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9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic (AtNCED3) (EC 1.13.11.51) (Protein SALT TOLERANT 1)

 NCED3_ARATH             Reviewed;         599 AA.
Q9LRR7; Q93ZU5;
01-MAY-2007, integrated into UniProtKB/Swiss-Prot.
01-OCT-2000, sequence version 1.
05-DEC-2018, entry version 108.
RecName: Full=9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic {ECO:0000303|PubMed:11532178};
Short=AtNCED3 {ECO:0000303|PubMed:11532178};
EC=1.13.11.51 {ECO:0000269|PubMed:11532178, ECO:0000269|PubMed:15466233};
AltName: Full=Protein SALT TOLERANT 1 {ECO:0000303|PubMed:15466233};
Flags: Precursor;
Name=NCED3 {ECO:0000303|PubMed:11532178};
Synonyms=STO1 {ECO:0000303|PubMed:15466233};
OrderedLocusNames=At3g14440 {ECO:0000312|Araport:AT3G14440};
ORFNames=MOA2.4 {ECO:0000312|EMBL:BAB01336.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, INDUCTION BY DROUGHT
STRESS, DISRUPTION PHENOTYPE, CATALYTIC ACTIVITY, AND PATHWAY.
PubMed=11532178; DOI=10.1046/j.1365-313x.2001.01096.x;
Iuchi S., Kobayashi M., Taji T., Naramoto M., Seki M., Kato T.,
Tabata S., Kakubari Y., Yamaguchi-Shinozaki K., Shinozaki K.;
"Regulation of drought tolerance by gene manipulation of 9-cis-
epoxycarotenoid dioxygenase, a key enzyme in abscisic acid
biosynthesis in Arabidopsis.";
Plant J. 27:325-333(2001).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10819329; DOI=10.1093/dnares/7.2.131;
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
features of the regions of 4,504,864 bp covered by sixty P1 and TAC
clones.";
DNA Res. 7:131-135(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION BY DROUGHT
STRESS.
PubMed=12834401; DOI=10.1046/j.1365-313X.2003.01786.x;
Tan B.-C., Joseph L.M., Deng W.-T., Liu L., Li Q.-B., Cline K.,
McCarty D.R.;
"Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid
dioxygenase gene family.";
Plant J. 35:44-56(2003).
[6]
FUNCTION, TISSUE SPECIFICITY, INDUCTION BY SALT STRESS, CATALYTIC
ACTIVITY, AND PATHWAY.
PubMed=15466233; DOI=10.1104/pp.104.046169;
Ruggiero B., Koiwa H., Manabe Y., Quist T.M., Inan G., Saccardo F.,
Joly R.J., Hasegawa P.M., Bressan R.A., Maggio A.;
"Uncoupling the effects of abscisic acid on plant growth and water
relations. Analysis of sto1/nced3, an abscisic acid-deficient but salt
stress-tolerant mutant in Arabidopsis.";
Plant Physiol. 136:3134-3147(2004).
[7]
ACTIVITY REGULATION.
PubMed=15247398; DOI=10.1104/pp.104.039511;
Han S.Y., Kitahata N., Sekimata K., Saito T., Kobayashi M.,
Nakashima K., Yamaguchi-Shinozaki K., Shinozaki K., Yoshida S.,
Asami T.;
"A novel inhibitor of 9-cis-epoxycarotenoid dioxygenase in abscisic
acid biosynthesis in higher plants.";
Plant Physiol. 135:1574-1582(2004).
[8]
ACTIVITY REGULATION.
PubMed=16682205; DOI=10.1016/j.bmc.2006.04.025;
Kitahata N., Han S.Y., Noji N., Saito T., Kobayashi M., Nakano T.,
Kuchitsu K., Shinozaki K., Yoshida S., Matsumoto S., Tsujimoto M.,
Asami T.;
"A 9-cis-epoxycarotenoid dioxygenase inhibitor for use in the
elucidation of abscisic acid action mechanisms.";
Bioorg. Med. Chem. 14:5555-5561(2006).
[9]
TISSUE SPECIFICITY.
PubMed=16412079; DOI=10.1111/j.1365-313X.2005.02622.x;
Lefebvre V., North H., Frey A., Sotta B., Seo M., Okamoto M.,
Nambara E., Marion-Poll A.;
"Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates
that ABA synthesized in the endosperm is involved in the induction of
seed dormancy.";
Plant J. 45:309-319(2006).
[10]
INDUCTION BY PATHOGEN.
PubMed=17304219; DOI=10.1038/sj.emboj.7601575;
de Torres-Zabala M., Truman W., Bennett M.H., Lafforgue G.,
Mansfield J.W., Rodriguez Egea P., Bogre L., Grant M.;
"Pseudomonas syringae pv. tomato hijacks the Arabidopsis abscisic acid
signalling pathway to cause disease.";
EMBO J. 26:1434-1443(2007).
-!- FUNCTION: Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage
activity. Catalyzes the first step of abscisic-acid biosynthesis
from carotenoids, in response to water stress.
{ECO:0000269|PubMed:11532178, ECO:0000269|PubMed:15466233}.
-!- CATALYTIC ACTIVITY:
Reaction=a 9-cis-epoxycarotenoid + O2 = 2-cis,4-trans-xanthoxin +
a 12'-apo-carotenal; Xref=Rhea:RHEA:23328, ChEBI:CHEBI:15379,
ChEBI:CHEBI:32304, ChEBI:CHEBI:51972, ChEBI:CHEBI:51973;
EC=1.13.11.51; Evidence={ECO:0000269|PubMed:11532178,
ECO:0000269|PubMed:15466233};
-!- CATALYTIC ACTIVITY:
Reaction=9-cis-violaxanthin + O2 = (3S,5R,6S)-5,6-epoxy-3-hydroxy-
5,6-dihydro-12'-apo-beta-caroten-12'-al + 2-cis,4-trans-
xanthoxin; Xref=Rhea:RHEA:16541, ChEBI:CHEBI:15379,
ChEBI:CHEBI:32304, ChEBI:CHEBI:34597, ChEBI:CHEBI:35305;
EC=1.13.11.51; Evidence={ECO:0000269|PubMed:11532178,
ECO:0000269|PubMed:15466233};
-!- CATALYTIC ACTIVITY:
Reaction=9'-cis-neoxanthin + O2 = (3S,5R,6R)-3,5-dihydroxy-6,7-
didehydro-5,6-dihydro-12'-apo-beta-caroten-12'-al + 2-cis,4-
trans-xanthoxin; Xref=Rhea:RHEA:19677, ChEBI:CHEBI:15379,
ChEBI:CHEBI:32304, ChEBI:CHEBI:34596, ChEBI:CHEBI:35306;
EC=1.13.11.51; Evidence={ECO:0000269|PubMed:11532178,
ECO:0000269|PubMed:15466233};
-!- COFACTOR:
Name=Fe(2+); Xref=ChEBI:CHEBI:29033;
Evidence={ECO:0000250|UniProtKB:O24592};
Note=Binds 1 Fe(2+) ion per subunit.
{ECO:0000250|UniProtKB:O24592};
-!- ACTIVITY REGULATION: Inhibited by abamine and abamineSG.
{ECO:0000269|PubMed:15247398, ECO:0000269|PubMed:16682205}.
-!- PATHWAY: Plant hormone biosynthesis; abscisate biosynthesis.
{ECO:0000269|PubMed:11532178, ECO:0000269|PubMed:15466233}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast stroma
{ECO:0000269|PubMed:12834401}. Note=Partially bound to the
thylakoid.
-!- TISSUE SPECIFICITY: Localized in roots, leaves, stems, empty
silique envelopes and seeds. Expressed at the point of organ
attachment and the abscission zones in the plant.
{ECO:0000269|PubMed:12834401, ECO:0000269|PubMed:15466233,
ECO:0000269|PubMed:16412079}.
-!- INDUCTION: By salt or drought stress and pathogen.
{ECO:0000269|PubMed:11532178, ECO:0000269|PubMed:12834401,
ECO:0000269|PubMed:15466233, ECO:0000269|PubMed:17304219}.
-!- DISRUPTION PHENOTYPE: Plants show enhanced germination on salt and
hypersensitivity to desication and LiCl.
{ECO:0000269|PubMed:11532178}.
-!- MISCELLANEOUS: Overexpression of NCED3 results in increased
accumulation of abscisic acid and resistance to water stress.
{ECO:0000269|PubMed:15466233}.
-!- SIMILARITY: Belongs to the carotenoid oxygenase family.
{ECO:0000305}.
-----------------------------------------------------------------------
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-----------------------------------------------------------------------
EMBL; AB026549; BAB70609.1; -; Genomic_DNA.
EMBL; AB028617; BAB01336.1; -; Genomic_DNA.
EMBL; CP002686; AEE75526.1; -; Genomic_DNA.
EMBL; AY056255; AAL07104.1; -; mRNA.
RefSeq; NP_188062.1; NM_112304.3.
UniGene; At.26346; -.
ProteinModelPortal; Q9LRR7; -.
SMR; Q9LRR7; -.
BioGrid; 6001; 1.
STRING; 3702.AT3G14440.1; -.
PaxDb; Q9LRR7; -.
PRIDE; Q9LRR7; -.
EnsemblPlants; AT3G14440.1; AT3G14440.1; AT3G14440.
GeneID; 820667; -.
Gramene; AT3G14440.1; AT3G14440.1; AT3G14440.
KEGG; ath:AT3G14440; -.
Araport; AT3G14440; -.
TAIR; locus:2091652; AT3G14440.
eggNOG; KOG1285; Eukaryota.
eggNOG; COG3670; LUCA.
HOGENOM; HOG000254836; -.
InParanoid; Q9LRR7; -.
KO; K09840; -.
OMA; WFNGDGN; -.
OrthoDB; EOG093605TU; -.
PhylomeDB; Q9LRR7; -.
BioCyc; ARA:AT3G14440-MONOMER; -.
BioCyc; MetaCyc:AT3G14440-MONOMER; -.
BRENDA; 1.13.11.51; 399.
UniPathway; UPA00090; -.
PRO; PR:Q9LRR7; -.
Proteomes; UP000006548; Chromosome 3.
ExpressionAtlas; Q9LRR7; baseline and differential.
Genevisible; Q9LRR7; AT.
GO; GO:0009507; C:chloroplast; IBA:GO_Central.
GO; GO:0009570; C:chloroplast stroma; IDA:TAIR.
GO; GO:0009535; C:chloroplast thylakoid membrane; IDA:TAIR.
GO; GO:0045549; F:9-cis-epoxycarotenoid dioxygenase activity; IDA:TAIR.
GO; GO:0010436; F:carotenoid dioxygenase activity; IBA:GO_Central.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0009688; P:abscisic acid biosynthetic process; ISS:TAIR.
GO; GO:0016121; P:carotene catabolic process; IBA:GO_Central.
GO; GO:0042538; P:hyperosmotic salinity response; IMP:TAIR.
GO; GO:0006970; P:response to osmotic stress; IMP:TAIR.
GO; GO:0009414; P:response to water deprivation; IMP:TAIR.
InterPro; IPR004294; Carotenoid_Oase.
PANTHER; PTHR10543; PTHR10543; 1.
Pfam; PF03055; RPE65; 1.
1: Evidence at protein level;
Abscisic acid biosynthesis; Chloroplast; Complete proteome;
Dioxygenase; Iron; Metal-binding; Oxidoreductase; Plastid;
Reference proteome; Stress response; Transit peptide.
TRANSIT 1 40 Chloroplast. {ECO:0000255}.
CHAIN 41 599 9-cis-epoxycarotenoid dioxygenase NCED3,
chloroplastic.
/FTId=PRO_0000285991.
COMPBIAS 92 96 Poly-Ala. {ECO:0000255}.
METAL 297 297 Iron; via tele nitrogen.
{ECO:0000250|UniProtKB:O24592}.
METAL 346 346 Iron; via tele nitrogen.
{ECO:0000250|UniProtKB:O24592}.
METAL 411 411 Iron; via tele nitrogen.
{ECO:0000250|UniProtKB:O24592}.
METAL 585 585 Iron; via tele nitrogen.
{ECO:0000250|UniProtKB:O24592}.
CONFLICT 371 371 R -> L (in Ref. 4; AAL07104).
{ECO:0000305}.
SEQUENCE 599 AA; 65857 MW; 7D513F39945E0CF3 CRC64;
MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL
HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA EGFLVSHEKL HPLPKTADPS
VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV
KFEHGSASYA CRFTQTNRFV QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP
AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ
QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK WIDAPDCFCF HLWNAWEEPE
TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM
VNRNMLGRKT KFAYLALAEP WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE
EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV


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