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Baseplate protein gp16 (Gene product 16) (Gp16) (Tail-associated lysine-like protein)

 GP16_BPLP2              Reviewed;         375 AA.
D3KFX4; D3WAD4;
02-NOV-2016, integrated into UniProtKB/Swiss-Prot.
23-MAR-2010, sequence version 1.
25-OCT-2017, entry version 16.
RecName: Full=Baseplate protein gp16 {ECO:0000303|PubMed:20351260};
AltName: Full=Gene product 16 {ECO:0000305};
Short=Gp16 {ECO:0000305};
AltName: Full=Tail-associated lysine-like protein {ECO:0000303|PubMed:24027307};
Lactococcus phage p2 (Lactococcus lactis bacteriophage p2).
Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae;
Sk1virus.
NCBI_TaxID=254252;
NCBI_TaxID=1358; Lactococcus lactis.
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Tremblay D.M., Deveau H., Moineau S.;
"Complete genomic sequence of Lactococcus lactis phage p2.";
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000244|PDB:2WZP}
X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS), SUBCELLULAR LOCATION, SUBUNIT,
AND FUNCTION.
PubMed=20351260; DOI=10.1073/pnas.1000232107;
Sciara G., Bebeacua C., Bron P., Tremblay D., Ortiz-Lombardia M.,
Lichiere J., van Heel M., Campanacci V., Moineau S., Cambillau C.;
"Structure of lactococcal phage p2 baseplate and its mechanism of
activation.";
Proc. Natl. Acad. Sci. U.S.A. 107:6852-6857(2010).
[3]
STRUCTURE BY ELECTRON MICROSCOPY (22 ANGSTROMS) OF THE TAIL, AND
SUBCELLULAR LOCATION.
PubMed=24027307; DOI=10.1128/JVI.02033-13;
Bebeacua C., Tremblay D., Farenc C., Chapot-Chartier M.P.,
Sadovskaya I., van Heel M., Veesler D., Moineau S., Cambillau C.;
"Structure, adsorption to host, and infection mechanism of virulent
lactococcal phage p2.";
J. Virol. 87:12302-12312(2013).
-!- FUNCTION: Forms a dome thereby closing the central channel at the
end of the baseplate. Changes its conformation upon activation by
calcium allowing the channel to open at the bottom of the
baseplate for DNA ejection. {ECO:0000269|PubMed:20351260}.
-!- SUBUNIT: Homotrimer. {ECO:0000269|PubMed:20351260}.
-!- INTERACTION:
D3WAD3:-; NbExp=8; IntAct=EBI-15845184, EBI-15845172;
-!- SUBCELLULAR LOCATION: Virion {ECO:0000269|PubMed:20351260,
ECO:0000269|PubMed:24027307}. Note=Part of the baseplate.
{ECO:0000269|PubMed:20351260}.
-!- SIMILARITY: Belongs to the skunalikevirus baseplate protein gp16
family. {ECO:0000305}.
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EMBL; GQ979703; ADC80091.1; -; Genomic_DNA.
PDB; 2WZP; X-ray; 2.60 A; R=1-375.
PDBsum; 2WZP; -.
SMR; D3KFX4; -.
DIP; DIP-59524N; -.
IntAct; D3KFX4; 1.
OrthoDB; VOG090000B2; -.
EvolutionaryTrace; D3KFX4; -.
Proteomes; UP000002348; Genome.
GO; GO:0098025; C:virus tail, baseplate; IEA:UniProtKB-KW.
GO; GO:0099001; P:viral genome ejection through host cell envelope, long flexible tail mechanism; IEA:UniProtKB-KW.
InterPro; IPR031861; Caudo_ORF16.
Pfam; PF16792; Caudo_bapla16; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Viral baseplate protein;
Viral genome ejection through host cell envelope;
Viral long flexible tail ejection system;
Viral penetration into host cytoplasm; Viral tail protein; Virion;
Virus entry into host cell.
CHAIN 1 375 Baseplate protein gp16.
/FTId=PRO_0000438235.
STRAND 2 8 {ECO:0000244|PDB:2WZP}.
HELIX 12 15 {ECO:0000244|PDB:2WZP}.
STRAND 36 49 {ECO:0000244|PDB:2WZP}.
STRAND 55 61 {ECO:0000244|PDB:2WZP}.
STRAND 68 80 {ECO:0000244|PDB:2WZP}.
STRAND 82 84 {ECO:0000244|PDB:2WZP}.
STRAND 86 100 {ECO:0000244|PDB:2WZP}.
STRAND 104 110 {ECO:0000244|PDB:2WZP}.
HELIX 111 115 {ECO:0000244|PDB:2WZP}.
TURN 116 118 {ECO:0000244|PDB:2WZP}.
HELIX 123 126 {ECO:0000244|PDB:2WZP}.
STRAND 127 129 {ECO:0000244|PDB:2WZP}.
HELIX 130 137 {ECO:0000244|PDB:2WZP}.
TURN 140 142 {ECO:0000244|PDB:2WZP}.
STRAND 150 152 {ECO:0000244|PDB:2WZP}.
HELIX 154 157 {ECO:0000244|PDB:2WZP}.
HELIX 165 167 {ECO:0000244|PDB:2WZP}.
HELIX 172 183 {ECO:0000244|PDB:2WZP}.
STRAND 188 193 {ECO:0000244|PDB:2WZP}.
STRAND 202 208 {ECO:0000244|PDB:2WZP}.
STRAND 211 214 {ECO:0000244|PDB:2WZP}.
STRAND 218 222 {ECO:0000244|PDB:2WZP}.
HELIX 224 226 {ECO:0000244|PDB:2WZP}.
STRAND 229 232 {ECO:0000244|PDB:2WZP}.
TURN 235 237 {ECO:0000244|PDB:2WZP}.
STRAND 242 248 {ECO:0000244|PDB:2WZP}.
TURN 251 254 {ECO:0000244|PDB:2WZP}.
STRAND 261 265 {ECO:0000244|PDB:2WZP}.
STRAND 271 273 {ECO:0000244|PDB:2WZP}.
HELIX 274 276 {ECO:0000244|PDB:2WZP}.
STRAND 290 295 {ECO:0000244|PDB:2WZP}.
HELIX 306 310 {ECO:0000244|PDB:2WZP}.
STRAND 320 325 {ECO:0000244|PDB:2WZP}.
STRAND 337 342 {ECO:0000244|PDB:2WZP}.
STRAND 345 356 {ECO:0000244|PDB:2WZP}.
STRAND 361 366 {ECO:0000244|PDB:2WZP}.
TURN 371 373 {ECO:0000244|PDB:2WZP}.
SEQUENCE 375 AA; 42837 MW; D07CB9AFE7A4F20F CRC64;
MLEANVYDNF NPNYYNISDF SMPNGKKEKR GLPIPKARCQ VINYELWETG YLYTSSATLT
VSVEVGDIVQ ILFPEVVPIE EALGKKKKLN LDMVYLVTDV DESNKATLKN YFWAMIESLD
VPNAITKTTN FAIIDYLIDP NKNNLMSYGY FFNSSIFAGK ATINRKAETS SAHDVAKRIF
SKVQFQPTTT IQHAPSETDP RNLLFINFAS RNWNRKRITT RVDIKQSVTM DTETIVERSA
YNFAVVFVKN KATDDYTDPP KMYIAKNNGD VIDYSTYHGD GTDLPDVRTA KTLFYDRDDH
GNPPELSTIK VEISPSTIVT RLIFNQNELL PLYVNDLVDI WYEGKLYSGY IADRVKTEFN
DRLIFVESGD KPNVI


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