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AP-4 complex subunit epsilon (AP-4 adaptor complex subunit epsilon) (Adaptor-related protein complex 4 subunit epsilon) (Epsilon subunit of AP-4) (Epsilon-adaptin)

 AP4E_ARATH              Reviewed;         938 AA.
Q8L7A9; Q9C6W3;
05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
01-OCT-2002, sequence version 1.
25-APR-2018, entry version 98.
RecName: Full=AP-4 complex subunit epsilon;
AltName: Full=AP-4 adaptor complex subunit epsilon;
AltName: Full=Adaptor-related protein complex 4 subunit epsilon;
AltName: Full=Epsilon subunit of AP-4;
AltName: Full=Epsilon-adaptin;
OrderedLocusNames=At1g31730; ORFNames=F27M3.7;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
GENE FAMILY, AND REVIEW.
PubMed=11598180; DOI=10.1091/mbc.12.10.2907;
Boehm M., Bonifacino J.S.;
"Adaptins: the final recount.";
Mol. Biol. Cell 12:2907-2920(2001).
[5]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=19376835; DOI=10.1104/pp.109.138677;
Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
Grossmann J., Gruissem W., Baginsky S.;
"Large-scale Arabidopsis phosphoproteome profiling reveals novel
chloroplast kinase substrates and phosphorylation networks.";
Plant Physiol. 150:889-903(2009).
-!- FUNCTION: Subunit of novel type of clathrin- or non-clathrin-
associated protein coat involved in targeting proteins from the
trans-Golgi network (TGN) to the endosomal-lysosomal system.
{ECO:0000250}.
-!- SUBUNIT: Adaptor protein complex 4 (AP-4) is a heterotetramer
composed of two large adaptins (epsilon-type subunit and beta-type
subunit), a medium adaptin (mu-type subunit) and a small adaptin
(sigma-type subunit). {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Golgi apparatus, trans-Golgi network
{ECO:0000250}. Membrane, coated pit {ECO:0000250}. Note=Associated
with the trans-Golgi network. {ECO:0000250}.
-!- SIMILARITY: Belongs to the adaptor complexes large subunit family.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAG60138.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AC074360; AAG60138.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002684; AEE31386.1; -; Genomic_DNA.
EMBL; AY136369; AAM97035.1; -; mRNA.
EMBL; BT000268; AAN15587.1; -; mRNA.
RefSeq; NP_174454.2; NM_102908.3.
UniGene; At.19687; -.
ProteinModelPortal; Q8L7A9; -.
SMR; Q8L7A9; -.
BioGrid; 25294; 1.
STRING; 3702.AT1G31730.1; -.
iPTMnet; Q8L7A9; -.
PaxDb; Q8L7A9; -.
PRIDE; Q8L7A9; -.
EnsemblPlants; AT1G31730.1; AT1G31730.1; AT1G31730.
GeneID; 840060; -.
Gramene; AT1G31730.1; AT1G31730.1; AT1G31730.
KEGG; ath:AT1G31730; -.
Araport; AT1G31730; -.
TAIR; locus:2028586; AT1G31730.
eggNOG; KOG1062; Eukaryota.
eggNOG; ENOG410XPKK; LUCA.
HOGENOM; HOG000231885; -.
InParanoid; Q8L7A9; -.
KO; K12400; -.
OMA; SYKIWKD; -.
OrthoDB; EOG093602NS; -.
PhylomeDB; Q8L7A9; -.
Reactome; R-ATH-432720; Lysosome Vesicle Biogenesis.
PRO; PR:Q8L7A9; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q8L7A9; baseline and differential.
Genevisible; Q8L7A9; AT.
GO; GO:0030124; C:AP-4 adaptor complex; IPI:TAIR.
GO; GO:0005905; C:clathrin-coated pit; IEA:UniProtKB-SubCell.
GO; GO:0005829; C:cytosol; IDA:TAIR.
GO; GO:0005794; C:Golgi apparatus; IEA:UniProtKB-SubCell.
GO; GO:0009506; C:plasmodesma; IDA:TAIR.
GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
GO; GO:0016192; P:vesicle-mediated transport; IEA:InterPro.
Gene3D; 1.25.10.10; -; 1.
InterPro; IPR017109; AP4_complex_esu.
InterPro; IPR011989; ARM-like.
InterPro; IPR016024; ARM-type_fold.
InterPro; IPR002553; Clathrin/coatomer_adapt-like_N.
Pfam; PF01602; Adaptin_N; 1.
PIRSF; PIRSF037097; AP4_complex_epsilon; 1.
SUPFAM; SSF48371; SSF48371; 1.
1: Evidence at protein level;
Coated pit; Complete proteome; Golgi apparatus; Membrane;
Protein transport; Reference proteome; Repeat; Transport.
CHAIN 1 938 AP-4 complex subunit epsilon.
/FTId=PRO_0000397855.
REPEAT 118 153 HEAT 1.
REPEAT 154 190 HEAT 2.
REPEAT 192 227 HEAT 3.
REPEAT 234 272 HEAT 4.
REPEAT 321 358 HEAT 5.
REPEAT 359 395 HEAT 6.
REPEAT 397 431 HEAT 7.
REPEAT 454 495 HEAT 8.
REPEAT 517 556 HEAT 9.
REPEAT 562 601 HEAT 10.
REPEAT 874 911 HEAT 11.
SEQUENCE 938 AA; 103735 MW; C9ECEA36AB09EDF8 CRC64;
MEQLKTIGRE LAMGSQGGFG QSKEFLDLVK SIGEARSKAE EDRIVLSEVD ILKRRLLEPD
IPKRKMKEYI IRLVYIEMLG HDASFGYIYA VKMTHDDNLL LKRTGYLAVT LFLNEDHDLI
ILIVNTIQKD LRSDNYLVVC AALNAICRLI NEETIPAVLP QVVELLNHQK EAVRKKAIMA
LHRFHRKSPS SVSHLVSNFR KRLCDNDPGV MGATLCPLFD LISEDVNSYK DLVSSFVSIL
KQVTERRLPK SYDYHQMPAP FIQIKLLKIM ALLGSGDKNA SDIMSMVLGD LFRKCDSSTN
IGNAILYECI RCISCILPNP KLLEAAADAI SKFLKSDSHN LKYMGIDGLG RLIKISPDIA
EQHQLAVIDC LEDPDDTLKR KTFELLYKMT KSSNVEVIVD RMIDYMISIN DNHYKTEIAS
RCVELAEQFA PSNQWFIQIM NKVFEHAGDL VNIKVAHNLM RLIAEGFGED DDDADSKLRL
SAVESYLQLI SEPKLPSLFL QVISWVLGEY GTADGKYSAS YISGKLCDVA DAYSSDETVK
GYAVSALMKI YAFEIASGRK VDVLPECQSL IEELLASHST DLQQRAYELQ ALLALDARAV
ETILPLDASC EDIEVDKDLS FLNGYIQQAI ESGAQPYISE RERSGMFETT DYHPQDHHEV
PTHALRFEAY ELPKPSVPPQ ASNELVPVPE PSYYSESHQP ISTSLVSERE SSEIKLRLDG
VKQKWGRPSY QSTTAASSTT PQAANGISTH SDAGVGSSSS KPRSSYEPKK PEIDPEKQRL
AASLFGGSSS RTDKRSSSGG HKPAKGTANK TATVPKENQT PVQPPPDLLD FGEPTATTAT
AMDPFKELEG LMDSSSQDGG SSDVMGLYSD AAPVTTTTSV DSLLSELSDS SKGNSRTYQP
QTSKGPNTKE ALEKDALVRQ MGVNPTSQNP TLFKDLLG


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