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Black, isoform A (Black, isoform B) (EC 4.1.1.11) (Glutamate decarboxylase) (LP11089p)

 Q24062_DROME            Unreviewed;       575 AA.
Q24062;
01-NOV-1996, integrated into UniProtKB/TrEMBL.
01-NOV-1996, sequence version 1.
05-DEC-2018, entry version 157.
SubName: Full=Black, isoform A {ECO:0000313|EMBL:AAF53337.1};
SubName: Full=Black, isoform B {ECO:0000313|EMBL:AFH03699.1};
EC=4.1.1.11 {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|EMBL:AFH03699.1};
SubName: Full=Glutamate decarboxylase {ECO:0000313|EMBL:AAC46466.1};
SubName: Full=LP11089p {ECO:0000313|EMBL:AAL39897.1};
Name=b {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|FlyBase:FBgn0000153};
Synonyms=ADC {ECO:0000313|EMBL:AAF53337.1},
anon-34Db {ECO:0000313|EMBL:AAF53337.1},
B {ECO:0000313|EMBL:AAF53337.1},
BG:DS00941.5 {ECO:0000313|EMBL:AAF53337.1},
cDNA 1 {ECO:0000313|EMBL:AAF53337.1},
DGad2 {ECO:0000313|EMBL:AAF53337.1},
Dmel\CG7811 {ECO:0000313|EMBL:AAF53337.1},
DmGad2 {ECO:0000313|EMBL:AAF53337.1},
Gad2 {ECO:0000313|EMBL:AAF53337.1},
GAD[[2]] {ECO:0000313|EMBL:AAF53337.1};
ORFNames=CG7811 {ECO:0000313|EMBL:AAF53337.1,
ECO:0000313|FlyBase:FBgn0000153},
Dmel_CG7811 {ECO:0000313|EMBL:AAF53337.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAC46466.1};
[1] {ECO:0000313|EMBL:AAC46466.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Oregon-R {ECO:0000313|EMBL:AAC46466.1};
TISSUE=Neural {ECO:0000313|EMBL:AAC46466.1};
PubMed=8376987; DOI=10.1111/j.1471-4159.1993.tb13621.x;
Phillips A.M., Salkoff L.B., Kelly L.E.;
"A neural gene from Drosophila melanogaster with homology to
vertebrate and invertebrate glutamate decarboxylases.";
J. Neurochem. 61:1291-1301(1993).
[2] {ECO:0000313|EMBL:AAC46466.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Oregon-R {ECO:0000313|EMBL:AAC46466.1};
TISSUE=Neural {ECO:0000313|EMBL:AAC46466.1};
Phillips M.A.;
Submitted (SEP-1993) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[4] {ECO:0000313|EMBL:AAL39897.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Berkeley {ECO:0000313|EMBL:AAL39897.1};
Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J.,
Champe M., Chavez C., Dorsett V., Farfan D., Frise E., George R.,
Gonzalez M., Guarin H., Li P., Liao G., Miranda A., Mungall C.J.,
Nunoo J., Pacleb J., Paragas V., Park S., Phouanenavong S., Wan K.,
Yu C., Lewis S.E., Rubin G.M., Celniker S.;
Submitted (DEC-2001) to the EMBL/GenBank/DDBJ databases.
[5] {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[6] {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[7] {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[8] {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[9] {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[10] {ECO:0000313|EMBL:AAF53337.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[11] {ECO:0000313|EMBL:AAF53337.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[12] {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[13] {ECO:0000313|EMBL:AAF53337.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[14] {ECO:0000313|EMBL:AAF53337.1}
NUCLEOTIDE SEQUENCE.
PubMed=26109357; DOI=.1534/g3.115.018929;
FlyBase Consortium;
Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B.,
St Pierre S.E., Gramates L.S., Zhou P., Schroeder A.J., Falls K.,
Strelets V., Russo S.M., Gelbart W.M.;
"Gene Model Annotations for Drosophila melanogaster: Impact of High-
Throughput Data.";
G3 (Bethesda) 5:1721-1736(2015).
[15] {ECO:0000313|EMBL:AAF53337.1}
NUCLEOTIDE SEQUENCE.
PubMed=26109356; DOI=.1534/g3.115.018937;
FlyBase Consortium;
Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B.,
St Pierre S.E., Zhou P., Schroeder A.J., Falls K., Emmert D.B.,
Russo S.M., Gelbart W.M.;
"Gene Model Annotations for Drosophila melanogaster: The Rule-
Benders.";
G3 (Bethesda) 5:1737-1749(2015).
[16] {ECO:0000313|EMBL:AAF53337.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
-!- COFACTOR:
Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
Evidence={ECO:0000256|PIRSR:PIRSR602129-50,
ECO:0000256|RuleBase:RU000382};
-!- SIMILARITY: Belongs to the group II decarboxylase family.
{ECO:0000256|RuleBase:RU000382}.
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EMBL; U01239; AAC46466.1; -; mRNA.
EMBL; AE014134; AAF53337.1; -; Genomic_DNA.
EMBL; AY069752; AAL39897.1; -; mRNA.
EMBL; AE014134; AFH03699.1; -; Genomic_DNA.
PIR; JH0827; JH0827.
RefSeq; NP_001246025.1; NM_001259096.2.
RefSeq; NP_476788.1; NM_057440.5.
UniGene; Dm.2850; -.
IntAct; Q24062; 1.
STRING; 7227.FBpp0301687; -.
EnsemblMetazoa; FBtr0080542; FBpp0080119; FBgn0000153.
EnsemblMetazoa; FBtr0309960; FBpp0301687; FBgn0000153.
GeneID; 34791; -.
KEGG; dme:Dmel_CG7811; -.
UCSC; CG7811-RA; d. melanogaster.
CTD; 34791; -.
FlyBase; FBgn0000153; b.
eggNOG; KOG0629; Eukaryota.
eggNOG; COG0076; LUCA.
GeneTree; ENSGT00940000158240; -.
KO; K01580; -.
OrthoDB; EOG091G07ZU; -.
Reactome; R-DME-1614558; Degradation of cysteine and homocysteine.
Reactome; R-DME-70614; Amino acid synthesis and interconversion (transamination).
ChiTaRS; CG31211; fly.
GenomeRNAi; 34791; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0000153; Expressed in 20 organ(s), highest expression level in adult organism.
GO; GO:0004068; F:aspartate 1-decarboxylase activity; IMP:FlyBase.
GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
GO; GO:0019483; P:beta-alanine biosynthetic process; TAS:FlyBase.
GO; GO:0048066; P:developmental pigmentation; TAS:FlyBase.
GO; GO:0006212; P:uracil catabolic process; TAS:FlyBase.
GO; GO:0007632; P:visual behavior; IMP:FlyBase.
Gene3D; 3.40.640.10; -; 1.
InterPro; IPR002129; PyrdxlP-dep_de-COase.
InterPro; IPR015424; PyrdxlP-dep_Trfase.
InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
Pfam; PF00282; Pyridoxal_deC; 1.
SUPFAM; SSF53383; SSF53383; 1.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Lyase {ECO:0000256|RuleBase:RU000382, ECO:0000313|EMBL:AAF53337.1};
Proteomics identification {ECO:0000213|PeptideAtlas:Q24062};
Pyridoxal phosphate {ECO:0000256|PIRSR:PIRSR602129-50,
ECO:0000256|RuleBase:RU000382};
Reference proteome {ECO:0000313|Proteomes:UP000000803}.
MOD_RES 387 387 N6-(pyridoxal phosphate)lysine.
{ECO:0000256|PIRSR:PIRSR602129-50}.
SEQUENCE 575 AA; 64796 MW; 5BE7DBF42247B441 CRC64;
MLASENFPTH HFKESIFKPY STTSGDDLAS VSPLTATAAL VASTSSPADS TSTVAFEQAS
KMLANAANNN NNNNNNITST KDDLSSFVAS HPAAEFEGFI RACVDEIIKL AVFQGTNRSS
KVVEWHEPAE LRQLFDFQLR EQGESQDKLR ELLRETIRFS VKTGHPYFIN QLYSGVDPYA
LVGQWLTDAL NPSVYTYEVA PLFTLMEEQV LAEMRRIVGF PNGGQGDGIF CPGGSIANGY
AISCARYRHS PESKKNGLFN AKPLIIFTSE DAHYSVEKLA MFMGFGSDHV RKIATNEVGK
MRLSDLEKQV KLCLENGWQP LMVSATAGTT VLGAFDDLAG ISEVCKKYNM WMHVDAAWGG
GALMSKKYRH LLNGIERADS VTWNPHKLLA ASQQCSTFLT RHQQVLAQCH STNATYLFQK
DKFYDTSFDT GDKHIQCGRR ADVFKFWFMW KAKGTQGLEA HVEKVFRMAE FFTAKVRERP
GFELVLESPE CTNISFWYVP PGLREMERNR EFYDRLHKVA PKVKEGMIKK GSMMITYQPL
RQLPNFFRLV LQNSCLEESD MVYFLDEIES LAQNL


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