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ATP-dependent RNA helicase FAL1 (EC 3.6.4.13)

 FAL1_CANAL              Reviewed;         399 AA.
Q5A9Z6; A0A1D8PDK9; Q9UVI5;
04-APR-2006, integrated into UniProtKB/Swiss-Prot.
26-APR-2005, sequence version 1.
25-OCT-2017, entry version 73.
RecName: Full=ATP-dependent RNA helicase FAL1;
EC=3.6.4.13;
Name=FAL1; OrderedLocusNames=CAALFM_C105640CA;
ORFNames=CaO19.10024, CaO19.2488;
Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Debaryomycetaceae;
Candida/Lodderomyces clade; Candida.
NCBI_TaxID=237561;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=B2630;
De Backer M.D., Logghe M., Viaene J., Loonen I., Vandoninck S.,
de Hoogt R., Nelissen B., De Waele S., Simons F., Contreras R.,
Luyten W.;
"A novel method for systematic identification of genes required for
growth of Candida albicans.";
Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=SC5314 / ATCC MYA-2876;
PubMed=15123810; DOI=10.1073/pnas.0401648101;
Jones T., Federspiel N.A., Chibana H., Dungan J., Kalman S.,
Magee B.B., Newport G., Thorstenson Y.R., Agabian N., Magee P.T.,
Davis R.W., Scherer S.;
"The diploid genome sequence of Candida albicans.";
Proc. Natl. Acad. Sci. U.S.A. 101:7329-7334(2004).
[3]
GENOME REANNOTATION.
STRAIN=SC5314 / ATCC MYA-2876;
PubMed=17419877; DOI=10.1186/gb-2007-8-4-r52;
van het Hoog M., Rast T.J., Martchenko M., Grindle S., Dignard D.,
Hogues H., Cuomo C., Berriman M., Scherer S., Magee B.B., Whiteway M.,
Chibana H., Nantel A., Magee P.T.;
"Assembly of the Candida albicans genome into sixteen supercontigs
aligned on the eight chromosomes.";
Genome Biol. 8:RESEARCH52.1-RESEARCH52.12(2007).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND GENOME
REANNOTATION.
STRAIN=SC5314 / ATCC MYA-2876;
PubMed=24025428; DOI=10.1186/gb-2013-14-9-r97;
Muzzey D., Schwartz K., Weissman J.S., Sherlock G.;
"Assembly of a phased diploid Candida albicans genome facilitates
allele-specific measurements and provides a simple model for repeat
and indel structure.";
Genome Biol. 14:RESEARCH97.1-RESEARCH97.14(2013).
-!- FUNCTION: ATP-dependent RNA helicase involved in 40S ribosomal
subunit biogenesis. Required for the processing and cleavage of
35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA
(By similarity). {ECO:0000250}.
-!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
-!- SUBCELLULAR LOCATION: Nucleus, nucleolus {ECO:0000250}.
-!- DOMAIN: The Q motif is unique to and characteristic of the DEAD
box family of RNA helicases and controls ATP binding and
hydrolysis.
-!- SIMILARITY: Belongs to the DEAD box helicase family. DDX48/FAL1
subfamily. {ECO:0000305}.
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EMBL; AJ250879; CAB61567.1; -; Genomic_DNA.
EMBL; CP017623; AOW26229.1; -; Genomic_DNA.
RefSeq; XP_718509.1; XM_713416.1.
ProteinModelPortal; Q5A9Z6; -.
SMR; Q5A9Z6; -.
PRIDE; Q5A9Z6; -.
GeneID; 3639839; -.
KEGG; cal:CAALFM_C105640CA; -.
CGD; CAL0000189056; FAL1.
InParanoid; Q5A9Z6; -.
KO; K13025; -.
OrthoDB; EOG092C2B1L; -.
PRO; PR:Q5A9Z6; -.
Proteomes; UP000000559; Chromosome 1.
GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
CDD; cd00079; HELICc; 1.
InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR001650; Helicase_C.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
Pfam; PF00270; DEAD; 1.
Pfam; PF00271; Helicase_C; 1.
SMART; SM00487; DEXDc; 1.
SMART; SM00490; HELICc; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
PROSITE; PS51194; HELICASE_CTER; 1.
PROSITE; PS51195; Q_MOTIF; 1.
3: Inferred from homology;
ATP-binding; Complete proteome; Helicase; Hydrolase;
Nucleotide-binding; Nucleus; Reference proteome; Ribosome biogenesis;
RNA-binding; rRNA processing.
CHAIN 1 399 ATP-dependent RNA helicase FAL1.
/FTId=PRO_0000232143.
DOMAIN 57 227 Helicase ATP-binding.
{ECO:0000255|PROSITE-ProRule:PRU00541}.
DOMAIN 238 399 Helicase C-terminal.
{ECO:0000255|PROSITE-ProRule:PRU00542}.
NP_BIND 70 77 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00541}.
MOTIF 26 54 Q motif.
MOTIF 175 178 DEAD box.
CONFLICT 48 48 T -> A (in Ref. 1; CAB61567).
{ECO:0000305}.
CONFLICT 115 115 K -> M (in Ref. 1; CAB61567).
{ECO:0000305}.
CONFLICT 380 380 F -> L (in Ref. 1; CAB61567).
{ECO:0000305}.
SEQUENCE 399 AA; 45555 MW; BA004123E1196DF1 CRC64;
MDDFDRDLDN ELEFSHKSTK GIKVHRTFES MNLKPDLLKG IYAYGFETPS AIQSRAIMQI
ISGRDTIAQA QSGTGKTATF SIGMLEVIDT KSKECQALIL SPTRELAIQI QNVVKHLGDY
MNIHTHACIG GKNVGEDVKK LQQGQQIVSG TPGRVIDVIK RRNLQTRNIK VLILDEADEL
FTKGFKEQIY EIYKHLPPSV QVVVVSATLP REVLEMTSKF TTDPVKILVK RDEISLSGIK
QYYVQCERED WKFDTLCDLY DNLTITQAVI FCNTKLKVNW LADQMKKQNF TVVAMHGDMK
QDERDSIMND FRRGNSRVLI STDVWARGID VQQVSLVINY DLPTDKENYI HRIGRSGRFG
RKGTAINLIT KDDVVTLKEF EKYYSTKIKE MPMNINDIM


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