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ABC transporter B family member 25, mitochondrial (ABC transporter ABCB.25) (AtABCB25) (ABC transporter of the mitochondrion 3) (AtATM3) (Iron-sulfur clusters transporter ATM3) (Protein STARIK 1)

 AB25B_ARATH             Reviewed;         728 AA.
Q9LVM1; Q9LF78;
07-JUL-2009, integrated into UniProtKB/Swiss-Prot.
01-OCT-2000, sequence version 1.
25-OCT-2017, entry version 131.
RecName: Full=ABC transporter B family member 25, mitochondrial;
Short=ABC transporter ABCB.25;
Short=AtABCB25;
AltName: Full=ABC transporter of the mitochondrion 3;
Short=AtATM3;
Short=Iron-sulfur clusters transporter ATM3;
AltName: Full=Protein STARIK 1;
Flags: Precursor;
Name=ABCB25; Synonyms=ATM3, STA1; OrderedLocusNames=At5g58270;
ORFNames=MCK7.14;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, DISRUPTION PHENOTYPE, AND
SUBCELLULAR LOCATION.
PubMed=11158531; DOI=10.1105/tpc.13.1.89;
Kushnir S., Babiychuk E., Storozhenko S., Davey M.W., Papenbrock J.,
De Rycke R., Engler G., Stephan U.W., Lange H., Kispal G., Lill R.,
Van Montagu M.;
"A mutation of the mitochondrial ABC transporter Sta1 leads to
dwarfism and chlorosis in the Arabidopsis mutant starik.";
Plant Cell 13:89-100(2001).
[2]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, AND
SUBCELLULAR LOCATION.
STRAIN=cv. Columbia;
PubMed=17517886; DOI=10.1074/jbc.M702383200;
Chen S., Sanchez-Fernandez R., Lyver E.R., Dancis A., Rea P.A.;
"Functional characterization of AtATM1, AtATM2, and AtATM3, a
subfamily of Arabidopsis half-molecule ATP-binding cassette
transporters implicated in iron homeostasis.";
J. Biol. Chem. 282:21561-21571(2007).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10718197; DOI=10.1093/dnares/7.1.31;
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
features of the regions of 3,076,755 bp covered by sixty P1 and TAC
clones.";
DNA Res. 7:31-63(2000).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[6]
GENE FAMILY, AND NOMENCLATURE.
PubMed=11346655; DOI=10.1074/jbc.M103104200;
Sanchez-Fernandez R., Davies T.G., Coleman J.O., Rea P.A.;
"The Arabidopsis thaliana ABC protein superfamily, a complete
inventory.";
J. Biol. Chem. 276:30231-30244(2001).
[7]
GENE FAMILY.
PubMed=11855639; DOI=10.1007/s004250100661;
Martinoia E., Klein M., Geisler M., Bovet L., Forestier C.,
Kolukisaoglu H.U., Mueller-Roeber B., Schulz B.;
"Multifunctionality of plant ABC transporters -- more than just
detoxifiers.";
Planta 214:345-355(2002).
[8]
IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE
SCALE ANALYSIS].
STRAIN=cv. Landsberg erecta;
PubMed=14671022; DOI=10.1105/tpc.016055;
Heazlewood J.L., Tonti-Filippini J.S., Gout A.M., Day D.A., Whelan J.,
Millar A.H.;
"Experimental analysis of the Arabidopsis mitochondrial proteome
highlights signaling and regulatory components, provides assessment of
targeting prediction programs, and indicates plant-specific
mitochondrial proteins.";
Plant Cell 16:241-256(2004).
[9]
SUBCELLULAR LOCATION.
PubMed=16618929; DOI=10.1073/pnas.0506958103;
Dunkley T.P.J., Hester S., Shadforth I.P., Runions J., Weimar T.,
Hanton S.L., Griffin J.L., Bessant C., Brandizzi F., Hawes C.,
Watson R.B., Dupree P., Lilley K.S.;
"Mapping the Arabidopsis organelle proteome.";
Proc. Natl. Acad. Sci. U.S.A. 103:6518-6523(2006).
[10]
FUNCTION, DISRUPTION PHENOTYPE, AND INDUCTION BY CADMIUM AND LEAD.
PubMed=16461380; DOI=10.1104/pp.105.074146;
Kim D.-Y., Bovet L., Kushnir S., Noh E.W., Martinoia E., Lee Y.;
"AtATM3 is involved in heavy metal resistance in Arabidopsis.";
Plant Physiol. 140:922-932(2006).
[11]
GENE FAMILY, AND NOMENCLATURE.
PubMed=18299247; DOI=10.1016/j.tplants.2008.02.001;
Verrier P.J., Bird D., Burla B., Dassa E., Forestier C., Geisler M.,
Klein M., Kolukisaoglu H.U., Lee Y., Martinoia E., Murphy A.,
Rea P.A., Samuels L., Schulz B., Spalding E.J., Yazaki K.,
Theodoulou F.L.;
"Plant ABC proteins - a unified nomenclature and updated inventory.";
Trends Plant Sci. 13:151-159(2008).
[12]
FUNCTION, DISRUPTION PHENOTYPE, AND MUTAGENESIS OF ARG-612.
PubMed=19710232; DOI=10.1104/pp.109.143651;
Bernard D.G., Cheng Y., Zhao Y., Balk J.;
"An allelic mutant series of ATM3 reveals its key role in the
biogenesis of cytosolic iron-sulfur proteins in Arabidopsis.";
Plant Physiol. 151:590-602(2009).
[13]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=20164445; DOI=10.1105/tpc.109.068478;
Teschner J., Lachmann N., Schulze J., Geisler M., Selbach K.,
Santamaria-Araujo J., Balk J., Mendel R.R., Bittner F.;
"A novel role for Arabidopsis mitochondrial ABC transporter ATM3 in
molybdenum cofactor biosynthesis.";
Plant Cell 22:468-480(2010).
-!- FUNCTION: Performs an essential function in the generation of
cytoplasmic iron-sulfur proteins by mediating export of Fe/S
cluster precursors synthesized by NFS1 and other mitochondrial
proteins. Not required for mitochondrial and plastid Fe-S enzymes.
Probably involved in the export of cyclic pyranopterin
monophosphate (cPMP) from mitochondria into the cytosol. Mediates
glutathione-dependent resistance to heavy metals such as cadmium
and lead, as well as their transport from roots to leaves.
Regulates nonprotein thiols (NPSH) and the cellular level of
glutathione (GSH). {ECO:0000269|PubMed:11158531,
ECO:0000269|PubMed:16461380, ECO:0000269|PubMed:17517886,
ECO:0000269|PubMed:19710232, ECO:0000269|PubMed:20164445}.
-!- PATHWAY: Cofactor biosynthesis; molybdopterin biosynthesis.
-!- SUBUNIT: Homodimer. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Mitochondrion inner membrane
{ECO:0000269|PubMed:11158531, ECO:0000269|PubMed:14671022,
ECO:0000269|PubMed:16618929, ECO:0000269|PubMed:17517886}; Multi-
pass membrane protein {ECO:0000255|PROSITE-ProRule:PRU00441,
ECO:0000269|PubMed:11158531, ECO:0000269|PubMed:14671022,
ECO:0000269|PubMed:16618929, ECO:0000269|PubMed:17517886}.
-!- TISSUE SPECIFICITY: Expressed at high levels in roots, leaves,
stems, flowers and siliques. {ECO:0000269|PubMed:17517886}.
-!- INDUCTION: In roots by cadmium and lead.
{ECO:0000269|PubMed:16461380}.
-!- DISRUPTION PHENOTYPE: Plants exhibit an enhanced sensitivity to
cadmium, dwarfism and chlorosis, with an altered morphology of
leaf and cell nuclei. Mitochondria accumulate nonheme, nonprotein
iron. Decreased levels of molybdenum cofactor (MOCO) and reduced
activities of cytosolic Fe-S proteins. Reduced ability to produce
abscisic acid under normal conditions and in response to drought
stress. Male sterility when homozygous.
{ECO:0000269|PubMed:11158531, ECO:0000269|PubMed:16461380,
ECO:0000269|PubMed:19710232, ECO:0000269|PubMed:20164445}.
-!- SIMILARITY: Belongs to the ABC transporter superfamily. ABCB
family. Heavy Metal importer (TC 3.A.1.210) subfamily.
{ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; AJ272202; CAB97048.1; -; mRNA.
EMBL; AF287699; AAG09829.1; -; mRNA.
EMBL; AB019228; BAA96918.1; -; Genomic_DNA.
EMBL; CP002688; AED97027.1; -; Genomic_DNA.
EMBL; AF360334; AAK26044.1; -; mRNA.
EMBL; AY142686; AAN13224.1; -; mRNA.
RefSeq; NP_200635.1; NM_125212.3.
UniGene; At.21228; -.
ProteinModelPortal; Q9LVM1; -.
SMR; Q9LVM1; -.
BioGrid; 21183; 7.
STRING; 3702.AT5G58270.1; -.
TCDB; 3.A.1.210.8; the atp-binding cassette (abc) superfamily.
PaxDb; Q9LVM1; -.
PRIDE; Q9LVM1; -.
EnsemblPlants; AT5G58270.1; AT5G58270.1; AT5G58270.
GeneID; 835939; -.
Gramene; AT5G58270.1; AT5G58270.1; AT5G58270.
KEGG; ath:AT5G58270; -.
Araport; AT5G58270; -.
TAIR; locus:2161183; AT5G58270.
eggNOG; KOG0057; Eukaryota.
eggNOG; COG5265; LUCA.
InParanoid; Q9LVM1; -.
KO; K05663; -.
OMA; YEAQRYD; -.
OrthoDB; EOG093603VN; -.
PhylomeDB; Q9LVM1; -.
BioCyc; ARA:AT5G58270-MONOMER; -.
Reactome; R-ATH-1369007; Mitochondrial ABC transporters.
UniPathway; UPA00344; -.
PRO; PR:Q9LVM1; -.
Proteomes; UP000006548; Chromosome 5.
Genevisible; Q9LVM1; AT.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0009941; C:chloroplast envelope; IDA:TAIR.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005743; C:mitochondrial inner membrane; IBA:GO_Central.
GO; GO:0005739; C:mitochondrion; IDA:UniProtKB.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0042626; F:ATPase activity, coupled to transmembrane movement of substances; IEA:InterPro.
GO; GO:0005215; F:transporter activity; ISS:TAIR.
GO; GO:0006879; P:cellular iron ion homeostasis; IMP:UniProtKB.
GO; GO:0009658; P:chloroplast organization; IMP:TAIR.
GO; GO:0051276; P:chromosome organization; IMP:TAIR.
GO; GO:0006811; P:ion transport; IEA:UniProtKB-KW.
GO; GO:0006777; P:Mo-molybdopterin cofactor biosynthetic process; IMP:TAIR.
GO; GO:0009555; P:pollen development; IMP:TAIR.
GO; GO:0050790; P:regulation of catalytic activity; IMP:TAIR.
GO; GO:0010380; P:regulation of chlorophyll biosynthetic process; IMP:TAIR.
GO; GO:0046686; P:response to cadmium ion; IMP:TAIR.
GO; GO:0010288; P:response to lead ion; IMP:TAIR.
GO; GO:0048364; P:root development; IMP:TAIR.
Gene3D; 1.20.1560.10; -; 1.
InterPro; IPR003593; AAA+_ATPase.
InterPro; IPR011527; ABC1_TM_dom.
InterPro; IPR036640; ABC1_TM_sf.
InterPro; IPR003439; ABC_transporter-like.
InterPro; IPR017871; ABC_transporter_CS.
InterPro; IPR027417; P-loop_NTPase.
Pfam; PF00664; ABC_membrane; 1.
Pfam; PF00005; ABC_tran; 1.
SMART; SM00382; AAA; 1.
SUPFAM; SSF52540; SSF52540; 1.
SUPFAM; SSF90123; SSF90123; 1.
PROSITE; PS50929; ABC_TM1F; 1.
PROSITE; PS00211; ABC_TRANSPORTER_1; 1.
PROSITE; PS50893; ABC_TRANSPORTER_2; 1.
1: Evidence at protein level;
ATP-binding; Complete proteome; Ion transport; Iron; Iron transport;
Membrane; Mitochondrion; Mitochondrion inner membrane;
Nucleotide-binding; Reference proteome; Transit peptide;
Transmembrane; Transmembrane helix; Transport.
TRANSIT 1 97 Mitochondrion. {ECO:0000255}.
CHAIN 98 728 ABC transporter B family member 25,
mitochondrial.
/FTId=PRO_0000379134.
TRANSMEM 144 164 Helical. {ECO:0000255|PROSITE-
ProRule:PRU00441}.
TRANSMEM 166 186 Helical. {ECO:0000255|PROSITE-
ProRule:PRU00441}.
TRANSMEM 188 208 Helical. {ECO:0000255|PROSITE-
ProRule:PRU00441}.
TRANSMEM 275 295 Helical. {ECO:0000255|PROSITE-
ProRule:PRU00441}.
TRANSMEM 300 320 Helical. {ECO:0000255|PROSITE-
ProRule:PRU00441}.
TRANSMEM 383 403 Helical. {ECO:0000255|PROSITE-
ProRule:PRU00441}.
TRANSMEM 419 439 Helical. {ECO:0000255|PROSITE-
ProRule:PRU00441}.
DOMAIN 143 445 ABC transmembrane type-1.
{ECO:0000255|PROSITE-ProRule:PRU00441}.
DOMAIN 479 713 ABC transporter. {ECO:0000255|PROSITE-
ProRule:PRU00434}.
NP_BIND 512 523 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00434}.
BINDING 488 488 ATP. {ECO:0000250}.
MUTAGEN 612 612 R->K: Resistant to sirtinol and reduced
chlorophyll content.
{ECO:0000269|PubMed:19710232}.
CONFLICT 328 328 R -> S (in Ref. 1; CAB97048).
{ECO:0000305}.
CONFLICT 338 338 A -> D (in Ref. 1; CAB97048).
{ECO:0000305}.
SEQUENCE 728 AA; 80420 MW; A1FDD5C518E11B50 CRC64;
MSRGSRFVRA PGLLLCRVNL QPQPKIPSFS YSLRSDYRLH NGFSNYIRRN SIRTSPVINA
FLSDNSPSPS PSPSPIRFVQ RSSMLNGRLF STSTPNPDQT TTKTKEIKTT SSDSDSAMAD
MKILRTLAGY LWMRDNPEFR FRVIAALGFL VGAKVLNVQV PFLFKLAVDW LASATGTGAS
LTTFAATNPT LLTVFATPAA VLIGYGIART GSSAFNELRT AVFSKVALRT IRSVSRKVFS
HLHDLDLRYH LSRETGGLNR IIDRGSRAIN FILSAMVFNV VPTILEISMV SGILAYKFGA
AFAWITSLSV GSYIVFTLAV TQWRTKFRKA MNKADNDAST RAIDSLINYE TVKYFNNEGY
EAEKYDQFLK KYEDAALQTQ RSLAFLNFGQ SIIFSTALST AMVLCSQGIM NGQMTVGDLV
MVNGLLFQLS LPLNFLGSVY RETIQSLVDM KSMFQLLEEK SDITNTSDAK PLVLKGGNIE
FENVHFSYLP ERKILDGISF VVPAGKSVAI VGTSGSGKST ILRMLFRFFD TDSGNIRIDG
QDIKEVRLDS LRSSIGVVPQ DTVLFNDTIF HNIHYGRLSA TEEEVYEAAR RAAIHETISN
FPDKYSTIVG ERGLKLSGGE KQRVALARTF LKSPAILLCD EATSALDSTT EAEILNALKA
LASNRTSIFI AHRLTTAMQC DEIVVLENGK VVEQGPHDEL LGKSGRYAQL WTQQNSSVDM
LDAAIKLE


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