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ATP-dependent chromatin assembly factor large subunit (EC 2.3.1.48)

 Q9V9T4_DROME            Unreviewed;      1476 AA.
Q9V9T4;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-MAY-2000, sequence version 1.
25-OCT-2017, entry version 138.
SubName: Full=ATP-dependent chromatin assembly factor large subunit {ECO:0000313|EMBL:AAF57200.1};
EC=2.3.1.48 {ECO:0000313|EMBL:AAF57200.1};
Name=Acf {ECO:0000313|EMBL:AAF57200.1,
ECO:0000313|FlyBase:FBgn0027620};
Synonyms=175K protein {ECO:0000313|EMBL:AAF57200.1},
ACF {ECO:0000313|EMBL:AAF57200.1},
Acf-1 {ECO:0000313|EMBL:AAF57200.1},
ACF1 {ECO:0000313|EMBL:AAF57200.1},
Acf1 {ECO:0000313|EMBL:AAF57200.1},
acf1 {ECO:0000313|EMBL:AAF57200.1}, CAF {ECO:0000313|EMBL:AAF57200.1},
CG1966 {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|FlyBase:FBgn0027620},
CHRAC {ECO:0000313|EMBL:AAF57200.1},
CHRAC-175 {ECO:0000313|EMBL:AAF57200.1},
dACF {ECO:0000313|EMBL:AAF57200.1},
dCHRAC {ECO:0000313|EMBL:AAF57200.1},
Dmel\CG1966 {ECO:0000313|EMBL:AAF57200.1},
p170 {ECO:0000313|EMBL:AAF57200.1},
p175 {ECO:0000313|EMBL:AAF57200.1},
p185 {ECO:0000313|EMBL:AAF57200.1};
ORFNames=Dmel_CG1966 {ECO:0000313|EMBL:AAF57200.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:AAF57200.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PROSITE-
ProRule:PRU00475}.
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EMBL; AE014297; AAF57200.1; -; Genomic_DNA.
RefSeq; NP_536734.2; NM_080486.3.
ProteinModelPortal; Q9V9T4; -.
SMR; Q9V9T4; -.
IntAct; Q9V9T4; 6.
MINT; MINT-1328832; -.
STRING; 7227.FBpp0085204; -.
PaxDb; Q9V9T4; -.
PRIDE; Q9V9T4; -.
EnsemblMetazoa; FBtr0085845; FBpp0085204; FBgn0027620.
GeneID; 43751; -.
KEGG; dme:Dmel_CG1966; -.
UCSC; CG1966-RA; d. melanogaster.
CTD; 387569; -.
FlyBase; FBgn0027620; Acf.
eggNOG; KOG1245; Eukaryota.
eggNOG; COG5076; LUCA.
GeneTree; ENSGT00760000119099; -.
InParanoid; Q9V9T4; -.
KO; K11655; -.
OMA; INSTVWQ; -.
OrthoDB; EOG091G06JE; -.
PhylomeDB; Q9V9T4; -.
GenomeRNAi; 43751; -.
Proteomes; UP000000803; Chromosome 3R.
Bgee; FBgn0027620; -.
Genevisible; Q9V9T4; DM.
GO; GO:0016590; C:ACF complex; IDA:FlyBase.
GO; GO:0008623; C:CHRAC; IDA:FlyBase.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0003677; F:DNA binding; IDA:FlyBase.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0070615; F:nucleosome-dependent ATPase activity; IDA:FlyBase.
GO; GO:0016746; F:transferase activity, transferring acyl groups; IEA:UniProtKB-KW.
GO; GO:0031497; P:chromatin assembly; IDA:FlyBase.
GO; GO:0006333; P:chromatin assembly or disassembly; TAS:FlyBase.
GO; GO:0048813; P:dendrite morphogenesis; IMP:FlyBase.
GO; GO:0008544; P:epidermis development; IMP:FlyBase.
GO; GO:0007517; P:muscle organ development; IMP:FlyBase.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:FlyBase.
GO; GO:0007399; P:nervous system development; IMP:FlyBase.
GO; GO:0048666; P:neuron development; IMP:FlyBase.
GO; GO:0006334; P:nucleosome assembly; IDA:FlyBase.
GO; GO:0042766; P:nucleosome mobilization; IDA:FlyBase.
GO; GO:0016584; P:nucleosome positioning; IDA:FlyBase.
GO; GO:0043462; P:regulation of ATPase activity; IDA:FlyBase.
GO; GO:0031445; P:regulation of heterochromatin assembly; IMP:FlyBase.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IDA:FlyBase.
Gene3D; 1.20.920.10; -; 1.
Gene3D; 3.30.40.10; -; 2.
InterPro; IPR001487; Bromodomain.
InterPro; IPR036427; Bromodomain-like_sf.
InterPro; IPR018501; DDT_dom.
InterPro; IPR028941; WHIM2_dom.
InterPro; IPR013136; WSTF_Acf1_Cbp146.
InterPro; IPR019786; Zinc_finger_PHD-type_CS.
InterPro; IPR011011; Znf_FYVE_PHD.
InterPro; IPR001965; Znf_PHD.
InterPro; IPR019787; Znf_PHD-finger.
InterPro; IPR013083; Znf_RING/FYVE/PHD.
Pfam; PF00439; Bromodomain; 1.
Pfam; PF00628; PHD; 1.
Pfam; PF10537; WAC_Acf1_DNA_bd; 1.
Pfam; PF15613; WSD; 1.
PRINTS; PR00503; BROMODOMAIN.
SMART; SM00297; BROMO; 1.
SMART; SM00571; DDT; 1.
SMART; SM00249; PHD; 2.
SUPFAM; SSF47370; SSF47370; 1.
SUPFAM; SSF57903; SSF57903; 2.
PROSITE; PS50014; BROMODOMAIN_2; 1.
PROSITE; PS50827; DDT; 1.
PROSITE; PS51136; WAC; 1.
PROSITE; PS01359; ZF_PHD_1; 2.
PROSITE; PS50016; ZF_PHD_2; 1.
1: Evidence at protein level;
Acyltransferase {ECO:0000313|EMBL:AAF57200.1};
Bromodomain {ECO:0000256|PROSITE-ProRule:PRU00035};
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00146,
ECO:0000256|SAAS:SAAS00592111};
Nucleus {ECO:0000256|PROSITE-ProRule:PRU00475};
Proteomics identification {ECO:0000213|PeptideAtlas:Q9V9T4};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Transferase {ECO:0000313|EMBL:AAF57200.1};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00146,
ECO:0000256|SAAS:SAAS00592111};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00146,
ECO:0000256|SAAS:SAAS00592111}.
DOMAIN 25 131 WAC. {ECO:0000259|PROSITE:PS51136}.
DOMAIN 346 411 DDT. {ECO:0000259|PROSITE:PS50827}.
DOMAIN 1062 1112 PHD-type. {ECO:0000259|PROSITE:PS50016}.
DOMAIN 1373 1443 Bromo. {ECO:0000259|PROSITE:PS50014}.
COILED 269 329 {ECO:0000256|SAM:Coils}.
SEQUENCE 1476 AA; 170412 MW; 9EE1906672E5B006 CRC64;
MPICKREGFD LNQKEGKNET FHDNDQVFCC YITKRIFRDY EHYFRHVMVI NSTVWQCEAT
GKENLTYEEA VKSERAARKK MEQFKQSLRA PVLLVVEHAQ QSAVNTLNMI VAKFLRKRYF
IGEEVSVQAK KNATYTVLGV KLDKNMPEPL NGIYEDTDNL VYRLRPNKGD PSAELDLPFR
QLRRSRMEFN LENLSMFIKS NVSRVDGLLR PKPEAYKQYV TDPGVNFSTI FIGKMPRYSP
AKIKKPDGKK QSTLNKYIVA GEATAAKSKA KAKSDAKSLA EELERVKREK EAKLIELEKQ
KAEKKAQLIE RVENECNLLL QKTDDLERTD QKVLPRYRQI VTLLPEHLLG DAFMMREFMH
TYTGLLSGIE VFRQNLSFYE MTRALTAREI AGPLSDILLV LLGTVFDLQK EEEEECAVTY
LDRAAQTQEP YWSMAQAAKS HLYAKRHFSF KVNELPLDAL TLSEVLRLHL LGSGAFVNEK
AERWRVMYRN GYSSKEDPGL ELRLEHSHIL RILKNHSVYQ LKFKDIMLLI RCLMSQIMTY
SGTINLIEER MEQTAKARQD LRALVVGENK RLAAVEINRK KLTQMHHLEV NGVEPEKREA
LVEKLKKSIA ELHAQSDQQH RKHELQMLKL HSQLFNFLVY LGMDRCYRKY YVLESMPGIF
VEHSPDSLDT CLEQPITNKS QIEIRQQSAL PKNRKDLRVY LLKLYGDDEK KTKKKAKHSL
ENKENQEHRL NGSAEPMDVE SDSPEAPTHF ELLMCSGDKR SCIVHDSRNG QRQRWAYIYK
AEEIDELIKA LNPNGLREYE LLQELSVLRS LIEQHAKTCP VDLLSLENET MRKKFMAAME
SETNRKYGEA NFGLPNGTDL NEVMRLHLVD RIIQFENDIY TGDLGRLKVK DMEKWRSDLL
GGNYDAQCKL QWGPGGKLED EAGSDNESHE THEEDDGALL GKYARKPYRD PGMYLAASAD
TKPLPDSDDE EDQHTNAVSI PIAVHNMASA LLQVEQAIGK RFLKEPYGMK KWDPKQEALK
LACDSRLHQW EVSLMESTSF AQVFLHLNIL HDCIQWRRST NKSLCKVCRR GSDPEKMLLC
DECNAGTHMF CLKPKLRSVP PGNWYCNDCV KSLGLSNGQN EKDKKQATKK KRKFIVEEED
DEATDEEEEE KKDDDMTDED AEHENEKHDE DVEDDESVTS TPSSSRVNGR ILRRPRTRPT
SRRLTSKEIE EHAQEDVDSG DVSDDASLTA GEDTIEDESD EEKVCQKCFY DGGEIKCVQC
RLFFHLECVH LKRPPRTDFV CKTCKPMPQR PRRRHSNMNG DHDRDEEEPK AKRPRNSLRL
SIDKTARPSN GNNNNNNNNS SVNNNNHRRS GRRTNEHMPL NSAALYDLLE QIMKHKAAWP
FLRPVLTSEV PDYHQIIKTP MDLAKIKSKL NMGAYQLNEE LLSDIQLVFR NCDLYNVEGN
EIYDAGCQLE RFVIDRCRDM QLPFRPSDMN GEVKAC


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