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40S ribosomal protein S29-B (S36) (Small ribosomal subunit protein uS14-B) (YS29)

 RS29B_YEAST             Reviewed;          56 AA.
P41058; A2TBP5; D6VRT5; P05761;
01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
23-JAN-2007, sequence version 3.
18-JUL-2018, entry version 144.
RecName: Full=40S ribosomal protein S29-B {ECO:0000303|PubMed:9559554};
AltName: Full=S36;
AltName: Full=Small ribosomal subunit protein uS14-B {ECO:0000303|PubMed:24524803};
AltName: Full=YS29;
Name=RPS29B {ECO:0000303|PubMed:9559554}; Synonyms=RPS36B, YS29B;
OrderedLocusNames=YDL061C;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Suzuki K., Otaka E.;
"S.cerevisiae YS29B gene for ribosomal protein YS29.";
Submitted (MAR-1993) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169867;
Jacq C., Alt-Moerbe J., Andre B., Arnold W., Bahr A., Ballesta J.P.G.,
Bargues M., Baron L., Becker A., Biteau N., Bloecker H., Blugeon C.,
Boskovic J., Brandt P., Brueckner M., Buitrago M.J., Coster F.,
Delaveau T., del Rey F., Dujon B., Eide L.G., Garcia-Cantalejo J.M.,
Goffeau A., Gomez-Peris A., Granotier C., Hanemann V., Hankeln T.,
Hoheisel J.D., Jaeger W., Jimenez A., Jonniaux J.-L., Kraemer C.,
Kuester H., Laamanen P., Legros Y., Louis E.J., Moeller-Rieker S.,
Monnet A., Moro M., Mueller-Auer S., Nussbaumer B., Paricio N.,
Paulin L., Perea J., Perez-Alonso M., Perez-Ortin J.E., Pohl T.M.,
Prydz H., Purnelle B., Rasmussen S.W., Remacha M.A., Revuelta J.L.,
Rieger M., Salom D., Saluz H.P., Saiz J.E., Saren A.-M., Schaefer M.,
Scharfe M., Schmidt E.R., Schneider C., Scholler P., Schwarz S.,
Soler-Mira A., Urrestarazu L.A., Verhasselt P., Vissers S., Voet M.,
Volckaert G., Wagner G., Wambutt R., Wedler E., Wedler H., Woelfl S.,
Harris D.E., Bowman S., Brown D., Churcher C.M., Connor R., Dedman K.,
Gentles S., Hamlin N., Hunt S., Jones L., McDonald S., Murphy L.D.,
Niblett D., Odell C., Oliver K., Rajandream M.A., Richards C.,
Shore L., Walsh S.V., Barrell B.G., Dietrich F.S., Mulligan J.T.,
Allen E., Araujo R., Aviles E., Berno A., Carpenter J., Chen E.,
Cherry J.M., Chung E., Duncan M., Hunicke-Smith S., Hyman R.W.,
Komp C., Lashkari D., Lew H., Lin D., Mosedale D., Nakahara K.,
Namath A., Oefner P., Oh C., Petel F.X., Roberts D., Schramm S.,
Schroeder M., Shogren T., Shroff N., Winant A., Yelton M.A.,
Botstein D., Davis R.W., Johnston M., Andrews S., Brinkman R.,
Cooper J., Ding H., Du Z., Favello A., Fulton L., Gattung S.,
Greco T., Hallsworth K., Hawkins J., Hillier L.W., Jier M.,
Johnson D., Johnston L., Kirsten J., Kucaba T., Langston Y.,
Latreille P., Le T., Mardis E., Menezes S., Miller N., Nhan M.,
Pauley A., Peluso D., Rifkin L., Riles L., Taich A., Trevaskis E.,
Vignati D., Wilcox L., Wohldman P., Vaudin M., Wilson R.,
Waterston R., Albermann K., Hani J., Heumann K., Kleine K.,
Mewes H.-W., Zollner A., Zaccaria P.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome IV.";
Nature 387:75-78(1997).
[3]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 1-30.
STRAIN=ATCC 201390 / BY4743;
PubMed=17244705; DOI=10.1073/pnas.0610354104;
Juneau K., Palm C., Miranda M., Davis R.W.;
"High-density yeast-tiling array reveals previously undiscovered
introns and extensive regulation of meiotic splicing.";
Proc. Natl. Acad. Sci. U.S.A. 104:1522-1527(2007).
[5]
PROTEIN SEQUENCE OF 2-10, AND CLEAVAGE OF INITIATOR METHIONINE.
PubMed=18782943; DOI=10.1007/BF00341461;
Otaka E., Higo K., Itoh T.;
"Yeast ribosomal proteins. VIII. Isolation of two proteins and
sequence characterization of twenty-four proteins from cytoplasmic
ribosomes.";
Mol. Gen. Genet. 195:544-546(1984).
[6]
NOMENCLATURE, AND SUBUNIT.
PubMed=9559554;
DOI=10.1002/(SICI)1097-0061(19980330)14:5<471::AID-YEA241>3.0.CO;2-U;
Planta R.J., Mager W.H.;
"The list of cytoplasmic ribosomal proteins of Saccharomyces
cerevisiae.";
Yeast 14:471-477(1998).
[7]
CLEAVAGE OF INITIATOR METHIONINE.
PubMed=10601260; DOI=10.1074/jbc.274.52.37035;
Arnold R.J., Polevoda B., Reilly J.P., Sherman F.;
"The action of N-terminal acetyltransferases on yeast ribosomal
proteins.";
J. Biol. Chem. 274:37035-37040(1999).
[8]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=14562095; DOI=10.1038/nature02026;
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W.,
Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[9]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[10]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-25, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=19779198; DOI=10.1126/science.1172867;
Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.;
"Global analysis of Cdk1 substrate phosphorylation sites provides
insights into evolution.";
Science 325:1682-1686(2009).
[11]
SUBUNIT, AND SUBCELLULAR LOCATION.
PubMed=22096102; DOI=10.1126/science.1212642;
Ben-Shem A., Garreau de Loubresse N., Melnikov S., Jenner L.,
Yusupova G., Yusupov M.;
"The structure of the eukaryotic ribosome at 3.0 A resolution.";
Science 334:1524-1529(2011).
[12]
NOMENCLATURE.
PubMed=24524803; DOI=10.1016/j.sbi.2014.01.002;
Ban N., Beckmann R., Cate J.H.D., Dinman J.D., Dragon F., Ellis S.R.,
Lafontaine D.L.J., Lindahl L., Liljas A., Lipton J.M., McAlear M.A.,
Moore P.B., Noller H.F., Ortega J., Panse V.G., Ramakrishnan V.,
Spahn C.M.T., Steitz T.A., Tchorzewski M., Tollervey D., Warren A.J.,
Williamson J.R., Wilson D., Yonath A., Yusupov M.;
"A new system for naming ribosomal proteins.";
Curr. Opin. Struct. Biol. 24:165-169(2014).
[13]
3D-STRUCTURE MODELING OF 21-49, AND ELECTRON MICROSCOPY.
PubMed=11701127; DOI=10.1016/S0092-8674(01)00539-6;
Spahn C.M.T., Beckmann R., Eswar N., Penczek P.A., Sali A., Blobel G.,
Frank J.;
"Structure of the 80S ribosome from Saccharomyces cerevisiae -- tRNA-
ribosome and subunit-subunit interactions.";
Cell 107:373-386(2001).
[14]
3D-STRUCTURE MODELING OF 21-56, AND ELECTRON MICROSCOPY.
PubMed=14976550; DOI=10.1038/sj.emboj.7600102;
Spahn C.M.T., Gomez-Lorenzo M.G., Grassucci R.A., Joergensen R.,
Andersen G.R., Beckmann R., Penczek P.A., Ballesta J.P.G., Frank J.;
"Domain movements of elongation factor eEF2 and the eukaryotic 80S
ribosome facilitate tRNA translocation.";
EMBO J. 23:1008-1019(2004).
-!- FUNCTION: Component of the ribosome, a large ribonucleoprotein
complex responsible for the synthesis of proteins in the cell. The
small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and
translates the encoded message by selecting cognate aminoacyl-
transfer RNA (tRNA) molecules. The large subunit (LSU) contains
the ribosomal catalytic site termed the peptidyl transferase
center (PTC), which catalyzes the formation of peptide bonds,
thereby polymerizing the amino acids delivered by tRNAs into a
polypeptide chain. The nascent polypeptides leave the ribosome
through a tunnel in the LSU and interact with protein factors that
function in enzymatic processing, targeting, and the membrane
insertion of nascent chains at the exit of the ribosomal tunnel.
{ECO:0000305|PubMed:22096102}.
-!- COFACTOR:
Name=Zn(2+); Xref=ChEBI:CHEBI:29105; Evidence={ECO:0000305};
Note=Binds 1 zinc ion per subunit. {ECO:0000305};
-!- SUBUNIT: Component of the small ribosomal subunit (SSU). Mature
yeast ribosomes consist of a small (40S) and a large (60S)
subunit. The 40S small subunit contains 1 molecule of ribosomal
RNA (18S rRNA) and 33 different proteins (encoded by 57 genes).
The large 60S subunit contains 3 rRNA molecules (25S, 5.8S and 5S
rRNA) and 46 different proteins (encoded by 81 genes)
(PubMed:9559554, PubMed:22096102). {ECO:0000269|PubMed:22096102,
ECO:0000305|PubMed:9559554}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:14562095,
ECO:0000269|PubMed:22096102}.
-!- MISCELLANEOUS: Present with 5410 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- MISCELLANEOUS: There are 2 genes for uS14 in yeast. {ECO:0000305}.
-!- SIMILARITY: Belongs to the universal ribosomal protein uS14
family. {ECO:0000305}.
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EMBL; D14677; BAA03508.1; -; Genomic_DNA.
EMBL; Z74109; CAA98624.1; -; Genomic_DNA.
EMBL; EF123148; ABM97492.1; -; mRNA.
EMBL; BK006938; DAA11795.1; -; Genomic_DNA.
PIR; S48504; S48504.
RefSeq; NP_010222.1; NM_001180120.1.
PDB; 1K5X; Model; -; N=21-49.
PDB; 4V4B; EM; 11.70 A; AN=21-56.
PDB; 4V92; EM; 3.70 A; d=5-56.
PDBsum; 1K5X; -.
PDBsum; 4V4B; -.
PDBsum; 4V92; -.
ProteinModelPortal; P41058; -.
SMR; P41058; -.
BioGrid; 31997; 195.
DIP; DIP-5230N; -.
IntAct; P41058; 8.
STRING; 4932.YDL061C; -.
CarbonylDB; P41058; -.
iPTMnet; P41058; -.
MaxQB; P41058; -.
PaxDb; P41058; -.
PRIDE; P41058; -.
EnsemblFungi; YDL061C; YDL061C; YDL061C.
GeneID; 851498; -.
KEGG; sce:YDL061C; -.
EuPathDB; FungiDB:YDL061C; -.
SGD; S000002219; RPS29B.
GeneTree; ENSGT00390000005814; -.
HOGENOM; HOG000231300; -.
InParanoid; P41058; -.
KO; K02980; -.
OMA; LIWKYGL; -.
OrthoDB; EOG092C5WBL; -.
BioCyc; YEAST:G3O-29477-MONOMER; -.
Reactome; R-SCE-156827; L13a-mediated translational silencing of Ceruloplasmin expression.
Reactome; R-SCE-1799339; SRP-dependent cotranslational protein targeting to membrane.
Reactome; R-SCE-72689; Formation of a pool of free 40S subunits.
Reactome; R-SCE-72695; Formation of the ternary complex, and subsequently, the 43S complex.
Reactome; R-SCE-72702; Ribosomal scanning and start codon recognition.
Reactome; R-SCE-72706; GTP hydrolysis and joining of the 60S ribosomal subunit.
Reactome; R-SCE-975956; Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
Reactome; R-SCE-975957; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
EvolutionaryTrace; P41058; -.
PRO; PR:P41058; -.
Proteomes; UP000002311; Chromosome IV.
GO; GO:0022627; C:cytosolic small ribosomal subunit; IDA:SGD.
GO; GO:0003735; F:structural constituent of ribosome; IDA:SGD.
GO; GO:0008270; F:zinc ion binding; IBA:GO_Central.
GO; GO:0002181; P:cytoplasmic translation; IC:SGD.
InterPro; IPR001209; Ribosomal_S14.
InterPro; IPR018271; Ribosomal_S14_CS.
Pfam; PF00253; Ribosomal_S14; 1.
PROSITE; PS00527; RIBOSOMAL_S14; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Cytoplasm; Direct protein sequencing;
Metal-binding; Phosphoprotein; Reference proteome; Ribonucleoprotein;
Ribosomal protein; Zinc.
INIT_MET 1 1 Removed. {ECO:0000269|PubMed:10601260,
ECO:0000269|PubMed:18782943}.
CHAIN 2 56 40S ribosomal protein S29-B.
/FTId=PRO_0000131033.
METAL 21 21 Zinc. {ECO:0000255}.
METAL 24 24 Zinc. {ECO:0000255}.
METAL 39 39 Zinc. {ECO:0000255}.
METAL 42 42 Zinc. {ECO:0000255}.
MOD_RES 25 25 Phosphoserine.
{ECO:0000244|PubMed:19779198}.
CONFLICT 7 7 W -> G (in Ref. 5; AA sequence).
{ECO:0000305}.
SEQUENCE 56 AA; 6728 MW; F1AAE8CCE0E62552 CRC64;
MAHENVWFSH PRRFGKGSRQ CRVCSSHTGL VRKYDLNICR QCFREKANDI GFHKYR


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