- CATALYTIC ACTIVITY: Dimethylallyl diphosphate + 4-
hydroxyphenylpyruvate = diphosphate + 3-dimethylallyl-4-
hydroxyphenylpyruvate. {ECO:0000269|PubMed:12618544}.
-!- BIOPHYSICOCHEMICAL PROPERTIES:
Kinetic parameters:
KM=25 uM for 4-hydroxyphenylpyruvate
{ECO:0000269|PubMed:12618544};
KM=35 uM for dimethylallyl diphosphate
{ECO:0000269|PubMed:12618544};
-!- PATHWAY: Antibiotic biosynthesis. {ECO:0000269|PubMed:12618544}.
-!- SUBUNIT: Monomer. {ECO:0000269|PubMed:12618544,
ECO:0000269|PubMed:17077503, ECO:0000269|PubMed:20946900}.
-!- DISRUPTION PHENOTYPE: Cells lacking this gene produce antibiotic
compounds (vanillobiocin, isovanillobiocin and declovanillobiocin)
with a methoxy instead of the dimethylallyl group at the position
3 of the 4-hydroxybenzoic acid moiety of clorobiocin.
{ECO:0000269|PubMed:15152806}.
-!- SIMILARITY: Belongs to the aromatic prenyltransferase family.
{ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AF329398; AAN65239.1; -; Genomic_DNA.
PDB; 2XLQ; X-ray; 2.22 A; A=1-324.
PDB; 2XLY; X-ray; 3.10 A; A=1-324.
PDB; 2XM5; X-ray; 1.85 A; A=1-324.
PDB; 2XM7; X-ray; 2.22 A; A=1-324.
PDBsum; 2XLQ; -.
PDBsum; 2XLY; -.
PDBsum; 2XM5; -.
PDBsum; 2XM7; -.
SMR; Q8GHB2; -.
KEGG; ag:AAN65239; -.
KO; K12707; -.
BRENDA; 2.5.1.111; 13262.
EvolutionaryTrace; Q8GHB2; -.
GO; GO:0004659; F:prenyltransferase activity; IDA:UniProtKB.
GO; GO:0016765; F:transferase activity, transferring alkyl or aryl (other than methyl) groups; IDA:UniProtKB.
GO; GO:0017000; P:antibiotic biosynthetic process; IDA:UniProtKB.
CDD; cd13931; PT-CloQ_NphB; 1.
InterPro; IPR020965; Prenyltransferase_CloQ.
InterPro; IPR036239; PrenylTrfase-like_sf.
Pfam; PF11468; PTase_Orf2; 1.
SFLD; SFLDG01163; II; 1.
SUPFAM; SSF143492; SSF143492; 1.
1: Evidence at protein level;
3D-structure; Antibiotic biosynthesis; Prenyltransferase; Transferase.
CHAIN 1 324 4-hydroxyphenylpyruvate 3-
dimethylallyltransferase.
/FTId=PRO_0000423992.
BINDING 160 160 Substrate.
BINDING 281 281 Substrate.
MUTAGEN 54 54 K->S: Abolishes prenyltransferase
activity. {ECO:0000269|PubMed:20946900}.
MUTAGEN 66 66 R->S: Abolishes prenyltransferase
activity. {ECO:0000269|PubMed:20946900}.
MUTAGEN 68 68 F->S: Almost abolishes prenyltransferase
activity. {ECO:0000269|PubMed:20946900}.
MUTAGEN 160 160 R->A,Q: Impaired prenyltransferase
activity. {ECO:0000269|PubMed:20946900}.
MUTAGEN 215 215 C->A,S: Does not affect prenyltransferase
activity. {ECO:0000269|PubMed:20946900}.
MUTAGEN 281 281 E->G: Abolishes prenyltransferase
activity. {ECO:0000269|PubMed:20946900}.
STRAND 7 9 {ECO:0000244|PDB:2XM5}.
HELIX 12 26 {ECO:0000244|PDB:2XM5}.
HELIX 32 48 {ECO:0000244|PDB:2XM5}.
STRAND 49 58 {ECO:0000244|PDB:2XM5}.
STRAND 64 68 {ECO:0000244|PDB:2XM5}.
HELIX 75 81 {ECO:0000244|PDB:2XM5}.
HELIX 92 104 {ECO:0000244|PDB:2XM5}.
STRAND 107 113 {ECO:0000244|PDB:2XM5}.
TURN 114 116 {ECO:0000244|PDB:2XM5}.
STRAND 117 130 {ECO:0000244|PDB:2XM5}.
HELIX 131 135 {ECO:0000244|PDB:2XM5}.
HELIX 142 145 {ECO:0000244|PDB:2XM5}.
HELIX 148 153 {ECO:0000244|PDB:2XM5}.
STRAND 158 165 {ECO:0000244|PDB:2XM5}.
TURN 166 169 {ECO:0000244|PDB:2XM5}.
STRAND 170 176 {ECO:0000244|PDB:2XM5}.
HELIX 183 191 {ECO:0000244|PDB:2XM5}.
TURN 192 194 {ECO:0000244|PDB:2XM5}.
HELIX 200 208 {ECO:0000244|PDB:2XM5}.
STRAND 215 221 {ECO:0000244|PDB:2XM5}.
TURN 222 224 {ECO:0000244|PDB:2XM5}.
STRAND 227 236 {ECO:0000244|PDB:2XM5}.
HELIX 239 241 {ECO:0000244|PDB:2XM5}.
HELIX 247 255 {ECO:0000244|PDB:2XM5}.
STRAND 260 262 {ECO:0000244|PDB:2XM7}.
STRAND 265 272 {ECO:0000244|PDB:2XM5}.
STRAND 277 286 {ECO:0000244|PDB:2XM5}.
HELIX 288 294 {ECO:0000244|PDB:2XM5}.
HELIX 307 314 {ECO:0000244|PDB:2XM5}.
SEQUENCE 324 AA; 35626 MW; D522DC79173052DA CRC64;
MPALPIDQEF DCERFRADIR ATAAAIGAPI AHRLTDTVLE AFRDNFAQGA TLWKTTSQPG
DQLSYRFFSR LKMDTVSRAI DAGLLDAAHP TLAVVDAWSS LYGGAPVQSG DFDAGRGMAK
TWLYFGGLRP AEDILTVPAL PASVQARLKD FLALGLAHVR FAAVDWRHHS ANVYFRGKGP
LDTVQFARIH ALSGSTPPAA HVVEEVLAYM PEDYCVAITL DLHSGDIERV CFYALKVPKN
ALPRIPTRIA RFLEVAPSHD VEECNVIGWS FGRSGDYVKA ERSYTGNMAE ILAGWNCFFH
GEEGRDHDLR ALHQHTESTM GGAR
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Pathways :
WP1685: Peptidoglycan biosynthesis
WP102: Heme Biosynthesis
WP1020: Fatty Acid Biosynthesis
WP1024: Steroid Biosynthesis
WP103: Cholesterol Biosynthesis
WP1049: G Protein Signaling Pathways
WP1070: Cholesterol Biosynthesis
WP1086: Heme Biosynthesis
WP1139: Fatty Acid Biosynthesis
WP114: Core lipid-linked oligosaccharide biosynthesis
WP1143: Steroid Biosynthesis
WP1165: G Protein Signaling Pathways
WP1186: Cholesterol Biosynthesis
WP120: Phenylalanine and Tyrosine Biosynthesis
WP121: Colanic Acid Building Blocks Biosynthesis
WP1221: Heme Biosynthesis
WP1228: Fatty Acid Biosynthesis
WP1314: Heme Biosynthesis
WP132: Cholesterol Biosynthesis
WP1352: Fatty Acid Biosynthesis
WP137: Fatty Acid Biosynthesis, Initial Steps
WP1371: G Protein Signaling Pathways
WP1387: Cholesterol Biosynthesis
WP14: Sucrose Biosynthesis
WP1438: Influenza A virus infection
Related Genes :
[HPD PPD] 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4-hydroxyphenylpyruvic acid oxidase) (4HPPD) (HPD) (HPPDase)
[Hpd] 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4-hydroxyphenylpyruvic acid oxidase) (4HPPD) (HPD) (HPPDase) (F Alloantigen) (F protein)
[cloQ] 4-hydroxyphenylpyruvate 3-dimethylallyltransferase (EC 2.5.1.111) (4HPP 3-dimethylallyltransferase) (Aromatic prenyltransferase CloQ) (Clorobiocin biosynthesis protein Q)
[novQ] 4-hydroxyphenylpyruvate 3-dimethylallyltransferase (EC 2.5.1.111) (4HPP 3-dimethylallyltransferase) (Aromatic prenyltransferase NovQ) (Dimethylallyl diphosphate:4-hydroxyphenylpyruvate dimethylallyl transferase) (Novobiocin biosynthesis protein Q)
[] 4-hydroxymandelate synthase (HMS) (HmaS) (EC 1.13.11.46) (4-hydroxyphenylpyruvate dioxygenase II)
[HPD PDS1 At1g06570 F12K11.9] 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4-hydroxyphenylpyruvic acid oxidase) (4HPPD) (HPD) (HPPDase)
[Hpd] 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4-hydroxyphenylpyruvic acid oxidase) (4HPPD) (HPD) (HPPDase) (F Alloantigen) (F protein)
[HPD] 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4-hydroxyphenylpyruvic acid oxidase) (4HPPD) (HPD) (HPPDase)
[tyrC ZMO0420] Cyclohexadienyl dehydrogenase (Arogenate dehydrogenase) (ADH) (EC 1.3.1.43) (Prephenate dehydrogenase) (PDH) (EC 1.3.1.12)
[ARO10 YDR380W D9481.3] Transaminated amino acid decarboxylase (EC 4.1.1.-) (EC 4.1.1.43) (EC 4.1.1.72) (EC 4.1.1.74) (EC 4.1.1.80) (Thiamine diphosphate-dependent phenylpyruvate decarboxylase) (PPDC) (Thiamine pyrophosphate-dependent 2-oxo-acid decarboxylase) (2ODC) (Transaminated branched-chain amino acid decarboxylase)
[hcxB ybiC b0801 JW0786] Hydroxycarboxylate dehydrogenase B (EC 1.1.1.-) (2-oxoglutarate reductase) (Hydroxyphenylpyruvate reductase) (EC 1.1.1.237) (Phenylpyruvate reductase)
[hpd DDB_G0277511] 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4-hydroxyphenylpyruvic acid oxidase) (4HPPD) (HPD) (HPPDase)
[rep 1a-1b] Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Cleaved into: Host translation inhibitor nsp1 (nsp1) (Leader protein); Non-structural protein 2 (nsp2) (p65 homolog); Papain-like proteinase (PL-PRO) (EC 3.4.19.12) (EC 3.4.22.69) (Non-structural protein 3) (nsp3); Non-structural protein 4 (nsp4); 3C-like proteinase (3CL-PRO) (3CLp) (EC 3.4.22.-) (nsp5); Non-structural protein 6 (nsp6); Non-structural protein 7 (nsp7); Non-structural protein 8 (nsp8); Non-structural protein 9 (nsp9); Non-structural protein 10 (nsp10) (Growth factor-like peptide) (GFL); RNA-directed RNA polymerase (Pol) (RdRp) (EC 2.7.7.48) (nsp12); Helicase (Hel) (EC 3.6.4.12) (EC 3.6.4.13) (nsp13); Guanine-N7 methyltransferase (ExoN) (EC 2.1.1.-) (EC 3.1.13.-) (nsp14); Uridylate-specific endoribonuclease (EC 3.1.-.-) (NendoU) (nsp15); 2'-O-methyltransferase (EC 2.1.1.-) (nsp16)]
[hpd] 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase) (EC 1.13.11.27)
[1a] Replicase polyprotein 1a (pp1a) (ORF1a polyprotein) [Cleaved into: Non-structural protein 1 (nsp1) (Leader protein); Non-structural protein 2 (nsp2) (p65 homolog); Non-structural protein 3 (nsp3) (EC 3.4.19.12) (EC 3.4.22.69) (PL2-PRO) (Papain-like proteinase) (PL-PRO); Non-structural protein 4 (nsp4); 3C-like proteinase (3CL-PRO) (3CLp) (EC 3.4.22.-) (nsp5); Non-structural protein 6 (nsp6); Non-structural protein 7 (nsp7); Non-structural protein 8 (nsp8); Non-structural protein 9 (nsp9); Non-structural protein 10 (nsp10) (Growth factor-like peptide) (GFL); Non-structural protein 11 (nsp11)]
[HPD] 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4-hydroxyphenylpyruvic acid oxidase) (4HPPD) (HPD) (HPPDase)
[uba4 cnxF AN2327] Adenylyltransferase and sulfurtransferase uba4 (Common component for nitrate reductase and xanthine dehydrogenase protein F) (Ubiquitin-like protein activator 4) [Includes: Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) (Adenylyltransferase uba4) (Sulfur carrier protein MOCS2A adenylyltransferase); Molybdopterin-synthase sulfurtransferase (EC 2.8.1.11) (Sulfur carrier protein MOCS2A sulfurtransferase) (Sulfurtransferase uba4)]
[] Genome polyprotein [Cleaved into: Core protein p21 (Capsid protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (p23) (EC 3.4.22.-); Serine protease NS3 (EC 3.4.21.98) (EC 3.6.1.15) (EC 3.6.4.13) (Hepacivirin) (NS3P) (p70); Non-structural protein 4A (NS4A) (p8); Non-structural protein 4B (NS4B) (p27); Non-structural protein 5A (NS5A) (p56); RNA-directed RNA polymerase (EC 2.7.7.48) (NS5B) (p68)]
[HPPR] Hydroxyphenylpyruvate reductase (HPPR) (EC 1.1.1.237)
[mcl1 RHOS4_03500 RSP_1771] L-malyl-CoA/beta-methylmalyl-CoA lyase (EC 4.1.3.24) ((3S)-malyl-CoA/beta-methylmalyl-CoA lyase) ((S)-citramalyl-CoA lyase) (EC 4.1.3.25)
[hpd SAV_5149] 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase) (EC 1.13.11.27)
[whiBTM4 49 TM4_49] Probable transcriptional regulator WhiBTM4
[] Endonuclease V (EC 3.2.2.17) (DNA-(apurinic or apyrimidinic site) lyase) (AP lyase) (EC 4.2.99.18) (T4 pyrimidine dimer glycosylase) (T4-Pdg)
[aromA aroA aroM AN0708] Pentafunctional AROM polypeptide [Includes: 3-dehydroquinate synthase (DHQS) (EC 4.2.3.4); 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS); Shikimate kinase (SK) (EC 2.7.1.71); 3-dehydroquinate dehydratase (3-dehydroquinase) (EC 4.2.1.10); Shikimate dehydrogenase (EC 1.1.1.25)]
[] Genome polyprotein [Cleaved into: P3; Protein 3AB; P2; P1; Capsid protein VP0 (VP4-VP2); Capsid protein VP4 (P1A) (Virion protein 4); Capsid protein VP2 (P1B) (Virion protein 2); Capsid protein VP3 (P1C) (Virion protein 3); Capsid protein VP1 (P1D) (Virion protein 1); Protease 2A (P2A) (EC 3.4.22.29) (Picornain 2A) (Protein 2A); Protein 2B (P2B); Protein 2C (P2C) (EC 3.6.1.15); Protein 3A (P3A); Viral protein genome-linked (VPg) (Protein 3B) (P3B); Protein 3CD (EC 3.4.22.28); Protease 3C (P3C) (EC 3.4.22.28); RNA-directed RNA polymerase (RdRp) (EC 2.7.7.48) (3D polymerase) (3Dpol) (Protein 3D) (3D)]
[] Genome polyprotein [Cleaved into: P3; Protein 3AB; P2; P1; Capsid protein VP0 (VP4-VP2); Capsid protein VP4 (P1A) (Virion protein 4); Capsid protein VP2 (P1B) (Virion protein 2); Capsid protein VP3 (P1C) (Virion protein 3); Capsid protein VP1 (P1D) (Virion protein 1); Protease 2A (P2A) (EC 3.4.22.29) (Picornain 2A) (Protein 2A); Protein 2B (P2B); Protein 2C (P2C) (EC 3.6.1.15); Protein 3A (P3A); Viral protein genome-linked (VPg) (Protein 3B) (P3B); Protein 3CD (EC 3.4.22.28); Protease 3C (P3C) (EC 3.4.22.28); RNA-directed RNA polymerase (RdRp) (EC 2.7.7.48) (3D polymerase) (3Dpol) (Protein 3D) (3D)]
[lly hpd lpg2278] 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase) (EC 1.13.11.27) (Legiolysin)
[tgt ZMO0363] Queuine tRNA-ribosyltransferase (EC 2.4.2.29) (Guanine insertion enzyme) (tRNA-guanine transglycosylase)
[chrR RHOS4_27110 RSP_1093] Anti-sigma-E factor ChrR (Sigma-E anti-sigma factor ChrR) (Transcriptional activator ChrR)
[] Genome polyprotein [Cleaved into: P3; Protein 3AB; P2; P1; Capsid protein VP0 (VP4-VP2); Capsid protein VP4 (P1A) (Virion protein 4); Capsid protein VP2 (P1B) (Virion protein 2); Capsid protein VP3 (P1C) (Virion protein 3); Capsid protein VP1 (P1D) (Virion protein 1); Protease 2A (P2A) (EC 3.4.22.29) (Picornain 2A) (Protein 2A); Protein 2B (P2B); Protein 2C (P2C) (EC 3.6.1.15); Protein 3A (P3A); Viral protein genome-linked (VPg) (Protein 3B) (P3B); Protein 3CD (EC 3.4.22.28); Protease 3C (P3C); RNA-directed RNA polymerase (RdRp) (EC 2.7.7.48) (3D polymerase) (3Dpol) (Protein 3D) (3D)]
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