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AT5g45420/MFC19_9 (Duplicated homeodomain-like superfamily protein) (Uncharacterized protein At5g45420/MFC19_9)

 MAMYB_ARATH             Reviewed;         309 AA.
Q9ASQ2; Q9FHJ4;
31-JAN-2018, integrated into UniProtKB/Swiss-Prot.
01-JUN-2001, sequence version 1.
31-JAN-2018, entry version 138.
RecName: Full=Transcription factor MAMYB {ECO:0000305};
AltName: Full=Membrane-anchored MYB {ECO:0000303|PubMed:21477080};
Name=MAMYB {ECO:0000303|PubMed:21477080};
OrderedLocusNames=At5g45420 {ECO:0000312|Araport:AT5G45420};
ORFNames=MFC19.9 {ECO:0000312|EMBL:BAB09170.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10470850; DOI=10.1093/dnares/6.3.183;
Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Kotani H.,
Miyajima N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. IX.
Sequence features of the regions of 1,011,550 bp covered by seventeen
P1 and TAC clones.";
DNA Res. 6:183-195(1999).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=11910074; DOI=10.1126/science.1071006;
Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M.,
Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T.,
Shibata K., Shinagawa A., Shinozaki K.;
"Functional annotation of a full-length Arabidopsis cDNA collection.";
Science 296:141-145(2002).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
FUNCTION, SUBCELLULAR LOCATION, TOPOLOGY, AND INDUCTION BY AUXIN.
PubMed=21477080; DOI=10.1111/j.1365-313X.2011.04602.x;
Slabaugh E., Held M., Brandizzi F.;
"Control of root hair development in Arabidopsis thaliana by an
endoplasmic reticulum anchored member of the R2R3-MYB transcription
factor family.";
Plant J. 67:395-405(2011).
-!- FUNCTION: Transcription factor involved in the regulation of root
hair development, possibly through auxin signaling. Its
endoplasmic reticulum membrane localization is not compatible with
its transcription factor activity in the nucleus. May be cleaved
to target the nucleus. {ECO:0000269|PubMed:21477080}.
-!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
{ECO:0000269|PubMed:21477080}; Multi-pass membrane protein
{ECO:0000255}. Nucleus {ECO:0000305|PubMed:21477080}. Note=Its
endoplasmic reticulum membrane localization is not compatible with
its transcription factor activity in the nucleus. May be cleaved
to target the nucleus. A truncated form of MAMYB (amino acids 84
to 309) lacking the 2 transmembrane domains is localized to the
nucleus. {ECO:0000269|PubMed:21477080}.
-!- INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
-!- CAUTION: Its endoplasmic reticulum membrane localization is not
compatible with its transcription factor activity in the nucleus.
May be cleaved to target the nucleus. A truncated form of MAMYB
(amino acids 84 to 309) lacking the 2 transmembrane domains is
localized to the nucleus. {ECO:0000269|PubMed:21477080}.
-!- SEQUENCE CAUTION:
Sequence=BAB09170.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AB018113; BAB09170.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002688; AED95248.1; -; Genomic_DNA.
EMBL; CP002688; ANM69818.1; -; Genomic_DNA.
EMBL; CP002688; ANM69819.1; -; Genomic_DNA.
EMBL; AK117467; BAC42132.1; -; mRNA.
EMBL; AF367345; AAK32932.1; -; mRNA.
EMBL; AY074839; AAL69537.1; -; mRNA.
RefSeq; NP_001331471.1; NM_001344621.1.
RefSeq; NP_001331472.1; NM_001344620.1.
RefSeq; NP_568645.1; NM_123910.3.
UniGene; At.25208; -.
SMR; Q9ASQ2; -.
IntAct; Q9ASQ2; 6.
STRING; 3702.AT5G45420.1; -.
PaxDb; Q9ASQ2; -.
EnsemblPlants; AT5G45420.1; AT5G45420.1; AT5G45420.
EnsemblPlants; AT5G45420.2; AT5G45420.2; AT5G45420.
EnsemblPlants; AT5G45420.3; AT5G45420.3; AT5G45420.
GeneID; 834578; -.
Gramene; AT5G45420.1; AT5G45420.1; AT5G45420.
Gramene; AT5G45420.2; AT5G45420.2; AT5G45420.
Gramene; AT5G45420.3; AT5G45420.3; AT5G45420.
KEGG; ath:AT5G45420; -.
Araport; AT5G45420; -.
TAIR; locus:2163573; AT5G45420.
eggNOG; KOG0724; Eukaryota.
eggNOG; COG5269; LUCA.
OMA; MVKHPAG; -.
OrthoDB; EOG09360GKN; -.
Proteomes; UP000006548; Chromosome 5.
GO; GO:0005783; C:endoplasmic reticulum; IDA:TAIR.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005886; C:plasma membrane; IDA:TAIR.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0048767; P:root hair elongation; IMP:TAIR.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017877; Myb-like_dom.
InterPro; IPR001005; SANT/Myb.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 2.
PROSITE; PS50090; MYB_LIKE; 2.
1: Evidence at protein level;
Complete proteome; DNA-binding; Endoplasmic reticulum; Membrane;
Nucleus; Reference proteome; Repeat; Transcription;
Transcription regulation; Transmembrane; Transmembrane helix.
CHAIN 1 309 Transcription factor MAMYB.
/FTId=PRO_0000443061.
TOPO_DOM 1 34 Cytoplasmic.
{ECO:0000269|PubMed:21477080}.
TRANSMEM 35 55 Helical. {ECO:0000255}.
TOPO_DOM 56 62 Lumenal. {ECO:0000269|PubMed:21477080}.
TRANSMEM 63 83 Helical. {ECO:0000255}.
TOPO_DOM 84 309 Cytoplasmic.
{ECO:0000269|PubMed:21477080}.
DOMAIN 156 209 Myb-like 1. {ECO:0000255|PROSITE-
ProRule:PRU00133}.
DOMAIN 244 298 Myb-like 2. {ECO:0000255|PROSITE-
ProRule:PRU00133}.
SEQUENCE 309 AA; 34363 MW; B1B3AA50DCB49898 CRC64;
MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA
KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH DESSTDNERE SRRKSVNKRS
KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP
GRWETVASAF GGRYKTENVI KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG
AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
FRSSKTPAN


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