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At5g62470 (MYB96 transcription factor-like protein) (Myb domain protein 96)

 MYB96_ARATH             Reviewed;         352 AA.
Q24JK1; Q6R036; Q9SPG0; Q9ZRY6;
31-JAN-2018, integrated into UniProtKB/Swiss-Prot.
18-APR-2006, sequence version 1.
10-OCT-2018, entry version 120.
RecName: Full=Transcription factor MYB96 {ECO:0000303|PubMed:11597504};
AltName: Full=Myb-related protein 96 {ECO:0000303|PubMed:11597504};
Short=AtMYB96 {ECO:0000303|PubMed:11597504};
Name=MYB96 {ECO:0000303|PubMed:11597504};
Synonyms=MYBCOV1 {ECO:0000312|EMBL:AED97611.1};
OrderedLocusNames=At5g62470 {ECO:0000312|Araport:AT5G62470};
ORFNames=K19B1.8 {ECO:0000312|EMBL:BAB11497.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), GENE FAMILY, AND NOMENCLATURE.
PubMed=11597504; DOI=10.1016/S1369-5266(00)00199-0;
Stracke R., Werber M., Weisshaar B.;
"The R2R3-MYB gene family in Arabidopsis thaliana.";
Curr. Opin. Plant Biol. 4:447-456(2001).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
Qu L., Gu H.;
"The MYB transcription factor family in Arabidopsis: A genome-wide
cloning and expression pattern Analysis.";
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9872454; DOI=10.1093/dnares/5.5.297;
Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VII.
Sequence features of the regions of 1,013,767 bp covered by sixteen
physically assigned P1 and TAC clones.";
DNA Res. 5:297-308(1998).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
Shinn P., Chen H., Kim C.J., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[7]
NUCLEOTIDE SEQUENCE [MRNA] OF 10-352 (ISOFORM 1), AND INDUCTION BY THE
CAULIFLOWER MOSAIC VIRUS.
PubMed=10226370; DOI=10.1094/MPMI.1999.12.5.377;
Geri C.E., Cecchini E., Giannakou M.E., Covey S.N., Milner J.J.;
"Altered patterns of gene expression in Arabidopsis elicited by
cauliflower mosaic virus (CaMV) infection and by a CaMV gene VI
transgene.";
Mol. Plant Microbe Interact. 12:377-384(1999).
[8]
FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INDUCTION, AND
DISRUPTION PHENOTYPE.
PubMed=19625633; DOI=10.1104/pp.109.144220;
Seo P.J., Xiang F., Qiao M., Park J.Y., Lee Y.N., Kim S.G., Lee Y.H.,
Park W.J., Park C.M.;
"The MYB96 transcription factor mediates abscisic acid signaling
during drought stress response in Arabidopsis.";
Plant Physiol. 151:275-289(2009).
[9]
FUNCTION.
PubMed=20149112; DOI=10.1111/j.1469-8137.2010.03183.x;
Seo P.J., Park C.M.;
"MYB96-mediated abscisic acid signals induce pathogen resistance
response by promoting salicylic acid biosynthesis in Arabidopsis.";
New Phytol. 186:471-483(2010).
[10]
FUNCTION.
PubMed=21398568; DOI=10.1105/tpc.111.083485;
Seo P.J., Lee S.B., Suh M.C., Park M.J., Go Y.S., Park C.M.;
"The MYB96 transcription factor regulates cuticular wax biosynthesis
under drought conditions in Arabidopsis.";
Plant Cell 23:1138-1152(2011).
[11]
FUNCTION.
PubMed=23404903; DOI=10.1093/jxb/ert040;
Guo L., Yang H., Zhang X., Yang S.;
"Lipid transfer protein 3 as a target of MYB96 mediates freezing and
drought stress in Arabidopsis.";
J. Exp. Bot. 64:1755-1767(2013).
[12]
FUNCTION, AND INDUCTION.
PubMed=25912720; DOI=10.1111/tpj.12866;
Lee H.G., Seo P.J.;
"The MYB96-HHP module integrates cold and abscisic acid signaling to
activate the CBF-COR pathway in Arabidopsis.";
Plant J. 82:962-977(2015).
[13]
FUNCTION.
PubMed=25616734; DOI=10.1007/s11103-015-0283-4;
Lee H.G., Lee K., Seo P.J.;
"The Arabidopsis MYB96 transcription factor plays a role in seed
dormancy.";
Plant Mol. Biol. 87:371-381(2015).
[14]
FUNCTION.
PubMed=25869652; DOI=10.1104/pp.15.00162;
Lee K., Lee H.G., Yoon S., Kim H.U., Seo P.J.;
"The Arabidopsis MYB96 transcription factor is a positive regulator of
ABSCISIC ACID-INSENSITIVE4 in the control of seed germination.";
Plant Physiol. 168:677-689(2015).
[15]
FUNCTION.
PubMed=27577115; DOI=10.1093/pcp/pcw147;
Lee S.B., Kim H.U., Suh M.C.;
"MYB94 and MYB96 additively activate cuticular wax biosynthesis in
Arabidopsis.";
Plant Cell Physiol. 57:2300-2311(2016).
[16]
FUNCTION.
PubMed=26725725; DOI=10.1038/srep17754;
Lee H.G., Mas P., Seo P.J.;
"MYB96 shapes the circadian gating of ABA signaling in Arabidopsis.";
Sci. Rep. 6:17754-17754(2016).
-!- FUNCTION: Transcription activator involved in the activation of
cuticular wax biosynthesis under drought stress. Binds directly to
DNA consensus sequences found in the promoters of genes encoding
very-long-chain fatty acid-condensing enzymes involved in
cuticular wax biosynthesis (PubMed:21398568). Functions together
with MYB94 in the activation of cuticular wax biosynthesis
(PubMed:27577115). Involved in drought stress response through
abscisic acid (ABA) signaling. Mediates ABA signals that enhance
plant resistance to drought by reducing stomatal opening. Mediates
ABA-auxin cross-talk to regulate lateral root growth under drought
stress conditions (PubMed:19625633). Involved in the regulation of
ABA biosynthesis and ABA-dependent seed dormancy state. Binds to
the promoters of NCED2 and NCED6, which are enzymes catalyzing the
first step of ABA biosynthesis (PubMed:25616734). Regulates seed
germination by controlling the expression of ABI4, a repressor of
lipid breakdown during seed germination (PubMed:25869652). Binds
to the promoter of LTP3 and transactivates LTP3 gene in response
to drought stress and freezing (PubMed:23404903). Involved in cold
stress response. Binds directly to the promoters of heptahelical
protein (HHP) genes in response to cold stress. HHPs modulate the
expression of SCRM/ICE1, SCRM2/ICE2 and CAMTA3, which are upstream
regulators of cold-responsive C-repeat-binding factors (CBFs)
(PubMed:25912720). Involved in defense responses against the
bacterial pathogen Pseudomonas syringae. May act as a molecular
link that mediates cross-talks between ABA and salicylate
(PubMed:20149112). Involved in a crosstalk between the circadian
clock and ABA signaling. Binds directly to the promoter of
APRR1/TOC1 to activate its expression (PubMed:26725725).
{ECO:0000269|PubMed:19625633, ECO:0000269|PubMed:20149112,
ECO:0000269|PubMed:21398568, ECO:0000269|PubMed:23404903,
ECO:0000269|PubMed:25616734, ECO:0000269|PubMed:25869652,
ECO:0000269|PubMed:25912720, ECO:0000269|PubMed:26725725,
ECO:0000269|PubMed:27577115}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00625, ECO:0000269|PubMed:19625633}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q24JK1-1; Sequence=Displayed;
Name=2;
IsoId=Q24JK1-2; Sequence=VSP_059283;
Note=No experimental confirmation available. {ECO:0000305};
-!- TISSUE SPECIFICITY: Expressed in leaves, flowers, guard cells and
lateral root primordia. {ECO:0000269|PubMed:19625633}.
-!- INDUCTION: Induced by drought stress, salt stress and abscisic
acid (ABA) (PubMed:19625633). Induced by infection with the
cauliflower mosaic virus (CaMV) (PubMed:10226370). Induced by cold
stress (PubMed:25912720). {ECO:0000269|PubMed:10226370,
ECO:0000269|PubMed:19625633, ECO:0000269|PubMed:25912720}.
-!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
conditions, but mutant plants exhibit increased susceptibility to
drought stress. {ECO:0000269|PubMed:19625633}.
-!- MISCELLANEOUS: Plants overexpressing MYB96 exhibit a dwarf growth,
altered leaf morphology, reduced lateral roots, and enhanced
drought resistance (PubMed:19625633). The gain-of-function mutant
myb96-1D (activation tagging) plants exhibit deposition of
epicuticuar wax crystals on leaf surface (PubMed:21398568). The
gain-of-function mutant myb96-1D (activation tagging) plants
accumulate high levels of anthocyanins and salicylate (SA),
express pathogenesis-related (PR) genes constitutively, and
exhibit enhanced resistance to Pseudomonas syringae infection
(PubMed:20149112). {ECO:0000269|PubMed:19625633,
ECO:0000269|PubMed:20149112, ECO:0000269|PubMed:21398568}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AF176001; AAD53106.1; -; mRNA.
EMBL; AY519645; AAS10115.1; -; mRNA.
EMBL; AB015469; BAB11497.1; -; Genomic_DNA.
EMBL; CP002688; AED97610.1; -; Genomic_DNA.
EMBL; CP002688; AED97611.1; -; Genomic_DNA.
EMBL; BT024888; ABD85159.1; -; mRNA.
EMBL; AK228977; BAF00865.1; -; mRNA.
EMBL; AJ011669; CAA09728.1; -; mRNA.
PIR; T52590; T52590.
RefSeq; NP_201053.2; NM_125641.4. [Q24JK1-1]
RefSeq; NP_851248.1; NM_180917.1. [Q24JK1-2]
UniGene; At.9303; -.
ProteinModelPortal; Q24JK1; -.
SMR; Q24JK1; -.
STRING; 3702.AT5G62470.2; -.
PaxDb; Q24JK1; -.
EnsemblPlants; AT5G62470.1; AT5G62470.1; AT5G62470. [Q24JK1-2]
EnsemblPlants; AT5G62470.2; AT5G62470.2; AT5G62470. [Q24JK1-1]
GeneID; 836367; -.
Gramene; AT5G62470.1; AT5G62470.1; AT5G62470. [Q24JK1-2]
Gramene; AT5G62470.2; AT5G62470.2; AT5G62470. [Q24JK1-1]
KEGG; ath:AT5G62470; -.
Araport; AT5G62470; -.
TAIR; locus:2154119; AT5G62470.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
HOGENOM; HOG000237600; -.
InParanoid; Q24JK1; -.
KO; K09422; -.
OMA; DEQSHEM; -.
OrthoDB; EOG09360KVW; -.
PhylomeDB; Q24JK1; -.
PRO; PR:Q24JK1; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q24JK1; baseline and differential.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0001135; F:RNA polymerase II transcription factor recruiting activity; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:UniProtKB.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:UniProtKB-KW.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:UniProtKB.
GO; GO:1904278; P:positive regulation of wax biosynthetic process; IMP:UniProtKB.
GO; GO:0010115; P:regulation of abscisic acid biosynthetic process; IMP:UniProtKB.
GO; GO:0009787; P:regulation of abscisic acid-activated signaling pathway; IMP:UniProtKB.
GO; GO:0010468; P:regulation of gene expression; IMP:TAIR.
GO; GO:2000033; P:regulation of seed dormancy process; IMP:UniProtKB.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
GO; GO:0009409; P:response to cold; IMP:UniProtKB.
GO; GO:0009751; P:response to salicylic acid; IEP:TAIR.
GO; GO:0009651; P:response to salt stress; IEP:TAIR.
GO; GO:0009414; P:response to water deprivation; IMP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0010025; P:wax biosynthetic process; IMP:CACAO.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
Pfam; PF00249; Myb_DNA-binding; 2.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
2: Evidence at transcript level;
Abscisic acid signaling pathway; Activator; Alternative splicing;
Complete proteome; DNA-binding; Nucleus; Plant defense;
Reference proteome; Repeat; Stress response; Transcription;
Transcription regulation.
CHAIN 1 352 Transcription factor MYB96.
/FTId=PRO_0000442919.
DOMAIN 9 65 HTH myb-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 66 116 HTH myb-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 37 61 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 89 112 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
COMPBIAS 174 213 Ser-rich. {ECO:0000255|PROSITE-
ProRule:PRU00016}.
COMPBIAS 214 223 Thr-rich. {ECO:0000255|PROSITE-
ProRule:PRU00017}.
VAR_SEQ 47 47 Missing (in isoform 2).
/FTId=VSP_059283.
CONFLICT 134 134 N -> S (in Ref. 7; CAA09728).
{ECO:0000305}.
CONFLICT 307 307 I -> V (in Ref. 2; AAS10115).
{ECO:0000305}.
SEQUENCE 352 AA; 39188 MW; 3554956483EEDFEE CRC64;
MGRPPCCEKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTHTGLRRCS KSCRLRWTNY
LRPGIKRGNF TEHEEKTIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKIN
ESGEEDNDGV SSSNTSSQKN HQSTNKGQWE RRLQTDINMA KQALCEALSL DKPSSTLSSS
SSLPTPVITQ QNIRNFSSAL LDRCYDPSSS SSSTTTTTTS NTTNPYPSGV YASSAENIAR
LLQDFMKDTP KALTLSSSSP VSETGPLTAA VSEEGGEGFE QSFFSFNSMD ETQNLTQETS
FFHDQVIKPE ITMDQDHGLI SQGSLSLFEK WLFDEQSHEM VGMALAGQEG MF


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