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Auxin response factor 10

 ARFJ_ARATH              Reviewed;         693 AA.
Q9SKN5; B2CTC0; B2CTC4; B2CTD5; B2CTE0; Q0WQZ3; Q9SQ86;
26-APR-2004, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
23-MAY-2018, entry version 127.
RecName: Full=Auxin response factor 10;
Name=ARF10; OrderedLocusNames=At2g28350; ORFNames=T1B3.13;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], DIMERIZATION, AND TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
PubMed=10476078; DOI=10.1046/j.1365-313X.1999.00538.x;
Ulmasov T., Hagen G., Guilfoyle T.J.;
"Dimerization and DNA binding of auxin response factors.";
Plant J. 19:309-319(1999).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 365-526, AND VARIANTS ASP-411;
SER-473 AND ASN-475 DEL.
STRAIN=cv. Ag-0, cv. An-1, cv. Bay-0, cv. Br-0, cv. C24, cv. Ct-1,
cv. Cvi-1, cv. Edi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0, cv. Kas-2,
cv. Ll-0, cv. Mrk-0, cv. Ms-0, cv. Mt-0, cv. Nd-1, cv. Nok-3,
cv. Oy-0, cv. Sorbo, cv. Wassilewskija, cv. Wei-0, and cv. Wt-5;
PubMed=18305205; DOI=10.1104/pp.108.116582;
Ehrenreich I.M., Purugganan M.D.;
"Sequence variation of microRNAs and their binding sites in
Arabidopsis.";
Plant Physiol. 146:1974-1982(2008).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 448-693.
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[7]
GENE FAMILY, NOMENCLATURE, AND FUNCTION.
PubMed=12036261; DOI=10.1023/A:1015207114117;
Hagen G., Guilfoyle T.J.;
"Auxin-responsive gene expression: genes, promoters and regulatory
factors.";
Plant Mol. Biol. 49:373-385(2002).
[8]
GENE FAMILY.
PubMed=18986826; DOI=10.1016/j.tplants.2008.09.006;
Swaminathan K., Peterson K., Jack T.;
"The plant B3 superfamily.";
Trends Plant Sci. 13:647-655(2008).
-!- FUNCTION: Auxin response factors (ARFs) are transcriptional
factors that bind specifically to the DNA sequence 5'-TGTCTC-3'
found in the auxin-responsive promoter elements (AuxREs). Could
act as transcriptional activator or repressor. Formation of
heterodimers with Aux/IAA proteins may alter their ability to
modulate early auxin response genes expression.
{ECO:0000269|PubMed:12036261}.
-!- SUBUNIT: Homodimers and heterodimers. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Nucleus.
-!- TISSUE SPECIFICITY: Expressed in the whole plant.
{ECO:0000269|PubMed:10476078}.
-!- DOMAIN: Interactions between auxin response factors (ARFs) and
Aux/IAA proteins occur through their C-terminal dimerization
domains III and IV.
-!- SIMILARITY: Belongs to the ARF family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAF04627.1; Type=Frameshift; Positions=275, 282, 286, 683, 688; Evidence={ECO:0000305};
Sequence=BAF00456.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AF099735; AAF04627.1; ALT_FRAME; mRNA.
EMBL; AC006283; AAD20695.1; -; Genomic_DNA.
EMBL; CP002685; AEC08110.1; -; Genomic_DNA.
EMBL; AF325073; AAK17141.1; -; mRNA.
EMBL; AF336919; AAG54000.1; -; mRNA.
EMBL; EU550097; ACB30883.1; -; Genomic_DNA.
EMBL; EU550098; ACB30884.1; -; Genomic_DNA.
EMBL; EU550099; ACB30885.1; -; Genomic_DNA.
EMBL; EU550100; ACB30886.1; -; Genomic_DNA.
EMBL; EU550101; ACB30887.1; -; Genomic_DNA.
EMBL; EU550102; ACB30888.1; -; Genomic_DNA.
EMBL; EU550103; ACB30889.1; -; Genomic_DNA.
EMBL; EU550104; ACB30890.1; -; Genomic_DNA.
EMBL; EU550105; ACB30891.1; -; Genomic_DNA.
EMBL; EU550106; ACB30892.1; -; Genomic_DNA.
EMBL; EU550107; ACB30893.1; -; Genomic_DNA.
EMBL; EU550108; ACB30894.1; -; Genomic_DNA.
EMBL; EU550109; ACB30895.1; -; Genomic_DNA.
EMBL; EU550110; ACB30896.1; -; Genomic_DNA.
EMBL; EU550111; ACB30897.1; -; Genomic_DNA.
EMBL; EU550112; ACB30898.1; -; Genomic_DNA.
EMBL; EU550113; ACB30899.1; -; Genomic_DNA.
EMBL; EU550114; ACB30900.1; -; Genomic_DNA.
EMBL; EU550115; ACB30901.1; -; Genomic_DNA.
EMBL; EU550116; ACB30902.1; -; Genomic_DNA.
EMBL; EU550117; ACB30903.1; -; Genomic_DNA.
EMBL; EU550118; ACB30904.1; -; Genomic_DNA.
EMBL; EU550119; ACB30905.1; -; Genomic_DNA.
EMBL; AK228534; BAF00456.1; ALT_INIT; mRNA.
PIR; G84683; G84683.
RefSeq; NP_180402.1; NM_128394.5.
UniGene; At.13730; -.
ProteinModelPortal; Q9SKN5; -.
SMR; Q9SKN5; -.
BioGrid; 2732; 8.
IntAct; Q9SKN5; 13.
STRING; 3702.AT2G28350.1; -.
PaxDb; Q9SKN5; -.
PRIDE; Q9SKN5; -.
EnsemblPlants; AT2G28350.1; AT2G28350.1; AT2G28350.
GeneID; 817382; -.
Gramene; AT2G28350.1; AT2G28350.1; AT2G28350.
KEGG; ath:AT2G28350; -.
Araport; AT2G28350; -.
TAIR; locus:2057517; AT2G28350.
eggNOG; ENOG410IGAY; Eukaryota.
eggNOG; ENOG410ZZ2C; LUCA.
InParanoid; Q9SKN5; -.
OMA; TEHAHAP; -.
OrthoDB; EOG093603PN; -.
PhylomeDB; Q9SKN5; -.
PRO; PR:Q9SKN5; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; Q9SKN5; baseline and differential.
Genevisible; Q9SKN5; AT.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0003700; F:DNA binding transcription factor activity; ISS:TAIR.
GO; GO:0035198; F:miRNA binding; ISS:TAIR.
GO; GO:0009738; P:abscisic acid-activated signaling pathway; IMP:TAIR.
GO; GO:0009734; P:auxin-activated signaling pathway; IMP:TAIR.
GO; GO:0051301; P:cell division; IGI:TAIR.
GO; GO:0048589; P:developmental growth; IMP:TAIR.
GO; GO:0010154; P:fruit development; IMP:TAIR.
GO; GO:0048366; P:leaf development; IMP:TAIR.
GO; GO:0007389; P:pattern specification process; IDA:TAIR.
GO; GO:0048441; P:petal development; IMP:TAIR.
GO; GO:0031540; P:regulation of anthocyanin biosynthetic process; IMP:TAIR.
GO; GO:0009743; P:response to carbohydrate; IMP:TAIR.
GO; GO:0048829; P:root cap development; IMP:TAIR.
GO; GO:0048442; P:sepal development; IMP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd10017; B3_DNA; 1.
Gene3D; 2.40.330.10; -; 1.
InterPro; IPR010525; Auxin_resp.
InterPro; IPR003340; B3_DNA-bd.
InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
InterPro; IPR000270; PB1_dom.
Pfam; PF06507; Auxin_resp; 1.
Pfam; PF02362; B3; 1.
SMART; SM01019; B3; 1.
SUPFAM; SSF101936; SSF101936; 1.
PROSITE; PS50863; B3; 1.
PROSITE; PS51745; PB1; 1.
2: Evidence at transcript level;
Auxin signaling pathway; Complete proteome; DNA-binding; Nucleus;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1 693 Auxin response factor 10.
/FTId=PRO_0000111514.
DOMAIN 580 668 PB1. {ECO:0000255|PROSITE-
ProRule:PRU01081}.
DNA_BIND 115 217 TF-B3. {ECO:0000255|PROSITE-
ProRule:PRU00326}.
VARIANT 411 411 H -> D (in strain: cv. Ag-0, cv. Bay-0,
cv. Br-0, cv. C24, cv. Ct-1, cv. CVi-0,
cv. Edi-0, cv. Ei-2, cv. Ga-0, cv. Gy-0,
cv. Kas-2, cv. Ll-0, cv. Mrk-0, cv. Ms-0,
cv. Mt-0, cv. Nd-1, cv. Nok-3, cv. Oy-0,
cv. Sorbo, cv. Wassilewskija, cv. Wei-0
and cv. Wt-5).
{ECO:0000269|PubMed:18305205}.
VARIANT 473 473 G -> S (in strain: cv. Nd-1).
{ECO:0000269|PubMed:18305205}.
VARIANT 475 475 Missing (in strain: cv. Bay-0, cv. Ga-0,
cv. Ms-0 and cv. Oy-0).
{ECO:0000269|PubMed:18305205}.
CONFLICT 156 156 I -> N (in Ref. 1; AAF04627).
{ECO:0000305}.
CONFLICT 397 397 R -> W (in Ref. 1; AAF04627).
{ECO:0000305}.
CONFLICT 585 585 V -> I (in Ref. 6; BAF00456).
{ECO:0000305}.
CONFLICT 604 604 Y -> V (in Ref. 1; AAF04627).
{ECO:0000305}.
CONFLICT 620 620 R -> G (in Ref. 6; BAF00456).
{ECO:0000305}.
CONFLICT 621 621 S -> P (in Ref. 1; AAF04627).
{ECO:0000305}.
CONFLICT 624 624 L -> V (in Ref. 1; AAF04627).
{ECO:0000305}.
CONFLICT 628 628 V -> G (in Ref. 1; AAF04627).
{ECO:0000305}.
SEQUENCE 693 AA; 76721 MW; 6D3002534DC6F9E7 CRC64;
MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV
SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP SSDGNGNGKE KPASFAKTLT
QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL
TTGWSTFVNQ KKLIAGDSIV FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD
DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ
VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI RIPQPFEFPF HGTKFPIFSP
GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP
AMFLSSFNPR HHHYQARDSE NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL
TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI
GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA


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