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Actin-depolymerizing factor 12 (ADF-12) (AtADF12)

 ADF12_ARATH             Reviewed;         137 AA.
Q8LFH6; A6QRD0; Q9FHC4;
20-FEB-2007, integrated into UniProtKB/Swiss-Prot.
20-FEB-2007, sequence version 2.
25-APR-2018, entry version 102.
RecName: Full=Actin-depolymerizing factor 12;
Short=ADF-12;
Short=AtADF12;
Name=ADF12 {ECO:0000303|PubMed:16360805};
Synonyms=ADF10 {ECO:0000303|PubMed:21632657};
OrderedLocusNames=At5g52360; ORFNames=K24M7.10;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10718197; DOI=10.1093/dnares/7.1.31;
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
features of the regions of 3,076,755 bp covered by sixty P1 and TAC
clones.";
DNA Res. 7:31-63(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Bautista-Mercan V.R., Kim C.J., Chen H., Quan R., De Los Reyes C.,
Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[5]
GENE FAMILY.
PubMed=16360805; DOI=10.1016/j.jplph.2005.01.015;
Feng Y., Liu Q., Xue Q.;
"Comparative study of rice and Arabidopsis actin-depolymerizing
factors gene families.";
J. Plant Physiol. 163:69-79(2006).
[6]
SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
PubMed=21632657; DOI=10.1093/pcp/pcr068;
Bou Daher F., van Oostende C., Geitmann A.;
"Spatial and temporal expression of actin depolymerizing factors ADF7
and ADF10 during male gametophyte development in Arabidopsis
thaliana.";
Plant Cell Physiol. 52:1177-1192(2011).
-!- FUNCTION: Actin-depolymerizing protein. Severs actin filaments (F-
actin) and binds to actin monomers.
{ECO:0000250|UniProtKB:Q39251}.
-!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton
{ECO:0000269|PubMed:21632657}. Note=In germinating pollen grains
and elongating pollen tubes, associates with the subapical actin
fringe. {ECO:0000269|PubMed:21632657}.
-!- TISSUE SPECIFICITY: Specifically expressed in pollen.
{ECO:0000269|PubMed:21632657}.
-!- DEVELOPMENTAL STAGE: During male gametophyte development,
expressed at the polarized microspore stage, bicellular stage,
mature pollen stage, anthesis stage and open flower stage.
Expressed in germinating pollen grains and elongating pollen
tubes. {ECO:0000269|PubMed:21632657}.
-!- SIMILARITY: Belongs to the actin-binding proteins ADF family.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=BAB10533.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AB019226; BAB10533.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002688; AED96205.1; -; Genomic_DNA.
EMBL; BT030653; ABR46233.1; -; mRNA.
EMBL; AY084837; AAM61402.1; -; mRNA.
RefSeq; NP_568769.1; NM_124615.4.
UniGene; At.29619; -.
ProteinModelPortal; Q8LFH6; -.
SMR; Q8LFH6; -.
STRING; 3702.AT5G52360.1; -.
PaxDb; Q8LFH6; -.
EnsemblPlants; AT5G52360.1; AT5G52360.1; AT5G52360.
GeneID; 835312; -.
Gramene; AT5G52360.1; AT5G52360.1; AT5G52360.
KEGG; ath:AT5G52360; -.
Araport; AT5G52360; -.
TAIR; locus:2156727; AT5G52360.
eggNOG; KOG1735; Eukaryota.
eggNOG; ENOG41122P5; LUCA.
HOGENOM; HOG000039697; -.
InParanoid; Q8LFH6; -.
KO; K05765; -.
OMA; WAPDTSK; -.
OrthoDB; EOG09360QSQ; -.
PhylomeDB; Q8LFH6; -.
PRO; PR:Q8LFH6; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q8LFH6; baseline and differential.
Genevisible; Q8LFH6; AT.
GO; GO:0005884; C:actin filament; IDA:TAIR.
GO; GO:0048046; C:apoplast; IDA:TAIR.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
GO; GO:0003779; F:actin binding; IDA:TAIR.
GO; GO:0030042; P:actin filament depolymerization; IDA:TAIR.
GO; GO:0009860; P:pollen tube growth; IMP:TAIR.
CDD; cd11286; ADF_cofilin_like; 1.
Gene3D; 3.40.20.10; -; 1.
InterPro; IPR002108; ADF-H.
InterPro; IPR029006; ADF-H/Gelsolin-like_dom_sf.
InterPro; IPR017904; ADF/Cofilin.
PANTHER; PTHR11913; PTHR11913; 1.
Pfam; PF00241; Cofilin_ADF; 1.
SMART; SM00102; ADF; 1.
PROSITE; PS51263; ADF_H; 1.
2: Evidence at transcript level;
Actin-binding; Complete proteome; Cytoplasm; Cytoskeleton;
Phosphoprotein; Reference proteome.
CHAIN 1 137 Actin-depolymerizing factor 12.
/FTId=PRO_0000278103.
DOMAIN 7 137 ADF-H. {ECO:0000255|PROSITE-
ProRule:PRU00599}.
MOD_RES 6 6 Phosphoserine.
{ECO:0000250|UniProtKB:Q39250}.
CONFLICT 136 136 A -> T (in Ref. 4; AAM61402).
{ECO:0000305}.
SEQUENCE 137 AA; 15884 MW; 0E5DB2C913CADE3F CRC64;
MANAASGMAV EDECKLKFLE LKAKRNYRFI IFRIDGQQVV VEKLGSPQEN YDDFTNYLPP
NECRYAVYDF DFTTAENIQK SKIFFIAWSP DSSRVRMKMV YASSKDRFKR ELDGIQVELQ
ATDPSEMSLD IIKSRAL


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