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Barrier-to-autointegration factor A

 BAFA_XENLA              Reviewed;          90 AA.
Q6NTS2; A3KNC4;
21-FEB-2006, integrated into UniProtKB/Swiss-Prot.
05-JUL-2004, sequence version 1.
25-OCT-2017, entry version 56.
RecName: Full=Barrier-to-autointegration factor A;
Name=banf1-a; Synonyms=baf-a;
Xenopus laevis (African clawed frog).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus;
Xenopus.
NCBI_TaxID=8355;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Egg, and Embryo;
NIH - Xenopus Gene Collection (XGC) project;
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
[2]
PHOSPHORYLATION.
PubMed=16371512; DOI=10.1091/mbc.E05-04-0356;
Bengtsson L., Wilson K.L.;
"Barrier-to-autointegration factor phosphorylation on Ser-4 regulates
emerin binding to lamin A in vitro and emerin localization in vivo.";
Mol. Biol. Cell 17:1154-1163(2006).
[3]
SUBCELLULAR LOCATION, INTERACTION WITH NEMP1A AND NEMP1B, AND
DEVELOPMENTAL STAGE.
PubMed=19167377; DOI=10.1016/j.ydbio.2008.12.038;
Mamada H., Takahashi N., Taira M.;
"Involvement of an inner nuclear membrane protein, Nemp1, in Xenopus
neural development through an interaction with the chromatin protein
BAF.";
Dev. Biol. 327:497-507(2009).
-!- FUNCTION: Plays fundamental roles in nuclear assembly, chromatin
organization, gene expression and gonad development. May potently
compress chromatin structure and be involved in membrane
recruitment and chromatin decondensation during nuclear assembly.
Contains 2 non-specific dsDNA-binding sites which may promote DNA
cross-bridging (By similarity). {ECO:0000250}.
-!- SUBUNIT: Homodimer. Binds non-specifically to double-stranded DNA,
and is found as hexamer or dodecamer upon DNA binding. Binds to
LEM domain-containing nuclear proteins (By similarity). Interacts
with nemp1a and nemp1b. {ECO:0000250,
ECO:0000269|PubMed:19167377}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:19167377}.
Nucleus envelope {ECO:0000269|PubMed:19167377}. Chromosome
{ECO:0000250}. Note=Colocalizes with nemp1a and nemp1b at the
nuclear envelope. {ECO:0000269|PubMed:19167377}.
-!- DEVELOPMENTAL STAGE: At the early gastrula stage, expressed mainly
in the entire animal hemisphere. During neurulation, its
expression becomes restricted to the anterior neuroectoderm. At
the tailbud stage, expressed in various anterior regions including
the anterior central nervous system (CNS), otic vesicles, and
branchial arches. {ECO:0000269|PubMed:19167377}.
-!- PTM: Phosphorylated during S and M phases.
{ECO:0000269|PubMed:16371512}.
-!- SIMILARITY: Belongs to the BAF family. {ECO:0000305}.
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EMBL; BC068883; AAH68883.1; -; mRNA.
EMBL; BC133759; AAI33760.1; -; mRNA.
RefSeq; NP_001084558.1; NM_001091089.1.
UniGene; Xl.23149; -.
ProteinModelPortal; Q6NTS2; -.
SMR; Q6NTS2; -.
PRIDE; Q6NTS2; -.
GeneID; 414508; -.
KEGG; xla:414508; -.
CTD; 414508; -.
Xenbase; XB-GENE-6078848; banf1.
HOVERGEN; HBG029345; -.
KO; K21870; -.
GO; GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.
GO; GO:0005635; C:nuclear envelope; IDA:UniProtKB.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
Gene3D; 1.10.150.40; -; 1.
InterPro; IPR004122; BAF_prot.
InterPro; IPR036617; BAF_sf.
PANTHER; PTHR12912; PTHR12912; 1.
Pfam; PF02961; BAF; 1.
ProDom; PD019964; PD019964; 1.
SMART; SM01023; BAF; 1.
SUPFAM; SSF47798; SSF47798; 1.
1: Evidence at protein level;
Chromosome; DNA-binding; Nucleus; Phosphoprotein.
CHAIN 1 90 Barrier-to-autointegration factor A.
/FTId=PRO_0000223614.
SEQUENCE 90 AA; 10206 MW; C230A7184744060B CRC64;
MSSTSQKHRD FVAEPMGEKS VQCLAGIGEA LGHRLEEKGF DKAYVVLGQF LVLKKDEELF
KEWLKDICSA NAKQSRDCYG CLKEWCDAFL


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