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Anaerobic nitric oxide reductase flavorubredoxin (FlRd) (FlavoRb)

 NORV_ECOLI              Reviewed;         479 AA.
Q46877; Q2MAB9; Q46708; Q46709;
02-MAY-2002, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
05-JUL-2017, entry version 154.
RecName: Full=Anaerobic nitric oxide reductase flavorubredoxin;
Short=FlRd;
Short=FlavoRb;
Name=norV; Synonyms=flrD, ygaI, ygaJ, ygaK;
OrderedLocusNames=b2710, JW2680;
Escherichia coli (strain K12).
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
NCBI_TaxID=83333;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=K12;
Yano K., Ikebukuro K., Takada Y., Tomiyama M., Karube I.;
"Sequencing and characterization of the downstream region of hydA in
Escherichia coli.";
Submitted (FEB-1994) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
PubMed=9278503; DOI=10.1126/science.277.5331.1453;
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J.,
Mau B., Shao Y.;
"The complete genome sequence of Escherichia coli K-12.";
Science 277:1453-1462(1997).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
PubMed=16738553; DOI=10.1038/msb4100049;
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
"Highly accurate genome sequences of Escherichia coli K-12 strains
MG1655 and W3110.";
Mol. Syst. Biol. 2:E1-E5(2006).
[4]
CHARACTERIZATION.
PubMed=9660187; DOI=10.1046/j.1432-1327.1998.2540325.x;
Wasserfallen A., Ragettli S., Jouanneau Y., Leisinger T.;
"A family of flavoproteins in the domains Archaea and Bacteria.";
Eur. J. Biochem. 254:325-332(1998).
[5]
PROTEIN SEQUENCE OF N-TERMINUS, CHARACTERIZATION, AND MUTAGENESIS.
PubMed=11123953; DOI=10.1021/bi001844y;
Gomes C.M., Vicente J.B., Wasserfallen A., Teixeira M.;
"Spectroscopic studies and characterization of a novel electron-
transfer chain from Escherichia coli involving a flavorubredoxin and
its flavoprotein reductase partner.";
Biochemistry 39:16230-16237(2000).
[6]
IDENTIFICATION OF FUNCTION.
STRAIN=K12 / AB1157;
PubMed=11751865; DOI=10.1074/jbc.M110471200;
Gardner A.M., Helmick R.A., Gardner P.R.;
"Flavorubredoxin, an inducible catalyst for nitric oxide reduction and
detoxification in Escherichia coli.";
J. Biol. Chem. 277:8172-8177(2002).
[7]
IDENTIFICATION OF FUNCTION.
PubMed=12101220; DOI=10.1074/jbc.M203886200;
Gomes C.M., Giuffre A., Forte E., Vicente J.B., Saraiva L.M.,
Brunori M., Teixeira M.;
"A novel type of nitric-oxide reductase. Escherichia coli
flavorubredoxin.";
J. Biol. Chem. 277:25273-25276(2002).
[8]
REGULATION OF EXPRESSION; NEGATIVE REGULATION BY FNR.
STRAIN=K12;
PubMed=12586421; DOI=10.1016/S0378-1097(02)01186-2;
da Costa P.N., Teixeira M., Saraiva L.M.;
"Regulation of the flavorubredoxin nitric oxide reductase gene in
Escherichia coli: nitrate repression, nitrite induction, and possible
post-transcription control.";
FEMS Microbiol. Lett. 218:385-393(2003).
[9]
REGULATION OF EXPRESSION; ANAEROBIC AND NO INDUCED EXPRESSION, AND
REQUIREMENT FOR SIGMA-54.
STRAIN=K12 / AB1157;
PubMed=12529359; DOI=10.1074/jbc.M212462200;
Gardner A.M., Gessner C.R., Gardner P.R.;
"Regulation of the nitric oxide reduction operon (norRVW) in
Escherichia coli: role of NorR and sigma 54 in the nitric oxide stress
response.";
J. Biol. Chem. 278:10081-10086(2003).
-!- FUNCTION: Anaerobic nitric oxide reductase; uses NADH to detoxify
nitric oxide (NO), protecting several 4Fe-4S NO-sensitive enzymes.
Has at least 2 reductase partners, only one of which (NorW,
flavorubredoxin reductase) has been identified. NO probably binds
to the di-iron center; electrons enter from the reductase at
rubredoxin and are transferred sequentially to the FMN center and
the di-iron center. Also able to function as an aerobic oxygen
reductase.
-!- COFACTOR:
Name=Fe cation; Xref=ChEBI:CHEBI:24875;
Note=Binds 3 Fe cations per monomer.;
-!- COFACTOR:
Name=FMN; Xref=ChEBI:CHEBI:58210;
Note=Binds 1 FMN per monomer.;
-!- PATHWAY: Nitrogen metabolism; nitric oxide reduction.
-!- SUBUNIT: Homotetramer.
-!- SUBCELLULAR LOCATION: Cytoplasm.
-!- INDUCTION: Submicromolar concentrations of NO induce NorV-
dependent NO consumption; as NO reductase is sensitive to oxygen,
no activity is detected in its presence. Repressed by oxygen in
the presence of NO. Different effects on anaerobic induction in
the absence of NO, and in the presence of N(O)3- or N(O)2- have
been reported. Transcription is negatively regulated by FNR and
does not require NarL or NarP.
-!- SIMILARITY: In the N-terminal section; belongs to the zinc
metallo-hydrolase group 3 family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=BAA05933.1; Type=Frameshift; Positions=134, 411; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; D28595; BAA05932.1; ALT_FRAME; Genomic_DNA.
EMBL; D28595; BAA05933.1; ALT_FRAME; Genomic_DNA.
EMBL; U29579; AAA69220.1; -; Genomic_DNA.
EMBL; U00096; AAC75752.1; -; Genomic_DNA.
EMBL; AP009048; BAE76787.1; -; Genomic_DNA.
PIR; B65051; B65051.
RefSeq; NP_417190.1; NC_000913.3.
RefSeq; WP_000029634.1; NZ_LN832404.1.
PDB; 2MS3; NMR; -; A=423-479.
PDB; 4D02; X-ray; 1.76 A; A=1-479.
PDB; 5LLD; X-ray; 2.65 A; A=1-479.
PDB; 5LMC; X-ray; 1.90 A; A=1-479.
PDBsum; 2MS3; -.
PDBsum; 4D02; -.
PDBsum; 5LLD; -.
PDBsum; 5LMC; -.
ProteinModelPortal; Q46877; -.
SMR; Q46877; -.
DIP; DIP-28070N; -.
IntAct; Q46877; 10.
STRING; 316385.ECDH10B_2878; -.
PaxDb; Q46877; -.
PRIDE; Q46877; -.
EnsemblBacteria; AAC75752; AAC75752; b2710.
EnsemblBacteria; BAE76787; BAE76787; BAE76787.
GeneID; 948979; -.
KEGG; ecj:JW2680; -.
KEGG; eco:b2710; -.
PATRIC; fig|1411691.4.peg.4032; -.
EchoBASE; EB2793; -.
EcoGene; EG12963; norV.
eggNOG; ENOG4108ESE; Bacteria.
eggNOG; COG0426; LUCA.
eggNOG; COG1773; LUCA.
HOGENOM; HOG000224529; -.
InParanoid; Q46877; -.
KO; K12264; -.
PhylomeDB; Q46877; -.
BioCyc; EcoCyc:G7413-MONOMER; -.
BioCyc; MetaCyc:G7413-MONOMER; -.
UniPathway; UPA00638; -.
PRO; PR:Q46877; -.
Proteomes; UP000000318; Chromosome.
Proteomes; UP000000625; Chromosome.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0009055; F:electron carrier activity; IDA:EcoCyc.
GO; GO:0010181; F:FMN binding; IDA:EcoCyc.
GO; GO:0042802; F:identical protein binding; IDA:EcoCyc.
GO; GO:0005506; F:iron ion binding; IDA:EcoCyc.
GO; GO:0016966; F:nitric oxide reductase activity; IEA:InterPro.
GO; GO:0016661; F:oxidoreductase activity, acting on other nitrogenous compounds as donors; IDA:EcoCyc.
GO; GO:0046210; P:nitric oxide catabolic process; IMP:EcoCyc.
GO; GO:0051289; P:protein homotetramerization; IDA:EcoCyc.
GO; GO:0071731; P:response to nitric oxide; IEP:EcoCyc.
CDD; cd00730; rubredoxin; 1.
Gene3D; 3.40.50.360; -; 1.
Gene3D; 3.60.15.10; -; 1.
HAMAP; MF_01312; NorV; 1.
InterPro; IPR023957; Anaer_NO_rdtase_flvorubredoxin.
InterPro; IPR008254; Flavodoxin/NO_synth.
InterPro; IPR029039; Flavoprotein-like_dom.
InterPro; IPR001279; Metallo-B-lactamas.
InterPro; IPR024934; Rubredoxin-like_dom.
InterPro; IPR016440; Rubredoxin-O_OxRdtase.
InterPro; IPR024935; Rubredoxin_dom.
Pfam; PF00258; Flavodoxin_1; 1.
Pfam; PF00753; Lactamase_B; 1.
Pfam; PF00301; Rubredoxin; 1.
PIRSF; PIRSF005243; ROO; 1.
PRINTS; PR00163; RUBREDOXIN.
SMART; SM00849; Lactamase_B; 1.
SUPFAM; SSF52218; SSF52218; 1.
SUPFAM; SSF56281; SSF56281; 1.
PROSITE; PS50902; FLAVODOXIN_LIKE; 1.
PROSITE; PS50903; RUBREDOXIN_LIKE; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Cytoplasm; Direct protein sequencing;
Electron transport; Flavoprotein; FMN; Iron; Metal-binding;
Oxidoreductase; Reference proteome; Transport.
CHAIN 1 479 Anaerobic nitric oxide reductase
flavorubredoxin.
/FTId=PRO_0000216785.
DOMAIN 254 393 Flavodoxin-like.
DOMAIN 423 474 Rubredoxin-like.
NP_BIND 260 264 FMN. {ECO:0000250}.
NP_BIND 342 369 FMN. {ECO:0000250}.
REGION 30 210 Zinc metallo-hydrolase.
METAL 79 79 Iron 1. {ECO:0000250}.
METAL 81 81 Iron 1. {ECO:0000250}.
METAL 83 83 Iron 2. {ECO:0000250}.
METAL 147 147 Iron 1. {ECO:0000250}.
METAL 166 166 Iron 1. {ECO:0000250}.
METAL 166 166 Iron 2. {ECO:0000250}.
METAL 227 227 Iron 2. {ECO:0000250}.
METAL 428 428 Iron 3. {ECO:0000250}.
METAL 431 431 Iron 3. {ECO:0000250}.
METAL 461 461 Iron 3. {ECO:0000250}.
METAL 464 464 Iron 3. {ECO:0000250}.
MUTAGEN 413 479 Missing: Unable to accept electrons from
nitric oxide reductase FlrD-NAD(+)
reductase (norW).
{ECO:0000269|PubMed:11123953}.
STRAND 3 6 {ECO:0000244|PDB:4D02}.
STRAND 9 11 {ECO:0000244|PDB:4D02}.
STRAND 14 18 {ECO:0000244|PDB:4D02}.
TURN 23 26 {ECO:0000244|PDB:4D02}.
STRAND 33 35 {ECO:0000244|PDB:4D02}.
STRAND 38 48 {ECO:0000244|PDB:4D02}.
HELIX 53 55 {ECO:0000244|PDB:4D02}.
HELIX 56 66 {ECO:0000244|PDB:4D02}.
HELIX 69 71 {ECO:0000244|PDB:4D02}.
STRAND 74 76 {ECO:0000244|PDB:4D02}.
TURN 82 84 {ECO:0000244|PDB:4D02}.
HELIX 88 94 {ECO:0000244|PDB:4D02}.
STRAND 100 102 {ECO:0000244|PDB:4D02}.
HELIX 104 114 {ECO:0000244|PDB:4D02}.
STRAND 121 123 {ECO:0000244|PDB:4D02}.
STRAND 129 133 {ECO:0000244|PDB:4D02}.
STRAND 136 142 {ECO:0000244|PDB:4D02}.
STRAND 146 148 {ECO:0000244|PDB:4D02}.
STRAND 152 156 {ECO:0000244|PDB:4D02}.
TURN 157 160 {ECO:0000244|PDB:4D02}.
STRAND 161 165 {ECO:0000244|PDB:4D02}.
TURN 166 168 {ECO:0000244|PDB:4D02}.
HELIX 179 181 {ECO:0000244|PDB:4D02}.
HELIX 184 198 {ECO:0000244|PDB:4D02}.
HELIX 200 202 {ECO:0000244|PDB:4D02}.
HELIX 203 214 {ECO:0000244|PDB:4D02}.
TURN 215 217 {ECO:0000244|PDB:5LMC}.
STRAND 221 228 {ECO:0000244|PDB:4D02}.
HELIX 236 246 {ECO:0000244|PDB:4D02}.
STRAND 251 258 {ECO:0000244|PDB:4D02}.
STRAND 261 263 {ECO:0000244|PDB:4D02}.
HELIX 264 279 {ECO:0000244|PDB:4D02}.
STRAND 284 289 {ECO:0000244|PDB:4D02}.
HELIX 290 292 {ECO:0000244|PDB:4D02}.
HELIX 295 304 {ECO:0000244|PDB:4D02}.
STRAND 305 311 {ECO:0000244|PDB:4D02}.
HELIX 321 333 {ECO:0000244|PDB:4D02}.
STRAND 339 349 {ECO:0000244|PDB:4D02}.
HELIX 352 362 {ECO:0000244|PDB:4D02}.
STRAND 371 376 {ECO:0000244|PDB:4D02}.
HELIX 379 396 {ECO:0000244|PDB:4D02}.
STRAND 426 428 {ECO:0000244|PDB:2MS3}.
TURN 429 431 {ECO:0000244|PDB:2MS3}.
TURN 437 439 {ECO:0000244|PDB:2MS3}.
HELIX 442 444 {ECO:0000244|PDB:2MS3}.
TURN 452 454 {ECO:0000244|PDB:2MS3}.
TURN 462 464 {ECO:0000244|PDB:2MS3}.
STRAND 468 471 {ECO:0000244|PDB:2MS3}.
SEQUENCE 479 AA; 54234 MW; 17AC889A6924AB41 CRC64;
MSIVVKNNIH WVGQRDWEVR DFHGTEYKTL RGSSYNSYLI REEKNVLIDT VDHKFSREFV
QNLRNEIDLA DIDYIVINHA EEDHAGALTE LMAQIPDTPI YCTANAIDSI NGHHHHPEWN
FNVVKTGDTL DIGNGKQLIF VETPMLHWPD SMMTYLTGDA VLFSNDAFGQ HYCDEHLFND
EVDQTELFEQ CQRYYANILT PFSRLVTPKI TEILGFNLPV DMIATSHGVV WRDNPTQIVE
LYLKWAADYQ EDRITIFYDT MSNNTRMMAD AIAQGIAETD PRVAVKIFNV ARSDKNEILT
NVFRSKGVLV GTSTMNNVMM PKIAGLVEEM TGLRFRNKRA SAFGSHGWSG GAVDRLSTRL
QDAGFEMSLS LKAKWRPDQD ALKLCREHGR EIARQWALAP LPQSTVNTVV KEETSATTTA
DLGPRMQCSV CQWIYDPAKG EPMQDVAPGT PWSEVPDNFL CPECSLGKDV FEELASEAK


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