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Ammonium transporter 1 member 3 (AtAMT1;3)

 AMT13_ARATH             Reviewed;         498 AA.
Q9SQH9; Q0WSW8; Q9LK15;
26-JUL-2002, integrated into UniProtKB/Swiss-Prot.
26-JUN-2007, sequence version 2.
20-DEC-2017, entry version 116.
RecName: Full=Ammonium transporter 1 member 3;
Short=AtAMT1;3;
Name=AMT1-3; OrderedLocusNames=At3g24300; ORFNames=K7M2.7;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
STRAIN=cv. C24; TISSUE=Seed;
PubMed=10330477; DOI=10.1105/tpc.11.5.937;
Gazzarrini S., Lejay L., Gojon A., Ninnemann O., Frommer W.B.,
von Wiren N.;
"Three functional transporters for constitutive, diurnally regulated,
and starvation-induced uptake of ammonium into Arabidopsis roots.";
Plant Cell 11:937-948(1999).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10907853; DOI=10.1093/dnares/7.3.217;
Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. II.
Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC
and BAC clones.";
DNA Res. 7:217-221(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[5]
FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION.
PubMed=17026539; DOI=10.1111/j.1365-313X.2006.02887.x;
Loque D., Yuan L., Kojima S., Gojon A., Wirth J., Gazzarrini S.,
Ishiyama K., Takahashi H., von Wiren N.;
"Additive contribution of AMT1;1 and AMT1;3 to high-affinity ammonium
uptake across the plasma membrane of nitrogen-deficient Arabidopsis
roots.";
Plant J. 48:522-534(2006).
-!- FUNCTION: Ammonium transporter probably involved in ammonium
uptake from the soil. Contributes with AMT1-1 to the overall
ammonium uptake capacity in roots under nitrogen-deficiency
conditions. {ECO:0000269|PubMed:17026539}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:17026539};
Multi-pass membrane protein {ECO:0000269|PubMed:17026539}.
-!- TISSUE SPECIFICITY: Highly expressed in roots. Expressed in root
tips, root hairs, root epidermis, rhizodermis and cortex.
{ECO:0000269|PubMed:10330477, ECO:0000269|PubMed:17026539}.
-!- INDUCTION: By nitrogen deprivation. Highest expression at the end
of the light period. {ECO:0000269|PubMed:17026539}.
-!- SIMILARITY: Belongs to the ammonia transporter channel (TC
1.A.11.2) family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAD54638.1; Type=Frameshift; Positions=494; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AF083035; AAD54638.1; ALT_FRAME; mRNA.
EMBL; AP000382; BAB02929.1; -; Genomic_DNA.
EMBL; CP002686; AEE76886.1; -; Genomic_DNA.
EMBL; AK227798; BAE99780.1; -; mRNA.
RefSeq; NP_189073.1; NM_113336.3.
UniGene; At.5885; -.
ProteinModelPortal; Q9SQH9; -.
BioGrid; 7350; 3.
STRING; 3702.AT3G24300.1; -.
TCDB; 1.A.11.2.13; the ammonium transporter channel (amt) family.
iPTMnet; Q9SQH9; -.
PaxDb; Q9SQH9; -.
EnsemblPlants; AT3G24300.1; AT3G24300.1; AT3G24300.
GeneID; 822018; -.
Gramene; AT3G24300.1; AT3G24300.1; AT3G24300.
KEGG; ath:AT3G24300; -.
Araport; AT3G24300; -.
TAIR; locus:2087173; AT3G24300.
eggNOG; KOG0682; Eukaryota.
eggNOG; COG0004; LUCA.
HOGENOM; HOG000017735; -.
InParanoid; Q9SQH9; -.
KO; K03320; -.
OMA; IFFMHAG; -.
OrthoDB; EOG093609QB; -.
PhylomeDB; Q9SQH9; -.
BioCyc; ARA:AT3G24300-MONOMER; -.
BioCyc; MetaCyc:AT3G24300-MONOMER; -.
SABIO-RK; Q9SQH9; -.
PRO; PR:Q9SQH9; -.
Proteomes; UP000006548; Chromosome 3.
ExpressionAtlas; Q9SQH9; baseline and differential.
Genevisible; Q9SQH9; AT.
GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
GO; GO:0005886; C:plasma membrane; IDA:TAIR.
GO; GO:0008519; F:ammonium transmembrane transporter activity; IMP:TAIR.
GO; GO:0015696; P:ammonium transport; IMP:TAIR.
GO; GO:0080181; P:lateral root branching; IMP:TAIR.
GO; GO:0010311; P:lateral root formation; IMP:TAIR.
GO; GO:0015695; P:organic cation transport; IBA:GO_Central.
Gene3D; 1.10.3430.10; -; 1.
InterPro; IPR029020; Ammonium/urea_transptr.
InterPro; IPR001905; Ammonium_transpt.
InterPro; IPR018047; Ammonium_transpt_CS.
InterPro; IPR024041; NH4_transpt_AmtB-like_dom.
Pfam; PF00909; Ammonium_transp; 1.
SUPFAM; SSF111352; SSF111352; 1.
TIGRFAMs; TIGR00836; amt; 1.
PROSITE; PS01219; AMMONIUM_TRANSP; 1.
2: Evidence at transcript level;
Ammonia transport; Cell membrane; Complete proteome; Membrane;
Phosphoprotein; Reference proteome; Transmembrane;
Transmembrane helix; Transport.
CHAIN 1 498 Ammonium transporter 1 member 3.
/FTId=PRO_0000139745.
TRANSMEM 50 70 Helical. {ECO:0000255}.
TRANSMEM 85 105 Helical. {ECO:0000255}.
TRANSMEM 131 151 Helical. {ECO:0000255}.
TRANSMEM 156 176 Helical. {ECO:0000255}.
TRANSMEM 203 223 Helical. {ECO:0000255}.
TRANSMEM 247 267 Helical. {ECO:0000255}.
TRANSMEM 315 335 Helical. {ECO:0000255}.
TRANSMEM 337 357 Helical. {ECO:0000255}.
TRANSMEM 370 390 Helical. {ECO:0000255}.
TRANSMEM 423 443 Helical. {ECO:0000255}.
MOD_RES 464 464 Phosphothreonine.
{ECO:0000250|UniProtKB:P54144}.
MOD_RES 487 487 Phosphoserine.
{ECO:0000250|UniProtKB:P54144}.
SEQUENCE 498 AA; 53298 MW; 551067158A7590F0 CRC64;
MSGAITCSAA DLATLLGPNA TAAADYICGQ LGTVNNKFTD AAFAIDNTYL LFSAYLVFAM
QLGFAMLCAG SVRAKNTMNI MLTNVLDAAA GGLFYYLFGY AFAFGGSSEG FIGRHNFALR
DFPTPTADYS FFLYQWAFAI AAAGITSGSI AERTQFVAYL IYSSFLTGFV YPVVSHWFWS
PDGWASPFRS ADDRLFSTGA IDFAGSGVVH MVGGIAGLWG ALIEGPRRGR FEKGGRAIAL
RGHSASLVVL GTFLLWFGWY GFNPGSFTKI LVPYNSGSNY GQWSGIGRTA VNTTLSGCTA
ALTTLFGKRL LSGHWNVTDV CNGLLGGFAA ITAGCSVVEP WAAIVCGFMA SVVLIGCNKL
AELVQYDDPL EAAQLHGGCG AWGLIFVGLF AKEKYLNEVY GATPGRPYGL FMGGGGKLLG
AQLVQILVIV GWVSATMGTL FFILKRLNLL RISEQHEMQG MDMTRHGGFA YIYHDNDDES
HRVDPGSPFP RSATPPRV


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