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9-beta-pimara-7,15-diene oxidase (EC 1.14.13.144) (Cytochrome P450 99A3)

 C99A3_ORYSJ             Reviewed;         502 AA.
Q0JF01; A0A0P0W6Z1; A3ARJ3; B7EK40; Q5JQE4;
02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
03-OCT-2006, sequence version 1.
25-OCT-2017, entry version 76.
RecName: Full=9-beta-pimara-7,15-diene oxidase;
EC=1.14.13.144;
AltName: Full=Cytochrome P450 99A3;
Name=CYP99A3; OrderedLocusNames=Os04g0178400, LOC_Os04g09920;
ORFNames=OsJ_013415, OSJNBa0096F01.14;
Oryza sativa subsp. japonica (Rice).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
NCBI_TaxID=39947;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=12447439; DOI=10.1038/nature01183;
Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J.,
Liu Y., Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y.,
Weng Q., Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D.,
Liu X., Lu T., Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J.,
Wu M., Zhang R., Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H.,
Cai Z., Ren S., Lv G., Gu W., Zhu G., Tu Y., Jia J., Zhang Y.,
Chen J., Kang H., Chen X., Shao C., Sun Y., Hu Q., Zhang X., Zhang W.,
Wang L., Ding C., Sheng H., Gu J., Chen S., Ni L., Zhu F., Chen W.,
Lan L., Lai Y., Cheng Z., Gu M., Jiang J., Li J., Hong G., Xue Y.,
Han B.;
"Sequence and analysis of rice chromosome 4.";
Nature 420:316-320(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=16100779; DOI=10.1038/nature03895;
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[3]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=18089549; DOI=10.1093/nar/gkm978;
The rice annotation project (RAP);
"The rice annotation project database (RAP-DB): 2008 update.";
Nucleic Acids Res. 36:D1028-D1033(2008).
[4]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=24280374; DOI=10.1186/1939-8433-6-4;
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
Buell C.R., Matsumoto T.;
"Improvement of the Oryza sativa Nipponbare reference genome using
next generation sequence and optical map data.";
Rice 6:4-4(2013).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
PubMed=12869764; DOI=10.1126/science.1081288;
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from
japonica rice.";
Science 301:376-379(2003).
[7]
GENE FAMILY, AND NOMENCLATURE.
PubMed=18759039; DOI=10.1360/02yc9056;
Zhong L., Wang K., Tan J., Li W., Li S.;
"Putative cytochrome P450 genes in rice genome (Oryza sativa L. ssp.
indica) and their EST evidence.";
Sci. China, Ser. C, Life Sci. 45:512-517(2002).
[8]
FUNCTION, AND INDUCTION.
PubMed=17872948; DOI=10.1074/jbc.M703344200;
Shimura K., Okada A., Okada K., Jikumaru Y., Ko K.-W., Toyomasu T.,
Sassa T., Hasegawa M., Kodama O., Shibuya N., Koga J., Nojiri H.,
Yamane H.;
"Identification of a biosynthetic gene cluster in rice for
momilactones.";
J. Biol. Chem. 282:34013-34018(2007).
[9]
FUNCTION, CATALYTIC ACTIVITY, BIOPHYSICOCHEMICAL PROPERTIES, AND
INDUCTION BY JASMONIC ACID.
PubMed=21175892; DOI=10.1111/j.1365-313X.2010.04408.x;
Wang Q., Hillwig M.L., Peters R.J.;
"CYP99A3: functional identification of a diterpene oxidase from the
momilactone biosynthetic gene cluster in rice.";
Plant J. 65:87-95(2011).
-!- FUNCTION: Involved in momilactone phytoalexins biosynthesis; acts
as a multifunctional diterpene oxidase. Participates in the
biosynthetic steps between 9-beta-pimara-7,15-diene and 3-beta-
hydroxy-9-beta-pimara-7,15-dien-19,6-beta-olide. Catalyzes also
consecutive oxidations at C19 of syn-stemod-13(17)-ene.
{ECO:0000269|PubMed:17872948, ECO:0000269|PubMed:21175892}.
-!- CATALYTIC ACTIVITY: 9-beta-pimara-7,15-diene + 3 O(2) + 3 NADPH =
9-beta-pimara-7,15-dien-19-oate + 3 NADP(+) + 4 H(2)O.
{ECO:0000269|PubMed:21175892}.
-!- COFACTOR:
Name=heme; Xref=ChEBI:CHEBI:30413; Evidence={ECO:0000250};
-!- BIOPHYSICOCHEMICAL PROPERTIES:
Kinetic parameters:
KM=2 uM for syn-pimaradiene {ECO:0000269|PubMed:21175892};
KM=9 uM for syn-stemodene {ECO:0000269|PubMed:21175892};
Note=Kcat is 46 sec(-1) with syn-pimaradiene as substrate and 49
sec(-1) with syn-stemodene as substrate.
{ECO:0000269|PubMed:21175892};
-!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
protein {ECO:0000305}.
-!- INDUCTION: By chitin oligosaccharide elicitor and jasmonic acid
(MeJA). {ECO:0000269|PubMed:17872948,
ECO:0000269|PubMed:21175892}.
-!- MISCELLANEOUS: 3-beta-hydroxy-9-beta-pimara-7,15-dien-19,6-beta-
olide is a precursor of the phytoalexins momilactones A and B.
Phytoalexins are diterpenoid secondary metabolites involved in the
defense mechanism of the plant and produced in response to attack
(by a pathogen, elicitor or UV irradiation). Momilactone B can
also act as an allochemical (an antimicrobial and allelopathic
agent), being constitutively produced in the root of the plant and
secreted to the rhizosphere where it suppresses the growth of
neighboring plants and soil microorganisms.
-!- SIMILARITY: Belongs to the cytochrome P450 family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=CAE04106.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Sequence=EAZ29932.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
-!- WEB RESOURCE: Name=Cytochrome P450 Homepage;
URL="http://drnelson.uthsc.edu/CytochromeP450.html";
-----------------------------------------------------------------------
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EMBL; AL662933; CAE04106.1; ALT_INIT; Genomic_DNA.
EMBL; AP008210; BAF14086.1; -; Genomic_DNA.
EMBL; AP014960; BAS87950.1; -; Genomic_DNA.
EMBL; CM000141; EAZ29932.1; ALT_INIT; Genomic_DNA.
EMBL; AK071864; BAG92737.1; -; mRNA.
RefSeq; XP_015634021.1; XM_015778535.1.
UniGene; Os.103116; -.
UniGene; Os.88016; -.
SMR; Q0JF01; -.
STRING; 39947.LOC_Os04g09920.1; -.
PaxDb; Q0JF01; -.
PRIDE; Q0JF01; -.
EnsemblPlants; OS04T0178400-01; OS04T0178400-01; OS04G0178400.
GeneID; 4335091; -.
Gramene; OS04T0178400-01; OS04T0178400-01; OS04G0178400.
KEGG; osa:4335091; -.
eggNOG; KOG0156; Eukaryota.
eggNOG; COG2124; LUCA.
HOGENOM; HOG000218629; -.
InParanoid; Q0JF01; -.
KO; K16085; -.
OMA; LINSWAM; -.
OrthoDB; EOG093608BQ; -.
BioCyc; MetaCyc:MONOMER-18613; -.
BRENDA; 1.14.13.144; 4460.
SABIO-RK; Q0JF01; -.
Proteomes; UP000059680; Chromosome 4.
Genevisible; Q0JF01; OS.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IBA:GO_Central.
GO; GO:0102609; F:9-beta-stemod-13(17)-ene oxidase activity; IEA:UniProtKB-EC.
GO; GO:0036209; F:9beta-pimara-7,15-diene oxidase activity; IDA:UniProtKB.
GO; GO:0020037; F:heme binding; IEA:InterPro.
GO; GO:0005506; F:iron ion binding; IEA:InterPro.
GO; GO:0071395; P:cellular response to jasmonic acid stimulus; IEP:UniProtKB.
GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
GO; GO:0016101; P:diterpenoid metabolic process; IDA:UniProtKB.
GO; GO:0055114; P:oxidation-reduction process; IDA:UniProtKB.
GO; GO:0044550; P:secondary metabolite biosynthetic process; IBA:GO_Central.
Gene3D; 1.10.630.10; -; 1.
InterPro; IPR001128; Cyt_P450.
InterPro; IPR017972; Cyt_P450_CS.
InterPro; IPR002401; Cyt_P450_E_grp-I.
InterPro; IPR036396; Cyt_P450_sf.
Pfam; PF00067; p450; 1.
PRINTS; PR00463; EP450I.
PRINTS; PR00385; P450.
SUPFAM; SSF48264; SSF48264; 1.
PROSITE; PS00086; CYTOCHROME_P450; 1.
1: Evidence at protein level;
Complete proteome; Heme; Iron; Membrane; Metal-binding; Monooxygenase;
NADP; Oxidoreductase; Plant defense; Reference proteome;
Transmembrane; Transmembrane helix.
CHAIN 1 502 9-beta-pimara-7,15-diene oxidase.
/FTId=PRO_0000349107.
TRANSMEM 4 26 Helical. {ECO:0000255}.
TRANSMEM 106 128 Helical. {ECO:0000255}.
METAL 438 438 Iron (heme axial ligand). {ECO:0000250}.
SEQUENCE 502 AA; 55892 MW; FB572E00D9997A01 CRC64;
MMEINSEATV TLVSVVTLPI LLALLTRKSS SKKRRPPGPW NLPLVGGLLH LLRSQPQVAL
RDLAGKYGPV MFLRTGQVDT VVISSPAAAQ EVLRDKDVTF ASRPSLLVSE IFCYGNLDIG
FAPYGAYWRM LRKLCTVELL STKMVRQLAP IRDGETLALV RNIEAAAGGK KPFTLATLLI
SCTNTFTAKA AFGQACGGEL QEQFLTALDE ALKFSNGFCF GDLFPSLRFI DAMTGLRSRL
ERLRLQLDTV FDKIVAQCES NPGDSLVNVL LRIKDQGELD FPFSSTHVKA IILDMFTGGT
ETTSSTTEWL MSELMRNPEV MAKVQAEVRG VFDNKSPQDH EGLLENLSYM KLVIKETLRL
NPVLPLLLPH LCRETCEIGG YEIVEGTRVL INSWAMARSP EYWDDAEKFI PERFEDGTAD
FKGSRFEYLP FGTGRRRCPG DIFAMATLEL IVARLLYYFD WSLPDGMQPG DIDMELVVGA
TARRKNHLQL VASPYKPISM QS


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