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At5g62470 (MYB96 transcription factor-like protein) (Myb domain protein 96)

 Q24JK1_ARATH            Unreviewed;       352 AA.
Q24JK1;
18-APR-2006, integrated into UniProtKB/TrEMBL.
18-APR-2006, sequence version 1.
25-OCT-2017, entry version 111.
SubName: Full=At5g62470 {ECO:0000313|EMBL:ABD85159.1};
SubName: Full=MYB96 transcription factor-like protein {ECO:0000313|EMBL:BAF00865.1};
SubName: Full=Myb domain protein 96 {ECO:0000313|EMBL:AED97611.1};
Name=MYB96 {ECO:0000313|EMBL:AED97611.1};
Synonyms=ATMYB96 {ECO:0000313|EMBL:AED97611.1},
MYB DOMAIN PROTEIN 96 {ECO:0000313|EMBL:AED97611.1},
myb domain protein 96 {ECO:0000313|EMBL:AED97611.1},
MYBCOV1 {ECO:0000313|EMBL:AED97611.1};
OrderedLocusNames=At5g62470 {ECO:0000313|Araport:AT5G62470,
ECO:0000313|EMBL:AED97611.1};
ORFNames=K19B1.8 {ECO:0000313|EMBL:AED97611.1},
K19B1_8 {ECO:0000313|EMBL:AED97611.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702 {ECO:0000313|EMBL:ABD85159.1};
[1] {ECO:0000313|EMBL:AED97611.1, ECO:0000313|Proteomes:UP000006548}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
PubMed=11130714; DOI=10.1038/35048507;
Kazusa DNA Research Institute;
Cold Spring Harbor and Washington University in St Louis Sequencing Consortium;
European Union Arabidopsis Genome Sequencing Consortium;
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
Parnell L., Shah R., Rodriguez M., See L.H., Vil D., Baker J.,
Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.,
Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
Volckaert G., Wambutt R., Dusterhoft A., Stiekema W., Pohl T.,
Entian K.D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.A.,
McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Lankhorst R.K., Weitzenegger T., Bothe G., Rose M.,
Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
Mayer K., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.W.,
Bevan M., Fransz P.;
"Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana.";
Nature 408:823-826(2000).
[2] {ECO:0000313|EMBL:ABD85159.1}
NUCLEOTIDE SEQUENCE.
Shinn P., Chen H., Kim C.J., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|EMBL:BAF00865.1}
NUCLEOTIDE SEQUENCE.
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|EMBL:AED97611.1}
NUCLEOTIDE SEQUENCE.
TAIR;
Swarbreck D., Lamesch P., Wilks C., Huala E.;
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
[5] {ECO:0000313|EMBL:AED97611.1, ECO:0000313|Proteomes:UP000006548}
GENOME REANNOTATION.
STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
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EMBL; BT024888; ABD85159.1; -; mRNA.
EMBL; CP002688; AED97611.1; -; Genomic_DNA.
EMBL; AK228977; BAF00865.1; -; mRNA.
RefSeq; NP_201053.2; NM_125641.4.
UniGene; At.9303; -.
STRING; 3702.AT5G62470.2; -.
EnsemblPlants; AT5G62470.2; AT5G62470.2; AT5G62470.
GeneID; 836367; -.
Gramene; AT5G62470.2; AT5G62470.2; AT5G62470.
KEGG; ath:AT5G62470; -.
Araport; AT5G62470; -.
TAIR; locus:2154119; AT5G62470.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
HOGENOM; HOG000237600; -.
KO; K09422; -.
OMA; DEQSHEM; -.
OrthoDB; EOG09360KVW; -.
Proteomes; UP000006548; Chromosome 5.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0001135; F:transcription factor activity, RNA polymerase II transcription factor recruiting; IBA:GO_Central.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0010468; P:regulation of gene expression; IMP:TAIR.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IBA:GO_Central.
GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
GO; GO:0009751; P:response to salicylic acid; IEP:TAIR.
GO; GO:0009651; P:response to salt stress; IEP:TAIR.
GO; GO:0009414; P:response to water deprivation; IMP:TAIR.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
Pfam; PF00249; Myb_DNA-binding; 2.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000006548};
Reference proteome {ECO:0000313|Proteomes:UP000006548}.
DOMAIN 9 65 HTH myb-type.
{ECO:0000259|PROSITE:PS51294}.
DOMAIN 66 116 HTH myb-type.
{ECO:0000259|PROSITE:PS51294}.
SEQUENCE 352 AA; 39188 MW; 3554956483EEDFEE CRC64;
MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY
LRPGIKRGNF TEHEEKTIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKIN
ESGEEDNDGV SSSNTSSQKN HQSTNKGQWE RRLQTDINMA KQALCEALSL DKPSSTLSSS
SSLPTPVITQ QNIRNFSSAL LDRCYDPSSS SSSTTTTTTS NTTNPYPSGV YASSAENIAR
LLQDFMKDTP KALTLSSSSP VSETGPLTAA VSEEGGEGFE QSFFSFNSMD ETQNLTQETS
FFHDQVIKPE ITMDQDHGLI SQGSLSLFEK WLFDEQSHEM VGMALAGQEG MF


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