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Autophagy-related protein 13b (AtAPG13b)

 AT13B_ARATH             Reviewed;         625 AA.
F4J8V5; Q0WQ00; Q9LSA0;
11-NOV-2015, integrated into UniProtKB/Swiss-Prot.
28-JUN-2011, sequence version 1.
25-APR-2018, entry version 45.
RecName: Full=Autophagy-related protein 13b {ECO:0000303|PubMed:12114572};
Short=AtAPG13b {ECO:0000303|PubMed:12114572};
Name=ATG13B {ECO:0000303|PubMed:21984698};
OrderedLocusNames=At3g18770 {ECO:0000312|Araport:AT3G18770};
ORFNames=MVE11.13 {ECO:0000312|EMBL:BAB01803.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10819329; DOI=10.1093/dnares/7.2.131;
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
features of the regions of 4,504,864 bp covered by sixty P1 and TAC
clones.";
DNA Res. 7:131-135(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 65-625.
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[4]
GENE FAMILY, AND NOMENCLATURE.
PubMed=12114572; DOI=10.1104/pp.011024;
Hanaoka H., Noda T., Shirano Y., Kato T., Hayashi H., Shibata D.,
Tabata S., Ohsumi Y.;
"Leaf senescence and starvation-induced chlorosis are accelerated by
the disruption of an Arabidopsis autophagy gene.";
Plant Physiol. 129:1181-1193(2002).
[5]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=21984698; DOI=10.1105/tpc.111.090993;
Suttangkakul A., Li F., Chung T., Vierstra R.D.;
"The ATG1/ATG13 protein kinase complex is both a regulator and a
target of autophagic recycling in Arabidopsis.";
Plant Cell 23:3761-3779(2011).
-!- FUNCTION: Involved in autophagy in a nutritional condition
dependent manner. The ATG1-ATG13 protein kinase complex regulates
downstream events required for autophagosome enclosure and/or
vacuolar delivery. Becomes a target of autophagy under nutrient
starvation (By similarity). Connects autophagy to plant
nutritional status (PubMed:21984698).
{ECO:0000250|UniProtKB:Q9SCK0, ECO:0000269|PubMed:21984698}.
-!- SUBCELLULAR LOCATION: Cytoplasmic vesicle, autophagosome
{ECO:0000250|UniProtKB:Q9SCK0}.
-!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
conditions. The double mutant plants atg13a-1 and atg13b-2, or
atg13a-2 and atg13b-2 are hypersensitive to nitrogen or carbon
starvation and show early senescence.
{ECO:0000269|PubMed:21984698}.
-!- SIMILARITY: Belongs to the ATG13 family. Plant subfamily.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=BAB01803.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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EMBL; AB026654; BAB01803.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002686; AEE76144.1; -; Genomic_DNA.
EMBL; AK228910; BAF00799.1; -; mRNA.
RefSeq; NP_188507.1; NM_112763.5.
UniGene; At.38496; -.
ProteinModelPortal; F4J8V5; -.
STRING; 3702.AT3G18770.1; -.
iPTMnet; F4J8V5; -.
PaxDb; F4J8V5; -.
PRIDE; F4J8V5; -.
EnsemblPlants; AT3G18770.1; AT3G18770.1; AT3G18770.
GeneID; 821408; -.
Gramene; AT3G18770.1; AT3G18770.1; AT3G18770.
KEGG; ath:AT3G18770; -.
Araport; AT3G18770; -.
TAIR; locus:2094024; AT3G18770.
eggNOG; KOG4573; Eukaryota.
eggNOG; ENOG410Y4BP; LUCA.
InParanoid; F4J8V5; -.
KO; K08331; -.
OMA; LYRATYQ; -.
OrthoDB; EOG09360GJN; -.
PRO; PR:F4J8V5; -.
Proteomes; UP000006548; Chromosome 3.
ExpressionAtlas; F4J8V5; baseline and differential.
Genevisible; F4J8V5; AT.
GO; GO:1990316; C:Atg1/ULK1 kinase complex; IEA:InterPro.
GO; GO:0005776; C:autophagosome; IEA:UniProtKB-SubCell.
GO; GO:0031410; C:cytoplasmic vesicle; IEA:UniProtKB-KW.
GO; GO:0006914; P:autophagy; IEA:UniProtKB-KW.
GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
InterPro; IPR018731; Atg13.
Pfam; PF10033; ATG13; 1.
2: Evidence at transcript level;
Autophagy; Complete proteome; Cytoplasmic vesicle; Protein transport;
Reference proteome; Transport.
CHAIN 1 625 Autophagy-related protein 13b.
/FTId=PRO_0000434627.
COMPBIAS 42 64 Ser-rich. {ECO:0000255|PROSITE-
ProRule:PRU00016}.
COMPBIAS 461 477 Ser-rich. {ECO:0000255|PROSITE-
ProRule:PRU00016}.
CONFLICT 559 559 C -> Y (in Ref. 3; BAF00799).
{ECO:0000305}.
SEQUENCE 625 AA; 69454 MW; 9179580038344851 CRC64;
MSSSHNRSNN NNSEGAKAEQ IIFEFFAKSL HIILESRTPF MSSRNFSGEQ MICSPSSSSS
SSSSVRPRDK WFNLALRECP AALESFDIGR RSSLEPLVVD VVLVVRPLVG DQSGKRELIR
NFSGKDYQSG WNSDQDELGC ETKNEQIIER WVVQYDNRKI RESVTTSSRR SSSNKLQVMY
KKATLLLRSL FVMVRLLPAY KIFRELNSSG QIFKFKLVPR VPSIVEPFTR KEEAEMQKFS
FTPVETICGR LCLSVLYRSL SDVSCEHSTP MSPTFITDYV GSPLADPLKR FPSLPLSYGS
PPLLPFQRRH SWSFDRYKAS PPSVSCSPSP TRSDSHALVS HPCSRHLPPH PSDIPTGRRK
ESYPEEYSPC QDFSPPPSPS APKHAVPRGI TRTESAPVRI PAPTFQSKEN VVAPSAHLKL
SRHASLKPVR NLGPGESGAA IDKLFLYGRD DFRRPSGVRP SSSSSPRISF SRSSSRSFQD
DFDDPDFPCP FDVEYDDITD RNSRPGSFDH RGDIHEPFDS SGSYPKKSQD AAVGALVRML
KKAPPLRQDV SESSRPEICS NNNKPAGAHE IAVASITASG IALASKTTAD ALEELRSYKE
MKNHLLLGQS TSNPSSVTIT SPFDV


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