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Acyl-[acyl-carrier-protein] desaturase (EC 1.14.19.-)

 F4IS32_ARATH            Unreviewed;       401 AA.
F4IS32;
28-JUN-2011, integrated into UniProtKB/TrEMBL.
28-JUN-2011, sequence version 1.
10-OCT-2018, entry version 64.
RecName: Full=Acyl-[acyl-carrier-protein] desaturase {ECO:0000256|RuleBase:RU000582};
EC=1.14.19.- {ECO:0000256|RuleBase:RU000582};
Name=SSI2 {ECO:0000313|EMBL:AEC10310.1};
Synonyms=AtSSI2 {ECO:0000313|EMBL:AEC10310.1},
FAB2 {ECO:0000313|EMBL:AEC10310.1},
FATTY ACID BIOSYNTHESIS 2 {ECO:0000313|EMBL:AEC10310.1},
LDW1 {ECO:0000313|EMBL:AEC10310.1},
lesion dwarf mimic 1 {ECO:0000313|EMBL:AEC10310.1},
suppressor of SA insensitive 2 {ECO:0000313|EMBL:AEC10310.1};
OrderedLocusNames=At2g43710 {ECO:0000313|Araport:AT2G43710,
ECO:0000313|EMBL:AEC10310.1};
ORFNames=F18O19.18 {ECO:0000313|EMBL:AEC10310.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702 {ECO:0000313|EMBL:AEC10310.1, ECO:0000313|Proteomes:UP000006548};
[1] {ECO:0000313|EMBL:AEC10310.1, ECO:0000313|Proteomes:UP000006548}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S., Shea T.P., Benito M.I., Town C.D.,
Fujii C.Y., Mason T., Bowman C.L., Barnstead M., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J., Ronning C.M., Koo H.L., Moffat K.S.,
Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[2] {ECO:0000213|PubMed:22223895}
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22223895; DOI=10.1074/mcp.M111.015131;
Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C.,
Meinnel T., Giglione C.;
"Comparative large scale characterization of plant versus mammal
proteins reveals similar and idiosyncratic N-alpha-acetylation
features.";
Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012).
[3] {ECO:0000313|Proteomes:UP000006548}
GENOME REANNOTATION.
STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
-!- FUNCTION: Introduction of a cis double bond between carbons of the
acyl chain. {ECO:0000256|RuleBase:RU000582}.
-!- COFACTOR:
Name=Fe cation; Xref=ChEBI:CHEBI:24875;
Evidence={ECO:0000256|PIRSR:PIRSR000346-1};
Note=Binds 2 iron ions per subunit.
{ECO:0000256|PIRSR:PIRSR000346-1};
-!- COFACTOR:
Name=Fe(2+); Xref=ChEBI:CHEBI:29033;
Evidence={ECO:0000256|RuleBase:RU000582};
Note=Binds 2 Fe(2+) ions per subunit.
{ECO:0000256|RuleBase:RU000582};
-!- SUBUNIT: Homodimer. {ECO:0000256|RuleBase:RU000582}.
-!- SIMILARITY: Belongs to the fatty acid desaturase type 2 family.
{ECO:0000256|RuleBase:RU000582}.
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EMBL; CP002685; AEC10310.1; -; Genomic_DNA.
RefSeq; NP_850400.1; NM_180069.1.
UniGene; At.22018; -.
ProteinModelPortal; F4IS32; -.
SMR; F4IS32; -.
PRIDE; F4IS32; -.
EnsemblPlants; AT2G43710.2; AT2G43710.2; AT2G43710.
GeneID; 818973; -.
Gramene; AT2G43710.2; AT2G43710.2; AT2G43710.
Araport; AT2G43710; -.
TAIR; locus:2043899; AT2G43710.
eggNOG; ENOG410IF20; Eukaryota.
eggNOG; ENOG410XPNS; LUCA.
OrthoDB; EOG09360B5J; -.
PhylomeDB; F4IS32; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; F4IS32; baseline and differential.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0009570; C:chloroplast stroma; IDA:TAIR.
GO; GO:0009534; C:chloroplast thylakoid; IDA:TAIR.
GO; GO:0009536; C:plastid; TAS:TAIR.
GO; GO:0045300; F:acyl-[acyl-carrier-protein] desaturase activity; IMP:TAIR.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0004768; F:stearoyl-CoA 9-desaturase activity; IDA:TAIR.
GO; GO:0042742; P:defense response to bacterium; IMP:TAIR.
GO; GO:0002213; P:defense response to insect; IMP:TAIR.
GO; GO:0051607; P:defense response to virus; IMP:TAIR.
GO; GO:0006631; P:fatty acid metabolic process; IDA:TAIR.
GO; GO:0008610; P:lipid biosynthetic process; IMP:TAIR.
GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; TAS:TAIR.
GO; GO:2000031; P:regulation of salicylic acid mediated signaling pathway; TAS:TAIR.
GO; GO:0006636; P:unsaturated fatty acid biosynthetic process; TAS:TAIR.
CDD; cd01050; Acyl_ACP_Desat; 1.
Gene3D; 1.10.620.20; -; 1.
InterPro; IPR005803; FADS-2_CS.
InterPro; IPR005067; Fatty_acid_desaturase-2.
InterPro; IPR009078; Ferritin-like_SF.
InterPro; IPR012348; RNR-like.
PANTHER; PTHR31155; PTHR31155; 1.
Pfam; PF03405; FA_desaturase_2; 1.
PIRSF; PIRSF000346; Dlt9_acylACP_des; 1.
SUPFAM; SSF47240; SSF47240; 1.
PROSITE; PS00574; FATTY_ACID_DESATUR_2; 1.
1: Evidence at protein level;
Chloroplast {ECO:0000256|RuleBase:RU000582};
Complete proteome {ECO:0000313|Proteomes:UP000006548};
Fatty acid biosynthesis {ECO:0000256|RuleBase:RU000582};
Fatty acid metabolism {ECO:0000256|RuleBase:RU000582};
Iron {ECO:0000256|PIRSR:PIRSR000346-1};
Lipid biosynthesis {ECO:0000256|RuleBase:RU000582};
Lipid metabolism {ECO:0000256|RuleBase:RU000582};
Metal-binding {ECO:0000256|PIRSR:PIRSR000346-1};
Oxidoreductase {ECO:0000256|RuleBase:RU000582};
Plastid {ECO:0000256|RuleBase:RU000582};
Reference proteome {ECO:0000313|Proteomes:UP000006548}.
METAL 143 143 Iron 1. {ECO:0000256|PIRSR:PIRSR000346-
1}.
METAL 181 181 Iron 1. {ECO:0000256|PIRSR:PIRSR000346-
1}.
METAL 181 181 Iron 2. {ECO:0000256|PIRSR:PIRSR000346-
1}.
METAL 184 184 Iron 1; via pros nitrogen.
{ECO:0000256|PIRSR:PIRSR000346-1}.
METAL 234 234 Iron 2. {ECO:0000256|PIRSR:PIRSR000346-
1}.
METAL 267 267 Iron 1. {ECO:0000256|PIRSR:PIRSR000346-
1}.
METAL 267 267 Iron 2. {ECO:0000256|PIRSR:PIRSR000346-
1}.
METAL 270 270 Iron 2; via pros nitrogen.
{ECO:0000256|PIRSR:PIRSR000346-1}.
SEQUENCE 401 AA; 45651 MW; CAF5A54E48605DC5 CRC64;
MALKFNPLVA SQPYKFPSST RPPTPSFRSP KFLCLASSSP ALSSGPKSVE SLKKPFTPPR
EVHVQVLHSM PPQKIEIFKS MENWAEENLL IHLKDVEKSW QPQDFLPDPA SDGFEDQVRE
LRERARELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASPTSW AIWTRAWTAE
ENRHGDLLNK YLYLSGRVDM RQIEKTIQYL IGSGMDPRTE NNPYLGFIYT SFQERATFIS
HGNTARQAKE HGDIKLAQIC GTIAADEKRH ETAYTKIVEK LFEIDPDGTV MAFADMMRKK
ISMPAHLMYD GRNDNLFDNF SSVAQRLGVY TAKDYADILE FLVGRWKIQD LTGLSGEGNK
AQDYLCGLAP RIKRLDERAQ ARAKKGPKIP FSWIHDREVQ L


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