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ATP-dependent RNA helicase FAL1 (EC 3.6.4.13)
FAL1_AJECN Reviewed; 450 AA.
A6QSQ0;
13-NOV-2007, integrated into UniProtKB/Swiss-Prot.
21-AUG-2007, sequence version 1.
25-OCT-2017, entry version 50.
RecName: Full=ATP-dependent RNA helicase FAL1;
EC=3.6.4.13;
Name=FAL1; ORFNames=HCAG_00406;
Ajellomyces capsulatus (strain NAm1 / WU24) (Darling's disease fungus)
(Histoplasma capsulatum).
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes;
Eurotiomycetidae; Onygenales; Ajellomycetaceae; Histoplasma.
NCBI_TaxID=339724;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=NAm1 / WU24;
PubMed=19717792; DOI=10.1101/gr.087551.108;
Sharpton T.J., Stajich J.E., Rounsley S.D., Gardner M.J.,
Wortman J.R., Jordar V.S., Maiti R., Kodira C.D., Neafsey D.E.,
Zeng Q., Hung C.-Y., McMahan C., Muszewska A., Grynberg M.,
Mandel M.A., Kellner E.M., Barker B.M., Galgiani J.N., Orbach M.J.,
Kirkland T.N., Cole G.T., Henn M.R., Birren B.W., Taylor J.W.;
"Comparative genomic analyses of the human fungal pathogens
Coccidioides and their relatives.";
Genome Res. 19:1722-1731(2009).
-!- FUNCTION: ATP-dependent RNA helicase involved in 40S ribosomal
subunit biogenesis. Required for the processing and cleavage of
35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA
(By similarity). {ECO:0000250}.
-!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
-!- SUBCELLULAR LOCATION: Nucleus, nucleolus {ECO:0000250}.
-!- DOMAIN: The Q motif is unique to and characteristic of the DEAD
box family of RNA helicases and controls ATP binding and
hydrolysis.
-!- SIMILARITY: Belongs to the DEAD box helicase family. DDX48/FAL1
subfamily. {ECO:0000305}.
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EMBL; CH476655; EDN02542.1; -; Genomic_DNA.
RefSeq; XP_001543360.1; XM_001543310.1.
ProteinModelPortal; A6QSQ0; -.
SMR; A6QSQ0; -.
STRING; 339724.XP_001543360.1; -.
PRIDE; A6QSQ0; -.
EnsemblFungi; EDN02542; EDN02542; HCAG_00406.
GeneID; 5450501; -.
KEGG; aje:HCAG_00406; -.
EuPathDB; FungiDB:HCAG_00406; -.
eggNOG; KOG0327; Eukaryota.
eggNOG; COG0513; LUCA.
KO; K13025; -.
OrthoDB; EOG092C2B1L; -.
Proteomes; UP000009297; Unassembled WGS sequence.
GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
CDD; cd00079; HELICc; 1.
InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR001650; Helicase_C.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
Pfam; PF00270; DEAD; 1.
Pfam; PF00271; Helicase_C; 1.
SMART; SM00487; DEXDc; 1.
SMART; SM00490; HELICc; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
PROSITE; PS51194; HELICASE_CTER; 1.
PROSITE; PS51195; Q_MOTIF; 1.
3: Inferred from homology;
ATP-binding; Complete proteome; Helicase; Hydrolase;
Nucleotide-binding; Nucleus; Reference proteome; Ribosome biogenesis;
RNA-binding; rRNA processing.
CHAIN 1 450 ATP-dependent RNA helicase FAL1.
/FTId=PRO_0000310175.
DOMAIN 56 226 Helicase ATP-binding.
{ECO:0000255|PROSITE-ProRule:PRU00541}.
DOMAIN 237 398 Helicase C-terminal.
{ECO:0000255|PROSITE-ProRule:PRU00542}.
NP_BIND 69 76 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00541}.
MOTIF 25 53 Q motif.
MOTIF 174 177 DEAD box.
SEQUENCE 450 AA; 51476 MW; 98F43F905E48AB22 CRC64;
MADGIDRTAE ERMEFTTSKE VTVAPTFEDM HLKENLLRGI YAYGYESPSA VQSRAIVQIC
KGRDTIAQAQ SGTGKTATFS ISILQVIDTV LRETQALVLS PTRELATQIQ SVVMALGDYM
NVQCHACIGG TNVGEDIRKL DHGQHVVSGT PGRVADMIRR RHLRTRHIKM LVLDEADELL
NRGFREQIYD VYRYLPPATQ VVVVSATLPY DVLDMTTKFM TDPVRILVKR DELTLEGLKQ
YFIAVEKEEW KFDTLCDLYD TLTITQAVIF CNTRRKVDWL TDKMREANFT VSSMHGEMPQ
KERDSIMQDF RQGNSRVLIS TDVWARGIDV QQVSLVINYD LPSNRENYIH RIGRSGRFGR
KGVAINFVTS EDVRILRDIE LYYSTQIDEM PMNGTLFYLR YRPMSRLSLW LTQSNSCRPS
HVTTLSWSTN VEHTFPLLLM NAFSKIQIGI
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Pathways :
WP1672: Mismatch repair
WP1678: Nucleotide excision repair
WP1493: Carbon assimilation C4 pathway
WP1619: Amino sugar and nucleotide sugar metabolism
WP1625: Base excision repair
WP1676: Non-homologous end-joining
WP2344: vitamin B6 (pyridoxine, pyridoxal, pyridoxamine) biosynthesis and salvage pathway
WP710: DNA damage response (only ATM dependent)
Related Genes :
[DNA2 DNA2L KIAA0083] DNA replication ATP-dependent helicase/nuclease DNA2 (hDNA2) (DNA replication ATP-dependent helicase-like homolog) [Includes: DNA replication nuclease DNA2 (EC 3.1.-.-); DNA replication ATP-dependent helicase DNA2 (EC 3.6.4.12)]
[Dna2 Dna2l Kiaa0083] DNA replication ATP-dependent helicase/nuclease DNA2 (DNA replication ATP-dependent helicase-like homolog) [Includes: DNA replication nuclease DNA2 (EC 3.1.-.-); DNA replication ATP-dependent helicase DNA2 (EC 3.6.4.12)]
[Irbp dp70 YPF1b CG5247] ATP-dependent DNA helicase 2 subunit 1 (EC 3.6.4.12) (ATP-dependent DNA helicase II subunit dp70) (ATP-dependent helicase Irbp) (Inverted repeat-binding protein) (Yolk protein factor 1 subunit beta)
[KU80 At1g48050 F21D18.26 T2J15.4] ATP-dependent DNA helicase 2 subunit KU80 (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 2) (ATP-dependent DNA helicase II 80 kDa subunit)
[KU70 At1g16970 F6I1.2] ATP-dependent DNA helicase 2 subunit KU70 (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 1) (ATP-dependent DNA helicase II 70 kDa subunit)
[dna2 dna2l] DNA replication ATP-dependent helicase/nuclease DNA2 (DNA replication ATP-dependent helicase-like homolog) [Includes: DNA replication nuclease DNA2 (EC 3.1.-.-); DNA replication ATP-dependent helicase DNA2 (EC 3.6.4.12)]
[clpX lopC b0438 JW0428] ATP-dependent Clp protease ATP-binding subunit ClpX (ATP-dependent unfoldase ClpX)
[KU70 Os07g0184900 LOC_Os07g08729 OJ1046_F10.128 OsJ_23357 OsJ_23359] ATP-dependent DNA helicase 2 subunit KU70 (OsKU70) (EC 3.6.4.12) (ATP-dependent DNA helicase 2 subunit 1) (ATP-dependent DNA helicase II 70 kDa subunit)
[PFK2] ATP-dependent 6-phosphofructokinase subunit beta (EC 2.7.1.11) (ATP-dependent 6-phosphofructokinase 2) (ATP-PFK 2) (Phosphofructokinase 2) (Phosphohexokinase 2)
[PFK1 YGR240C G8599] ATP-dependent 6-phosphofructokinase subunit alpha (EC 2.7.1.11) (ATP-dependent 6-phosphofructokinase) (ATP-PFK) (Phosphofructokinase 1) (Phosphohexokinase)
[PFK2 YMR205C YM8325.06C] ATP-dependent 6-phosphofructokinase subunit beta (EC 2.7.1.11) (ATP-dependent 6-phosphofructokinase) (ATP-PFK) (Phosphofructokinase 2) (Phosphohexokinase)
[PFK1 GSA1 PAS_chr2-1_0402] ATP-dependent 6-phosphofructokinase subunit alpha (EC 2.7.1.11) (ATP-dependent 6-phosphofructokinase 1) (ATP-PFK 1) (Phosphofructokinase 1) (Glucose-induced selective autophagy 1 protein) (Phosphohexokinase 1)
[EIF4A3 DDX48 KIAA0111] Eukaryotic initiation factor 4A-III (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13) (ATP-dependent RNA helicase DDX48) (ATP-dependent RNA helicase eIF4A-3) (DEAD box protein 48) (Eukaryotic initiation factor 4A-like NUK-34) (Eukaryotic translation initiation factor 4A isoform 3) (Nuclear matrix protein 265) (NMP 265) (hNMP 265) [Cleaved into: Eukaryotic initiation factor 4A-III, N-terminally processed]
[XRCC6 G22P1] X-ray repair cross-complementing protein 6 (EC 3.6.4.-) (EC 4.2.99.-) (5'-deoxyribose-5-phosphate lyase Ku70) (5'-dRP lyase Ku70) (70 kDa subunit of Ku antigen) (ATP-dependent DNA helicase 2 subunit 1) (ATP-dependent DNA helicase II 70 kDa subunit) (CTC box-binding factor 75 kDa subunit) (CTC75) (CTCBF) (DNA repair protein XRCC6) (Lupus Ku autoantigen protein p70) (Ku70) (Thyroid-lupus autoantigen) (TLAA) (X-ray repair complementing defective repair in Chinese hamster cells 6)
[XRCC5 G22P2] X-ray repair cross-complementing protein 5 (EC 3.6.4.-) (86 kDa subunit of Ku antigen) (ATP-dependent DNA helicase 2 subunit 2) (ATP-dependent DNA helicase II 80 kDa subunit) (CTC box-binding factor 85 kDa subunit) (CTC85) (CTCBF) (DNA repair protein XRCC5) (Ku80) (Ku86) (Lupus Ku autoantigen protein p86) (Nuclear factor IV) (Thyroid-lupus autoantigen) (TLAA) (X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining))
[DNA2 YHR164C] DNA replication ATP-dependent helicase/nuclease DNA2 [Includes: DNA replication nuclease DNA2 (EC 3.1.-.-); DNA replication ATP-dependent helicase DNA2 (EC 3.6.4.12)]
[Eif4a3 Ddx48] Eukaryotic initiation factor 4A-III (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13) (ATP-dependent RNA helicase DDX48) (ATP-dependent RNA helicase eIF4A-3) (DEAD box protein 48) (Eukaryotic translation initiation factor 4A isoform 3) [Cleaved into: Eukaryotic initiation factor 4A-III, N-terminally processed]
[EIF4A3 DDX48] Eukaryotic initiation factor 4A-III (EC 3.6.4.13) (ATP-dependent RNA helicase DDX48) (ATP-dependent RNA helicase eIF4A-3) (DEAD box protein 48) (Eukaryotic translation initiation factor 4A isoform 3) [Cleaved into: Eukaryotic initiation factor 4A-III, N-terminally processed]
[EIF4A3 DDX48] Eukaryotic initiation factor 4A-III (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13) (ATP-dependent RNA helicase DDX48) (ATP-dependent RNA helicase eIF4A-3) (DEAD box protein 48) (Eukaryotic translation initiation factor 4A isoform 3) [Cleaved into: Eukaryotic initiation factor 4A-III, N-terminally processed]
[Eif4a3 Ddx48] Eukaryotic initiation factor 4A-III (eIF-4A-III) (eIF4A-III) (EC 3.6.4.13) (ATP-dependent RNA helicase DDX48) (ATP-dependent RNA helicase eIF4A-3) (DEAD box protein 48) (Eukaryotic translation initiation factor 4A isoform 3) [Cleaved into: Eukaryotic initiation factor 4A-III, N-terminally processed]
[Naxd Carkd] ATP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.93) (ATP-dependent NAD(P)HX dehydratase) (Carbohydrate kinase domain-containing protein) (NAD(P)HX dehydratase)
[DDX6 HLR2 RCK] Probable ATP-dependent RNA helicase DDX6 (EC 3.6.4.13) (ATP-dependent RNA helicase p54) (DEAD box protein 6) (Oncogene RCK)
[Xrcc6 G22p1 Ku70] X-ray repair cross-complementing protein 6 (EC 3.6.4.-) (EC 4.2.99.-) (5'-deoxyribose-5-phosphate lyase Ku70) (5'-dRP/AP lyase Ku70) (ATP-dependent DNA helicase 2 subunit 1) (ATP-dependent DNA helicase II 70 kDa subunit) (CTC box-binding factor 75 kDa subunit) (CTC75) (CTCBF) (DNA repair protein XRCC6) (Ku autoantigen protein p70 homolog) (Ku70)
[Xrcc5 G22p2] X-ray repair cross-complementing protein 5 (EC 3.6.4.-) (ATP-dependent DNA helicase 2 subunit 2) (ATP-dependent DNA helicase II 80 kDa subunit) (CTC box-binding factor 85 kDa subunit) (CTC85) (CTCBF) (DNA repair protein XRCC5) (Ku autoantigen protein p86 homolog) (Ku80) (Nuclear factor IV)
[Ddx6 Hlr2 Rck] Probable ATP-dependent RNA helicase DDX6 (EC 3.6.4.13) (ATP-dependent RNA helicase p54) (DEAD box protein 6) (Oncogene RCK homolog)
[NAXD CARKD] ATP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.93) (ATP-dependent NAD(P)HX dehydratase) (Carbohydrate kinase domain-containing protein) (NAD(P)HX dehydratase)
[SUV3 EDA15 PDD17 PDD26 At4g14790 dl3435c FCAALL.309] DExH-box ATP-dependent RNA helicase DExH16, mitochondrial (EC 3.6.4.13) (ATP-dependent RNA helicase SUV3) (AtSUV3) (Protein EMBRYO SAC DEVELOPMENT ARREST 15) (Protein POLLEN DEVELOPMENT DEFECTIVE 17) (Protein POLLEN DEVELOPMENT DEFECTIVE 26) (Protein SUPPRESSOR OF VAR 3)
[dna2 SPBC16D10.04c] DNA replication ATP-dependent helicase/nuclease dna2 [Includes: DNA replication nuclease dna2 (EC 3.1.-.-); DNA replication ATP-dependent helicase dna2 (EC 3.6.4.12)]
[DDX54] ATP-dependent RNA helicase DDX54 (EC 3.6.4.13) (ATP-dependent RNA helicase DP97) (DEAD box RNA helicase 97 kDa) (DEAD box protein 54)
[YKU70 HDF1 NES24 YMR284W YM8021.10] ATP-dependent DNA helicase II subunit 1 (EC 3.6.4.12) (ATP-dependent DNA helicase II subunit Ku70) (High affinity DNA-binding factor subunit 1)
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