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Ammonium transporter 2 (AtAMT2)

 AMT2_ARATH              Reviewed;         475 AA.
Q9M6N7; Q1JPN2;
26-JUL-2002, integrated into UniProtKB/Swiss-Prot.
24-MAY-2004, sequence version 2.
25-APR-2018, entry version 121.
RecName: Full=Ammonium transporter 2;
Short=AtAMT2;
Name=AMT2; OrderedLocusNames=At2g38290; ORFNames=F16M14.22;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND CHARACTERIZATION.
STRAIN=cv. C24; TISSUE=Root;
PubMed=10675553; DOI=10.1016/S0014-5793(00)01153-4;
Sohlenkamp C., Shelden M.C., Howitt S.M., Udvardi M.K.;
"Characterization of Arabidopsis AtAMT2, a novel ammonium transporter
in plants.";
FEBS Lett. 467:273-278(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
Shinn P., Chen H., Kim C.J., Quinitio C., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
PubMed=14993207; DOI=10.1101/gr.1515604;
Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G.,
Caboche M., Weissenbach J., Salanoubat M.;
"Whole genome sequence comparisons and 'full-length' cDNA sequences: a
combined approach to evaluate and improve Arabidopsis genome
annotation.";
Genome Res. 14:406-413(2004).
[7]
FUNCTION, BIOPHYSICOCHEMICAL PROPERTIES, SUBCELLULAR LOCATION, TISSUE
SPECIFICITY, AND INDUCTION.
PubMed=12481062; DOI=10.1104/pp.008599;
Sohlenkamp C., Wood C.C., Roeb G.W., Udvardi M.K.;
"Characterization of Arabidopsis AtAMT2, a high-affinity ammonium
transporter of the plasma membrane.";
Plant Physiol. 130:1788-1796(2002).
-!- FUNCTION: High affinity ammonium transporter that may play an
important role in moving ammonium between the apoplast and
symplast of cells throughout the plant. Does not transport
methylammonium. {ECO:0000269|PubMed:12481062}.
-!- BIOPHYSICOCHEMICAL PROPERTIES:
Kinetic parameters:
KM=21 uM for ammonium chloride (at external pH 6.1)
{ECO:0000269|PubMed:12481062};
Note=Measured in yeast knockout mutant YCW012.;
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:12481062};
Multi-pass membrane protein {ECO:0000269|PubMed:12481062}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9M6N7-1; Sequence=Displayed;
Name=2;
IsoId=Q9M6N7-2; Sequence=VSP_038202;
Note=No experimental confirmation available.;
-!- TISSUE SPECIFICITY: Higher expression in shoots than roots.
{ECO:0000269|PubMed:12481062}.
-!- INDUCTION: By nitrogen deprivation in roots.
{ECO:0000269|PubMed:12481062}.
-!- SIMILARITY: Belongs to the ammonia transporter channel (TC
1.A.11.2) family. {ECO:0000305}.
-----------------------------------------------------------------------
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-----------------------------------------------------------------------
EMBL; AF182039; AAF37192.1; -; mRNA.
EMBL; AC003028; AAM14857.1; -; Genomic_DNA.
EMBL; CP002685; AEC09518.1; -; Genomic_DNA.
EMBL; CP002685; AEC09519.1; -; Genomic_DNA.
EMBL; BT025321; ABF57277.1; -; mRNA.
EMBL; AK226212; BAE98377.1; -; mRNA.
EMBL; BX819203; -; NOT_ANNOTATED_CDS; mRNA.
PIR; T01260; T01260.
RefSeq; NP_181363.1; NM_129385.5. [Q9M6N7-1]
RefSeq; NP_973634.1; NM_201905.1. [Q9M6N7-2]
UniGene; At.11996; -.
UniGene; At.70096; -.
ProteinModelPortal; Q9M6N7; -.
BioGrid; 3751; 4.
STRING; 3702.AT2G38290.1; -.
TCDB; 1.A.11.2.2; the ammonium transporter channel (amt) family.
PaxDb; Q9M6N7; -.
PRIDE; Q9M6N7; -.
EnsemblPlants; AT2G38290.1; AT2G38290.1; AT2G38290. [Q9M6N7-1]
EnsemblPlants; AT2G38290.2; AT2G38290.2; AT2G38290. [Q9M6N7-2]
GeneID; 818409; -.
Gramene; AT2G38290.1; AT2G38290.1; AT2G38290. [Q9M6N7-1]
Gramene; AT2G38290.2; AT2G38290.2; AT2G38290. [Q9M6N7-2]
KEGG; ath:AT2G38290; -.
Araport; AT2G38290; -.
TAIR; locus:2042917; AT2G38290.
eggNOG; KOG0682; Eukaryota.
eggNOG; COG0004; LUCA.
HOGENOM; HOG000017736; -.
InParanoid; Q9M6N7; -.
KO; K03320; -.
OMA; FLYAGMH; -.
OrthoDB; EOG093608RN; -.
PhylomeDB; Q9M6N7; -.
SABIO-RK; Q9M6N7; -.
PRO; PR:Q9M6N7; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; Q9M6N7; baseline and differential.
Genevisible; Q9M6N7; AT.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005886; C:plasma membrane; IDA:TAIR.
GO; GO:0009506; C:plasmodesma; IDA:TAIR.
GO; GO:0015398; F:high-affinity secondary active ammonium transmembrane transporter activity; IDA:TAIR.
GO; GO:0015696; P:ammonium transport; TAS:TAIR.
GO; GO:0009624; P:response to nematode; IEP:TAIR.
Gene3D; 1.10.3430.10; -; 1.
InterPro; IPR029020; Ammonium/urea_transptr.
InterPro; IPR001905; Ammonium_transpt.
InterPro; IPR018047; Ammonium_transpt_CS.
InterPro; IPR024041; NH4_transpt_AmtB-like_dom.
InterPro; IPR002229; RhesusRHD.
Pfam; PF00909; Ammonium_transp; 1.
PRINTS; PR00342; RHESUSRHD.
TIGRFAMs; TIGR00836; amt; 1.
PROSITE; PS01219; AMMONIUM_TRANSP; 1.
1: Evidence at protein level;
Alternative splicing; Ammonia transport; Cell membrane;
Complete proteome; Membrane; Polymorphism; Reference proteome;
Transmembrane; Transmembrane helix; Transport.
CHAIN 1 475 Ammonium transporter 2.
/FTId=PRO_0000139747.
TRANSMEM 27 47 Helical. {ECO:0000255}.
TRANSMEM 55 75 Helical. {ECO:0000255}.
TRANSMEM 120 140 Helical. {ECO:0000255}.
TRANSMEM 148 168 Helical. {ECO:0000255}.
TRANSMEM 183 203 Helical. {ECO:0000255}.
TRANSMEM 218 238 Helical. {ECO:0000255}.
TRANSMEM 254 274 Helical. {ECO:0000255}.
TRANSMEM 279 299 Helical. {ECO:0000255}.
TRANSMEM 302 322 Helical. {ECO:0000255}.
TRANSMEM 336 356 Helical. {ECO:0000255}.
TRANSMEM 389 409 Helical. {ECO:0000255}.
VAR_SEQ 1 116 Missing (in isoform 2).
{ECO:0000303|PubMed:14993207}.
/FTId=VSP_038202.
VARIANT 95 95 D -> N (in strain: cv. C24).
CONFLICT 369 369 P -> L (in Ref. 6; BX819203).
{ECO:0000305}.
SEQUENCE 475 AA; 50768 MW; A4958B0A8D2CAE60 CRC64;
MAGAYDPSLP EVPEWLNKGD NAWQLTAATL VGLQSMPGLV ILYASIVKKK WAVNSAFMAL
YAFAAVLLCW VLLCYKMAFG EELLPFWGKG GPAFDQGYLK GQAKIPNSNV AAPYFPMATL
VYFQFTFAAI TTILVAGSVL GRMNIKAWMA FVPLWLIFSY TVGAYSIWGG GFLYQWGVID
YSGGYVIHLS SGVAGFVAAY WVGPRPKADR ERFPPNNVLL MLAGAGLLWM GWSGFNGGAP
YAANLTSSIA VLNTNLSAAT SLLVWTTLDV IFFGKPSVIG AIQGMVTGLA GVTPGAGLIQ
TWAAIIIGVV SGTAPWASMM IIHKKSALLQ KVDDTLAVFY THAVAGLLGG IMTGLFAHPD
LCVLVLPLPA TRGAFYGGNG GKQLLKQLAG AAFIAVWNVV STTIILLAIR VFIPLRMAEE
ELGIGDDAAH GEEAYALWGD GEKFDATRHV QQFERDQEAA HPSYVHGARG VTIVL


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