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Bdnf protein (Brain-derived neurotrophic factor)

 Q6NZ01_DANRE            Unreviewed;       270 AA.
Q6NZ01;
05-JUL-2004, integrated into UniProtKB/TrEMBL.
05-JUL-2004, sequence version 1.
30-AUG-2017, entry version 102.
SubName: Full=Bdnf protein {ECO:0000313|EMBL:AAH66468.1};
SubName: Full=Brain-derived neurotrophic factor {ECO:0000313|EMBL:AAH66399.1, ECO:0000313|Ensembl:ENSDARP00000010990};
Name=bdnf {ECO:0000313|EMBL:AAH66399.1,
ECO:0000313|Ensembl:ENSDARP00000010990,
ECO:0000313|ZFIN:ZDB-GENE-000412-1};
Danio rerio (Zebrafish) (Brachydanio rerio).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
Cyprinidae; Danio.
NCBI_TaxID=7955 {ECO:0000313|EMBL:AAH66399.1};
[1] {ECO:0000313|EMBL:AAH58301.1}
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Embryo {ECO:0000313|EMBL:AAH58301.1};
NIH - Zebrafish Gene Collection (ZGC) project;
Submitted (SEP-2003) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:AAH66399.1}
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Embryo {ECO:0000313|EMBL:AAH66399.1};
NIH - Zebrafish Gene Collection (ZGC) project;
Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|Ensembl:ENSDARP00000010990}
IDENTIFICATION.
STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000010990};
Ensembl;
Submitted (FEB-2012) to UniProtKB.
[4] {ECO:0000313|Ensembl:ENSDARP00000010990, ECO:0000313|Proteomes:UP000000437}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000010990,
ECO:0000313|Proteomes:UP000000437};
PubMed=23594743; DOI=10.1038/nature12111;
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C.,
Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L.,
McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C.,
Koch R., Rauch G.J., White S., Chow W., Kilian B., Quintais L.T.,
Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T.,
Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F.,
Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H.,
Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J.,
Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P.,
Barker N., Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G.,
Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D.,
Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K.,
Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C.,
Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J.,
Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
Saunders D., Wallis J., Babbage A., Hammond S.,
Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A.,
Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D.,
Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z.,
Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J.,
Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C.,
Raddatz G., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C.,
Yang F., Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J.,
Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C.,
Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H.,
Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J.,
Stemple D.L.;
"The zebrafish reference genome sequence and its relationship to the
human genome.";
Nature 496:498-503(2013).
-!- SIMILARITY: Belongs to the NGF-beta family.
{ECO:0000256|SAAS:SAAS00543519}.
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EMBL; AL935207; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CU459028; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC058301; AAH58301.1; -; mRNA.
EMBL; BC066399; AAH66399.1; -; mRNA.
EMBL; BC066468; AAH66468.1; -; mRNA.
RefSeq; NP_001295578.1; NM_001308649.1.
RefSeq; NP_571670.2; NM_131595.2.
RefSeq; XP_009301509.1; XM_009303234.2.
UniGene; Dr.132862; -.
STRING; 7955.ENSDARP00000010990; -.
Ensembl; ENSDART00000014843; ENSDARP00000010990; ENSDARG00000018817.
Ensembl; ENSDART00000131009; ENSDARP00000108984; ENSDARG00000018817.
GeneID; 58118; -.
CTD; 627; -.
ZFIN; ZDB-GENE-000412-1; bdnf.
eggNOG; ENOG410IH7X; Eukaryota.
eggNOG; ENOG410XRPH; LUCA.
GeneTree; ENSGT00390000007725; -.
HOGENOM; HOG000231516; -.
HOVERGEN; HBG006494; -.
OMA; RVGWRFI; -.
OrthoDB; EOG091G0GHL; -.
TreeFam; TF106463; -.
Proteomes; UP000000437; Chromosome 7.
Bgee; ENSDARG00000018817; -.
GO; GO:0031410; C:cytoplasmic vesicle; IBA:GO_Central.
GO; GO:0005576; C:extracellular region; IBA:GO_Central.
GO; GO:0008083; F:growth factor activity; IBA:GO_Central.
GO; GO:0005169; F:neurotrophin TRKB receptor binding; IBA:GO_Central.
GO; GO:0007420; P:brain development; IEP:ZFIN.
GO; GO:0007267; P:cell-cell signaling; IBA:GO_Central.
GO; GO:0071542; P:dopaminergic neuron differentiation; IMP:ZFIN.
GO; GO:0033555; P:multicellular organismal response to stress; IEP:ZFIN.
GO; GO:0043524; P:negative regulation of neuron apoptotic process; IBA:GO_Central.
GO; GO:0048812; P:neuron projection morphogenesis; IBA:GO_Central.
GO; GO:0045664; P:regulation of neuron differentiation; IBA:GO_Central.
GO; GO:0007169; P:transmembrane receptor protein tyrosine kinase signaling pathway; IBA:GO_Central.
Gene3D; 2.10.90.10; -; 1.
InterPro; IPR020430; Brain-der_neurotrophic_factor.
InterPro; IPR029034; Cystine-knot_cytokine.
InterPro; IPR020408; Nerve_growth_factor-like.
InterPro; IPR002072; Nerve_growth_factor-rel.
InterPro; IPR019846; Nerve_growth_factor_CS.
PANTHER; PTHR11589; PTHR11589; 1.
PANTHER; PTHR11589:SF15; PTHR11589:SF15; 1.
Pfam; PF00243; NGF; 1.
PIRSF; PIRSF001789; NGF; 1.
PRINTS; PR01912; BDNFACTOR.
PRINTS; PR00268; NGF.
ProDom; PD002052; Nerve_growth_factor-rel; 1.
SMART; SM00140; NGF; 1.
SUPFAM; SSF57501; SSF57501; 1.
PROSITE; PS00248; NGF_1; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000000437};
Disulfide bond {ECO:0000256|PIRSR:PIRSR001789-1,
ECO:0000256|SAAS:SAAS00022131};
Growth factor {ECO:0000256|SAAS:SAAS00426801};
Reference proteome {ECO:0000313|Proteomes:UP000000437};
Signal {ECO:0000256|SAM:SignalP}.
SIGNAL 1 18 {ECO:0000256|SAM:SignalP}.
CHAIN 19 270 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5010845302.
DOMAIN 156 263 NGF. {ECO:0000259|SMART:SM00140}.
DISULFID 164 231 {ECO:0000256|PIRSR:PIRSR001789-1}.
DISULFID 209 260 {ECO:0000256|PIRSR:PIRSR001789-1}.
DISULFID 219 262 {ECO:0000256|PIRSR:PIRSR001789-1}.
SEQUENCE 270 AA; 29453 MW; 982A5D7DAD952EAD CRC64;
MTILFVTMVI SYFSCMRAAP MREIPGVQGG HRAEGYLGAA AAAAAAVTSG SRGHGTPQSG
GGLPSLTDTF EQVIEELLEV EGEATQQLGP GADQGQGGGG PIDAADSKDV DLYASRVMIS
NQVPLEPPLL FLLEEYKNYL DAANMSMRVR RHSDPARRGE LSVCDSISQW VTAVDKKTAI
DMSGQTVTVL EKVPVTNGQL KQYFYETKCN PLGYTKEGCR GIDKRHYNSQ CRTTQSYVRA
LTMDSKRKIG WRFIRIDTSC VCTLTIKRGR


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