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Ankyrin repeat and LEM domain-containing protein 1 (EC 3.1.-.-) (Ankyrin repeat domain-containing protein 41) (LEM-domain containing protein 3)

 ANKL1_HUMAN             Reviewed;         615 AA.
Q8NAG6; A8VU82; Q8N8J8;
27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
05-OCT-2010, sequence version 2.
12-SEP-2018, entry version 111.
RecName: Full=Ankyrin repeat and LEM domain-containing protein 1;
EC=3.1.-.- {ECO:0000269|PubMed:22399800};
AltName: Full=Ankyrin repeat domain-containing protein 41;
AltName: Full=LEM-domain containing protein 3;
Name=ANKLE1; Synonyms=ANKRD41, LEM3;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND VARIANTS THR-31; VAL-71; GLN-94;
TRP-184; PRO-311 AND ARG-435.
Brachner A., Foisner R., Gotzmann J.;
"LEM3 is a novel LEM-domain containing protein.";
Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE
SEQUENCE [LARGE SCALE MRNA] OF 253-615 (ISOFORM 1), AND VARIANTS
VAL-71; PRO-311 AND ARG-435.
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15057824; DOI=10.1038/nature02399;
Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J.,
Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M.,
Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E.,
Caenepeel S., Carrano A.V., Caoile C., Chan Y.M., Christensen M.,
Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C.,
Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M.,
Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T.,
Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H.,
Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S.,
Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J.,
Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M.,
Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J.,
Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D.,
Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A.,
Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I.,
Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E.,
Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M.,
Rubin E.M., Lucas S.M.;
"The DNA sequence and biology of human chromosome 19.";
Nature 428:529-535(2004).
[4]
FUNCTION, CATALYTIC ACTIVITY, INTERACTION WITH BANF1, SUBCELLULAR
LOCATION, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, DOMAIN, AND
MUTAGENESIS OF TYR-453; GLY-488 AND GLU-551.
PubMed=22399800; DOI=10.1242/jcs.098392;
Brachner A., Braun J., Ghodgaonkar M., Castor D., Zlopasa L.,
Ehrlich V., Jiricny J., Gotzmann J., Knasmueller S., Foisner R.;
"The endonuclease Ankle1 requires its LEM and GIY-YIG motifs for DNA
cleavage in vivo.";
J. Cell Sci. 125:1048-1057(2012).
[5]
FUNCTION, SUBCELLULAR LOCATION, NUCLEAR EXPORT SIGNAL, NUCLEAR
LOCALIZATION SIGNAL, AND MUTAGENESIS OF 110-LEU--LEU-117;
271-LEU--LEU-280 AND 486-TYR--GLY-488.
PubMed=27245214; DOI=10.1186/s12860-016-0102-z;
Zlopasa L., Brachner A., Foisner R.;
"Nucleo-cytoplasmic shuttling of the endonuclease ankyrin repeats and
LEM domain-containing protein 1 (Ankle1) is mediated by canonical
nuclear export- and nuclear import signals.";
BMC Cell Biol. 17:23-23(2016).
-!- FUNCTION: Endonuclease that probably plays a role in the DNA
damage response and DNA repair. {ECO:0000269|PubMed:22399800,
ECO:0000269|PubMed:27245214}.
-!- SUBUNIT: Interacts (via LEM domain) with BANF1; the interaction
may favor BANF1 dimerization. {ECO:0000269|PubMed:22399800}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:22399800,
ECO:0000269|PubMed:27245214}. Nucleus
{ECO:0000269|PubMed:22399800, ECO:0000269|PubMed:27245214}.
Note=At the steady state, localizes predominantly in the
cytoplasm. {ECO:0000269|PubMed:22399800,
ECO:0000269|PubMed:27245214}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q8NAG6-2; Sequence=Displayed;
Note=No experimental confirmation available.;
Name=2;
IsoId=Q8NAG6-1; Sequence=VSP_039879, VSP_039880;
-!- TISSUE SPECIFICITY: Expression is predominant in adult bone
marrow. {ECO:0000269|PubMed:22399800}.
-!- DEVELOPMENTAL STAGE: Expressed in fetal spleen, liver and thymus.
{ECO:0000269|PubMed:22399800}.
-!- DOMAIN: The LEM domain is required for GIY-YIG domain-mediated DNA
cleavage and induction of DNA damage response.
{ECO:0000269|PubMed:22399800}.
-!- SEQUENCE CAUTION:
Sequence=BAC04840.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; EU184013; ABW73565.1; -; mRNA.
EMBL; AK092706; BAC03953.1; -; mRNA.
EMBL; AK096688; BAC04840.1; ALT_INIT; mRNA.
EMBL; AC010463; -; NOT_ANNOTATED_CDS; Genomic_DNA.
RefSeq; NP_001265372.1; NM_001278443.1.
RefSeq; NP_001265374.1; NM_001278445.1.
RefSeq; NP_689576.5; NM_152363.5.
UniGene; Hs.721610; -.
ProteinModelPortal; Q8NAG6; -.
SMR; Q8NAG6; -.
STRING; 9606.ENSP00000377971; -.
iPTMnet; Q8NAG6; -.
PhosphoSitePlus; Q8NAG6; -.
DMDM; 308153409; -.
PaxDb; Q8NAG6; -.
PeptideAtlas; Q8NAG6; -.
PRIDE; Q8NAG6; -.
ProteomicsDB; 72677; -.
ProteomicsDB; 72678; -. [Q8NAG6-1]
Ensembl; ENST00000394458; ENSP00000377971; ENSG00000160117.
GeneID; 126549; -.
KEGG; hsa:126549; -.
UCSC; uc002nga.3; human. [Q8NAG6-2]
CTD; 126549; -.
DisGeNET; 126549; -.
EuPathDB; HostDB:ENSG00000160117.14; -.
GeneCards; ANKLE1; -.
HGNC; HGNC:26812; ANKLE1.
HPA; HPA026789; -.
HPA; HPA073498; -.
neXtProt; NX_Q8NAG6; -.
PharmGKB; PA162376509; -.
eggNOG; ENOG410IEED; Eukaryota.
eggNOG; ENOG41104HP; LUCA.
HOGENOM; HOG000015588; -.
HOVERGEN; HBG079451; -.
InParanoid; Q8NAG6; -.
KO; K21411; -.
OrthoDB; EOG091G059E; -.
PhylomeDB; Q8NAG6; -.
TreeFam; TF319333; -.
GenomeRNAi; 126549; -.
PRO; PR:Q8NAG6; -.
Proteomes; UP000005640; Chromosome 19.
Bgee; ENSG00000160117; Expressed in 94 organ(s), highest expression level in cerebellum.
ExpressionAtlas; Q8NAG6; baseline and differential.
Genevisible; Q8NAG6; HS.
GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO; GO:0005639; C:integral component of nuclear inner membrane; IBA:GO_Central.
GO; GO:0031490; F:chromatin DNA binding; IBA:GO_Central.
GO; GO:0004519; F:endonuclease activity; IDA:UniProtKB.
GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
GO; GO:0070197; P:meiotic attachment of telomere to nuclear envelope; IBA:GO_Central.
GO; GO:0006998; P:nuclear envelope organization; IBA:GO_Central.
GO; GO:0090305; P:nucleic acid phosphodiester bond hydrolysis; IC:UniProtKB.
GO; GO:2001022; P:positive regulation of response to DNA damage stimulus; IDA:UniProtKB.
GO; GO:0006611; P:protein export from nucleus; IDA:UniProtKB.
CDD; cd00204; ANK; 1.
Gene3D; 1.10.720.40; -; 1.
Gene3D; 1.25.40.20; -; 1.
InterPro; IPR034998; ANKLE1.
InterPro; IPR002110; Ankyrin_rpt.
InterPro; IPR020683; Ankyrin_rpt-contain_dom.
InterPro; IPR036770; Ankyrin_rpt-contain_sf.
InterPro; IPR000305; GIY-YIG_endonuc.
InterPro; IPR011015; LEM/LEM-like_dom_sf.
InterPro; IPR003887; LEM_dom.
PANTHER; PTHR13428:SF11; PTHR13428:SF11; 1.
Pfam; PF12796; Ank_2; 1.
Pfam; PF03020; LEM; 1.
SMART; SM00248; ANK; 3.
SUPFAM; SSF48403; SSF48403; 1.
SUPFAM; SSF63451; SSF63451; 1.
PROSITE; PS50297; ANK_REP_REGION; 1.
PROSITE; PS50088; ANK_REPEAT; 2.
PROSITE; PS50164; GIY_YIG; 1.
PROSITE; PS50954; LEM; 1.
1: Evidence at protein level;
Alternative splicing; ANK repeat; Complete proteome; Cytoplasm;
DNA damage; DNA repair; Endonuclease; Hydrolase; Nuclease; Nucleus;
Polymorphism; Reference proteome; Repeat.
CHAIN 1 615 Ankyrin repeat and LEM domain-containing
protein 1.
/FTId=PRO_0000244370.
REPEAT 39 71 ANK 1.
REPEAT 75 104 ANK 2.
REPEAT 108 137 ANK 3.
DOMAIN 355 399 LEM. {ECO:0000255|PROSITE-
ProRule:PRU00313}.
DOMAIN 448 566 GIY-YIG. {ECO:0000255|PROSITE-
ProRule:PRU00977}.
MOTIF 271 280 Nuclear export signal.
{ECO:0000269|PubMed:27245214}.
MOTIF 579 586 Nuclear localization signal.
{ECO:0000269|PubMed:27245214}.
COMPBIAS 582 585 Poly-Arg.
VAR_SEQ 1 22 MCSEARLARRLRDALREEEPWA -> MRCGRRSR (in
isoform 2).
{ECO:0000303|PubMed:14702039}.
/FTId=VSP_039879.
VAR_SEQ 374 399 Missing (in isoform 2).
{ECO:0000303|PubMed:14702039}.
/FTId=VSP_039880.
VARIANT 31 31 A -> T (in dbSNP:rs8100241).
{ECO:0000269|Ref.1}.
/FTId=VAR_063681.
VARIANT 71 71 A -> V (in dbSNP:rs1864116).
{ECO:0000269|PubMed:14702039,
ECO:0000269|Ref.1}.
/FTId=VAR_063682.
VARIANT 94 94 L -> Q (in dbSNP:rs8108174).
{ECO:0000269|Ref.1}.
/FTId=VAR_033507.
VARIANT 160 160 P -> S (in dbSNP:rs59119993).
/FTId=VAR_061015.
VARIANT 184 184 L -> W (in dbSNP:rs2363956).
{ECO:0000269|Ref.1}.
/FTId=VAR_033508.
VARIANT 311 311 T -> P (in dbSNP:rs891017).
{ECO:0000269|PubMed:14702039,
ECO:0000269|Ref.1}.
/FTId=VAR_033509.
VARIANT 435 435 Q -> R (in dbSNP:rs11086065).
{ECO:0000269|PubMed:14702039,
ECO:0000269|Ref.1}.
/FTId=VAR_033510.
VARIANT 447 447 V -> M (in dbSNP:rs34112069).
/FTId=VAR_033511.
MUTAGEN 110 117 LRPLDLAL->ARPADAAA: Slight increase in
nuclear localization.
{ECO:0000269|PubMed:27245214}.
MUTAGEN 271 280 LNARLQALTL->ANARAQAATA: Increased nuclear
localization.
{ECO:0000269|PubMed:27245214}.
MUTAGEN 453 453 Y->A: Loss of endonucleolytic activity.
{ECO:0000269|PubMed:22399800}.
MUTAGEN 486 488 YVG->AAA: Probable loss of
endonucleolytic activity. Fails to induce
DNA damage response upon leptomycin-
mediated nuclear localization. No nuclear
translocation upon treatment with DNA
damaging agents. Steady state cytoplasmic
localization is not affected.
{ECO:0000269|PubMed:27245214}.
MUTAGEN 488 488 G->A: Loss of endonucleolytic activity.
{ECO:0000269|PubMed:22399800}.
MUTAGEN 551 551 E->A: Loss of endonucleolytic activity.
{ECO:0000269|PubMed:22399800}.
CONFLICT 444 444 E -> G (in Ref. 2; BAC03953).
{ECO:0000305}.
SEQUENCE 615 AA; 66890 MW; 5889866143933668 CRC64;
MCSEARLARR LRDALREEEP WAVEELLRCG ADPNLVLEDG AAAVHLAAGA RHPRGLRCLG
ALLRQGGDPN ARSVEALTPL HVAAAWGCRR GLELLLSQGA DPALRDQDGL RPLDLALQQG
HLECARVLQD LDTRTRTRTR IGAETQEPEP APGTPGLSGP TDETLDSIAL QKQPCRGDNR
DIGLEADPGP PSLPVPLETV DKHGSSASPP GHWDYSSDAS FVTAVEVSGA EDPASDTPPW
AGSLPPTRQG LLHVVHANQR VPRSQGTEAE LNARLQALTL TPPNAAGFQS SPSSMPLLDR
SPAHSPPRTP TPGASDCHCL WEHQTSIDSD MATLWLTEDE ASSTGGREPV GPCRHLPVST
VSDLELLKGL RALGENPHPI TPFTRQLYHQ QLEEAQIAPG PEFSGHSLEL AAALRTGCIP
DVQADEDALA QQFEQPDPAR RWREGVVKSS FTYLLLDPRE TQDLPARAFS LTPAERLQTF
IRAIFYVGKG TRARPYVHLW EALGHHGRSR KQPHQACPKV RQILDIWASG CGVVSLHCFQ
HVVAVEAYTR EACIVEALGI QTLTNQKQGH CYGVVAGWPP ARRRRLGVHL LHRALLVFLA
EGERQLHPQD IQARG


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