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ATP-dependent DNA helicase 2 subunit KU80 (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 2) (ATP-dependent DNA helicase II 80 kDa subunit)

 KU80_ARATH              Reviewed;         680 AA.
Q9FQ09; Q9C7Z3; Q9LNF5;
18-MAY-2010, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 1.
05-DEC-2018, entry version 109.
RecName: Full=ATP-dependent DNA helicase 2 subunit KU80;
EC=3.6.4.12;
AltName: Full=ATP-dependent DNA helicase 2 subunit 2;
AltName: Full=ATP-dependent DNA helicase II 80 kDa subunit;
Name=KU80; OrderedLocusNames=At1g48050; ORFNames=F21D18.26, T2J15.4;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], INDUCTION, SUBCELLULAR LOCATION, TISSUE
SPECIFICITY, AND INTERACTION WITH KU70.
STRAIN=cv. Columbia;
PubMed=12148535; DOI=10.1046/j.1365-313X.2002.01258.x;
Tamura K., Adachi Y., Chiba K., Oguchi K., Takahashi H.;
"Identification of Ku70 and Ku80 homologues in Arabidopsis thaliana:
evidence for a role in the repair of DNA double-strand breaks.";
Plant J. 29:771-781(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
FUNCTION, TISSUE SPECIFICITY, AND INTERACTION WITH KU70.
PubMed=12032094; DOI=10.1093/emboj/21.11.2819;
Riha K., Watson J.M., Parkey J., Shippen D.E.;
"Telomere length deregulation and enhanced sensitivity to genotoxic
stress in Arabidopsis mutants deficient in Ku70.";
EMBO J. 21:2819-2826(2002).
[5]
FUNCTION, INTERACTION WITH KU70, AND DISRUPTION PHENOTYPE.
PubMed=12182708; DOI=10.1046/j.1365-313X.2002.01370.x;
West C.E., Waterworth W.M., Story G.W., Sunderland P.A., Jiang Q.,
Bray C.M.;
"Disruption of the Arabidopsis AtKu80 gene demonstrates an essential
role for AtKu80 protein in efficient repair of DNA double-strand
breaks in vivo.";
Plant J. 31:517-528(2002).
[6]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=12615949; DOI=10.1105/tpc.008623;
Gallego M.E., Jalut N., White C.I.;
"Telomerase dependence of telomere lengthening in Ku80 mutant
Arabidopsis.";
Plant Cell 15:782-789(2003).
[7]
DISRUPTION PHENOTYPE.
PubMed=12753583; DOI=10.1046/j.1365-313X.2003.01738.x;
Friesner J., Britt A.B.;
"Ku80- and DNA ligase IV-deficient plants are sensitive to ionizing
radiation and defective in T-DNA integration.";
Plant J. 34:427-440(2003).
[8]
INTERACTION WITH WEX.
PubMed=16396834; DOI=10.1093/nar/gki984;
Li B., Conway N., Navarro S., Comai L., Comai L.;
"A conserved and species-specific functional interaction between the
Werner syndrome-like exonuclease atWEX and the Ku heterodimer in
Arabidopsis.";
Nucleic Acids Res. 33:6861-6867(2005).
[9]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=16380432; DOI=10.1073/pnas.0506437103;
Li J., Vaidya M., White C., Vainstein A., Citovsky V., Tzfira T.;
"Involvement of KU80 in T-DNA integration in plant cells.";
Proc. Natl. Acad. Sci. U.S.A. 102:19231-19236(2005).
[10]
INDUCTION BY HEAT SHOCK.
PubMed=18515112; DOI=10.1016/j.bbagrm.2008.05.002;
Liu P.F., Wang Y.K., Chang W.C., Chang H.Y., Pan R.L.;
"Regulation of Arabidopsis thaliana Ku genes at different
developmental stages under heat stress.";
Biochim. Biophys. Acta 1779:402-407(2008).
-!- FUNCTION: Single-stranded DNA-dependent ATP-dependent helicase.
Involved in DNA non-homologous end joining (NHEJ) required for
double-strand break repair. When associated with KU70, binds to
double-stranded telomeric and non-telomeric DNA sequences, but not
to single-stranded DNA. Plays a role in maintaining telomere
length. Acts as a negative regulator of telomerase. Binds to and
recombines double-stranded T-DNA molecules.
{ECO:0000269|PubMed:12032094, ECO:0000269|PubMed:12182708,
ECO:0000269|PubMed:12615949, ECO:0000269|PubMed:16380432}.
-!- CATALYTIC ACTIVITY:
Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
-!- SUBUNIT: Heterodimer with KU70. Interacts with WEX.
{ECO:0000269|PubMed:12032094, ECO:0000269|PubMed:12148535,
ECO:0000269|PubMed:12182708, ECO:0000269|PubMed:16396834}.
-!- INTERACTION:
Q84LH3:WEX; NbExp=2; IntAct=EBI-926593, EBI-926580;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:12148535}.
Cytoplasm {ECO:0000269|PubMed:12148535}. Note=Predominantly in the
nucleus.
-!- TISSUE SPECIFICITY: Expressed ubiquitously.
{ECO:0000269|PubMed:12032094, ECO:0000269|PubMed:12148535}.
-!- INDUCTION: Up-regulated in response to induction of double-strand
breaks. Down-regulated by heat shock.
{ECO:0000269|PubMed:12148535, ECO:0000269|PubMed:18515112}.
-!- DISRUPTION PHENOTYPE: No visible phenotype when grown under normal
conditions. Hypersensitivity to ionising radiation (IR) and to
DNA-damaging agents. Longer telomeres. Defective in T-DNA
integration. {ECO:0000269|PubMed:12182708,
ECO:0000269|PubMed:12615949, ECO:0000269|PubMed:12753583,
ECO:0000269|PubMed:16380432}.
-!- SIMILARITY: Belongs to the ku80 family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAF79532.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=AAG51535.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
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EMBL; AF283758; AAG44851.1; -; mRNA.
EMBL; AC023673; AAF79532.1; ALT_SEQ; Genomic_DNA.
EMBL; AC051631; AAG51535.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002684; AEE32242.1; -; Genomic_DNA.
PIR; G96520; G96520.
RefSeq; NP_564520.1; NM_103701.2.
UniGene; At.42965; -.
ProteinModelPortal; Q9FQ09; -.
SMR; Q9FQ09; -.
BioGrid; 26448; 1.
IntAct; Q9FQ09; 1.
STRING; 3702.AT1G48050.1; -.
iPTMnet; Q9FQ09; -.
PaxDb; Q9FQ09; -.
PRIDE; Q9FQ09; -.
EnsemblPlants; AT1G48050.1; AT1G48050.1; AT1G48050.
GeneID; 841223; -.
Gramene; AT1G48050.1; AT1G48050.1; AT1G48050.
KEGG; ath:AT1G48050; -.
Araport; AT1G48050; -.
TAIR; locus:2023757; AT1G48050.
eggNOG; KOG2326; Eukaryota.
eggNOG; ENOG410YKH9; LUCA.
HOGENOM; HOG000006137; -.
InParanoid; Q9FQ09; -.
KO; K10885; -.
OrthoDB; EOG093603QV; -.
PhylomeDB; Q9FQ09; -.
Reactome; R-ATH-5693571; Nonhomologous End-Joining (NHEJ).
Reactome; R-ATH-6798695; Neutrophil degranulation.
PRO; PR:Q9FQ09; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q9FQ09; baseline and differential.
Genevisible; Q9FQ09; AT.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0043564; C:Ku70:Ku80 complex; IBA:GO_Central.
GO; GO:0000784; C:nuclear chromosome, telomeric region; IBA:GO_Central.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004003; F:ATP-dependent DNA helicase activity; IEA:InterPro.
GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
GO; GO:0003690; F:double-stranded DNA binding; IDA:TAIR.
GO; GO:0042162; F:telomeric DNA binding; IBA:GO_Central.
GO; GO:0071480; P:cellular response to gamma radiation; IBA:GO_Central.
GO; GO:0071481; P:cellular response to X-ray; IBA:GO_Central.
GO; GO:0015074; P:DNA integration; TAS:TAIR.
GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
GO; GO:0006281; P:DNA repair; TAS:TAIR.
GO; GO:0006302; P:double-strand break repair; IMP:TAIR.
GO; GO:0006303; P:double-strand break repair via nonhomologous end joining; IMP:TAIR.
GO; GO:0009408; P:response to heat; IEP:TAIR.
GO; GO:0000723; P:telomere maintenance; IBA:GO_Central.
Gene3D; 1.25.40.240; -; 1.
Gene3D; 2.40.290.10; -; 1.
Gene3D; 3.40.50.410; -; 1.
InterPro; IPR006164; Ku70/Ku80_beta-barrel_dom.
InterPro; IPR024193; Ku80.
InterPro; IPR005160; Ku_C.
InterPro; IPR036494; Ku_C_sf.
InterPro; IPR005161; Ku_N.
InterPro; IPR014893; Ku_PK_bind.
InterPro; IPR016194; SPOC-like_C_dom_sf.
InterPro; IPR036465; vWFA_dom_sf.
PANTHER; PTHR12604:SF4; PTHR12604:SF4; 1.
Pfam; PF02735; Ku; 1.
Pfam; PF03730; Ku_C; 1.
Pfam; PF03731; Ku_N; 1.
Pfam; PF08785; Ku_PK_bind; 1.
PIRSF; PIRSF016570; Ku80; 1.
SMART; SM00559; Ku78; 1.
SUPFAM; SSF100939; SSF100939; 1.
SUPFAM; SSF101420; SSF101420; 1.
SUPFAM; SSF53300; SSF53300; 1.
1: Evidence at protein level;
ATP-binding; Complete proteome; Cytoplasm; DNA damage;
DNA recombination; DNA repair; DNA-binding; Helicase; Hydrolase;
Nucleotide-binding; Nucleus; Reference proteome.
CHAIN 1 680 ATP-dependent DNA helicase 2 subunit
KU80.
/FTId=PRO_0000394131.
DOMAIN 224 432 Ku.
SEQUENCE 680 AA; 76688 MW; FA7C0191DF05A976 CRC64;
MARNREGLVL VLDVGPAMRS VLPDVEKACS MLLQKKLIYN KYDEVGIVVF GTEETGNELA
REIGGYENVT VLRNIRVVDE LAAEHVKQLP RGTVAGDFLD ALIVGMDMLI KMYGNAHKGK
KRMCLITNAA CPTKDPFEGT KDDQVSTIAM KMAAEGIKME SIVMRSNLSG DAHERVIEEN
DHLLTLFSSN AIAKTVNVDS PLSLLGSLKT RRVAPVTLFR GDLEINPTMK IKVWVYKKVA
EERLPTLKMY SDKAPPTDKF AKHEVKVDYD YKVTAESTEV IAPEERIKGF RYGPQVIPIS
PDQIETLKFK TDKGMKLLGF TEASNILRHY YMKDVNIVVP DPSKEKSVLA VSAIAREMKE
TNKVAIVRCV WRNGQGNVVV GVLTPNVSER DDTPDSFYFN VLPFAEDVRE FPFPSFNKLP
SSWKPDEQQQ AVADNLVKML DLAPSAEEEV LKPDLTPNPV LQRFYEYLEL KSKSTDATLP
PMDGTFKRLM EQDPELSSNN KSIMDTFRGS FEVKENPKLK KASKRLLRDK PSGSDDEDNR
MITYDAKENK IDIVGDANPI QDFEAMISRR DKTDWTEKAI TQMKNLIMKL VENCTDEGDK
ALECVLALRK GCVLEQEPKQ FNEFLNHLFK LCQERNLSHL LEHFMSKKIT LIPKSEAADS
DIVDENAGDF IVKQESMLES


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