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BcDNA.GH02678 (Vacuolar protein sorting 4, isoform A) (EC 3.6.1.3) (Vacuolar protein sorting 4, isoform B)

 Q9Y162_DROME            Unreviewed;       442 AA.
Q9Y162;
01-NOV-1999, integrated into UniProtKB/TrEMBL.
01-NOV-1999, sequence version 1.
25-OCT-2017, entry version 160.
SubName: Full=BcDNA.GH02678 {ECO:0000313|EMBL:AAD38581.1};
SubName: Full=Vacuolar protein sorting 4, isoform A {ECO:0000313|EMBL:AAF48783.1};
EC=3.6.1.3 {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|EMBL:AHN59866.1};
SubName: Full=Vacuolar protein sorting 4, isoform B {ECO:0000313|EMBL:AHN59866.1};
Name=Vps4 {ECO:0000313|EMBL:AAF48783.1,
ECO:0000313|FlyBase:FBgn0283469};
Synonyms=3B1 {ECO:0000313|EMBL:AAF48783.1},
BcDNA.GH02678 {ECO:0000313|EMBL:AAD38581.1},
BcDNA:GH02678 {ECO:0000313|EMBL:AAF48783.1},
bcDNA:GH02678 {ECO:0000313|EMBL:AAF48783.1},
CG6842 {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|FlyBase:FBgn0283469},
DmBcDNA.GH02678 {ECO:0000313|EMBL:AAF48783.1},
Dmel\CG6842 {ECO:0000313|EMBL:AAF48783.1},
Dvps4 {ECO:0000313|EMBL:AAF48783.1},
dvps4 {ECO:0000313|EMBL:AAF48783.1},
vps4 {ECO:0000313|EMBL:AAF48783.1},
Vps4B {ECO:0000313|EMBL:AAF48783.1};
ORFNames=Dmel_CG6842 {ECO:0000313|EMBL:AAF48783.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAD38581.1}
NUCLEOTIDE SEQUENCE.
Rubin G.M., Wan K.H., Harvey D., Lewis S.E., Brokstein P., Tsang G.,
Agbayani A., Arcaina T.T., Baxter E., Blazej R.G., Butenhoff C.,
Champe M., Chavez C., Chew M., Doyle C.M., Farfan D.E., Frise E.,
Galle R., George R.A., Harris N.L., Hoskins R.A., Evans-Holm M.,
Houston K.A., Hummasti S.R., Kim E., Li P., Moshrefi M., Pacleb J.M.,
Park S., Sequeira A., Sethi H., Snir E., Svirskas R.R., Weinburg T.,
Celniker S.E.;
"Full length Drosophila melanogaster cDNA sequence.";
Submitted (APR-1999) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[3] {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[4] {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[5] {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[6] {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[7] {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[8] {ECO:0000313|EMBL:AAF48783.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF48783.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[11] {ECO:0000313|EMBL:AAF48783.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[12] {ECO:0000313|EMBL:AAF48783.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-!- SIMILARITY: Belongs to the AAA ATPase family.
{ECO:0000256|RuleBase:RU003651, ECO:0000256|SAAS:SAAS00552016}.
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EMBL; AF145606; AAD38581.1; -; mRNA.
EMBL; AE014298; AAF48783.1; -; Genomic_DNA.
EMBL; AE014298; AHN59866.1; -; Genomic_DNA.
RefSeq; NP_001285396.1; NM_001298467.1.
RefSeq; NP_573258.1; NM_133030.4.
UniGene; Dm.3175; -.
SMR; Q9Y162; -.
IntAct; Q9Y162; 3.
MINT; MINT-919908; -.
STRING; 7227.FBpp0074278; -.
EnsemblMetazoa; FBtr0074504; FBpp0074278; FBgn0027605.
EnsemblMetazoa; FBtr0342787; FBpp0309628; FBgn0027605.
GeneID; 32777; -.
KEGG; dme:Dmel_CG6842; -.
UCSC; CG6842-RA; d. melanogaster.
CTD; 32777; -.
FlyBase; FBgn0283469; Vps4.
eggNOG; KOG0739; Eukaryota.
eggNOG; ENOG410XRHN; LUCA.
GeneTree; ENSGT00550000074466; -.
KO; K12196; -.
OMA; VRWNDVA; -.
Reactome; R-DME-917729; Endosomal Sorting Complex Required For Transport (ESCRT).
ChiTaRS; Vps4; fly.
GenomeRNAi; 32777; -.
Proteomes; UP000000803; Chromosome X.
Bgee; FBgn0027605; -.
GO; GO:0005768; C:endosome; ISS:FlyBase.
GO; GO:1990621; C:ESCRT IV complex; ISS:FlyBase.
GO; GO:0005634; C:nucleus; IBA:GO_Central.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0016887; F:ATPase activity; ISS:FlyBase.
GO; GO:0030036; P:actin cytoskeleton organization; IMP:FlyBase.
GO; GO:0097352; P:autophagosome maturation; IMP:FlyBase.
GO; GO:0045197; P:establishment or maintenance of epithelial cell apical/basal polarity; IMP:FlyBase.
GO; GO:0044130; P:negative regulation of growth of symbiont in host; IMP:FlyBase.
GO; GO:0045746; P:negative regulation of Notch signaling pathway; IMP:FlyBase.
GO; GO:0016322; P:neuron remodeling; IMP:FlyBase.
GO; GO:0006909; P:phagocytosis; IMP:FlyBase.
GO; GO:0045742; P:positive regulation of epidermal growth factor receptor signaling pathway; IMP:FlyBase.
GO; GO:0045463; P:R8 cell development; IMP:FlyBase.
GO; GO:0045470; P:R8 cell-mediated photoreceptor organization; IMP:FlyBase.
GO; GO:0043162; P:ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway; IMP:FlyBase.
InterPro; IPR003593; AAA+_ATPase.
InterPro; IPR003959; ATPase_AAA_core.
InterPro; IPR003960; ATPase_AAA_CS.
InterPro; IPR007330; MIT.
InterPro; IPR036181; MIT_dom_sf.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR015415; Vps4_C.
Pfam; PF00004; AAA; 1.
Pfam; PF04212; MIT; 1.
Pfam; PF09336; Vps4_C; 1.
SMART; SM00382; AAA; 1.
SMART; SM00745; MIT; 1.
SUPFAM; SSF116846; SSF116846; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS00674; AAA; 1.
1: Evidence at protein level;
ATP-binding {ECO:0000256|RuleBase:RU003651,
ECO:0000256|SAAS:SAAS00552105};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Hydrolase {ECO:0000313|EMBL:AAF48783.1};
Nucleotide-binding {ECO:0000256|RuleBase:RU003651,
ECO:0000256|SAAS:SAAS00552105};
Proteomics identification {ECO:0000213|PeptideAtlas:Q9Y162};
Reference proteome {ECO:0000313|Proteomes:UP000000803}.
DOMAIN 3 82 MIT. {ECO:0000259|SMART:SM00745}.
DOMAIN 164 300 AAA. {ECO:0000259|SMART:SM00382}.
SEQUENCE 442 AA; 49596 MW; 1E4AE859D6758023 CRC64;
MAAGTTLQKA IDLVTKATEE DRNKNYAEAL RLYEHGVEYF LHTIKYEAQG EKAKDSIRAK
CLQYLDRAEK LKEYLKKGKK KPIKEGGESS AKDDKDKKSD SDDEDGDDPE KKKLQSKLED
AIVIEKPKVQ WSDVAGLDAA KEALKEAVIL PIKFPQLFTG KRIPWKGILL FGPPGTGKSY
LAKAVATEAN RSTFFSVSSS DLMSKWLGES EKLVKNLFEL ARQHKPSIIF IDEIDSMCSA
RSDNENDSVR RIKTEFLVQM QGVGNDTDGI LVLGATNIPW VLDSAIRRRF EKRIYIPLPE
AHARLVMFKI HLGNTTHVLT EQDLKELAGK TEGYSGADIS IVVRDALMEP VRKVQTATHF
KRVSGPSPTN HEEIVNDLLV PCSPGDQGAV EMNWMDVPSD KLFEPPVTMR DMLKSLSRTK
PTVNEDDLKK LRKFTEDFGQ EG


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