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Broad-complex core protein isoform 6

 BRC4_DROME              Reviewed;         880 AA.
Q24206; O46064; Q9W575;
21-FEB-2001, integrated into UniProtKB/Swiss-Prot.
21-FEB-2001, sequence version 2.
18-JUL-2018, entry version 179.
RecName: Full=Broad-complex core protein isoform 6;
Name=br; Synonyms=Br-C; ORFNames=CG11491;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [MRNA], DEVELOPMENTAL STAGE, AND CHARACTERIZATION
OF ISOFORMS.
TISSUE=Imaginal disk, and Larva;
PubMed=8660872; DOI=10.1006/dbio.1996.0140;
Bayer C.A., Holley B., Fristrom J.W.;
"A switch in broad-complex zinc-finger isoform expression is regulated
posttranscriptionally during the metamorphosis of Drosophila imaginal
discs.";
Dev. Biol. 177:1-14(1996).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[3]
GENOME REANNOTATION.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Oregon-R;
PubMed=10731137; DOI=10.1126/science.287.5461.2220;
Benos P.V., Gatt M.K., Ashburner M., Murphy L., Harris D.,
Barrell B.G., Ferraz C., Vidal S., Brun C., Demailles J., Cadieu E.,
Dreano S., Gloux S., Lelaure V., Mottier S., Galibert F., Borkova D.,
Minana B., Kafatos F.C., Louis C., Siden-Kiamos I., Bolshakov S.,
Papagiannakis G., Spanos L., Cox S., Madueno E., de Pablos B.,
Modolell J., Peter A., Schoettler P., Werner M., Mourkioti F.,
Beinert N., Dowe G., Schaefer U., Jaeckle H., Bucheton A.,
Callister D.M., Campbell L.A., Darlamitsou A., Henderson N.S.,
McMillan P.J., Salles C., Tait E.A., Valenti P., Saunders R.D.C.,
Glover D.M.;
"From sequence to chromosome: the tip of the X chromosome of D.
melanogaster.";
Science 287:2220-2222(2000).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6).
STRAIN=Berkeley; TISSUE=Larva, and Pupae;
PubMed=12537569; DOI=10.1186/gb-2002-3-12-research0080;
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M.,
George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H.,
Rubin G.M., Celniker S.E.;
"A Drosophila full-length cDNA resource.";
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002).
[6]
CHARACTERIZATION OF ISOFORMS, AND MUTAGENESIS.
PubMed=9242423; DOI=10.1006/dbio.1997.8620;
Bayer C.A., von Kalm L., Fristrom J.W.;
"Relationships between protein isoforms and genetic functions
demonstrate functional redundancy at the Broad-Complex during
Drosophila metamorphosis.";
Dev. Biol. 187:267-282(1997).
-!- FUNCTION: Broad-complex proteins are required for puffing and
transcription of salivary gland late genes during metamorphosis.
-!- SUBCELLULAR LOCATION: Nucleus.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=6;
Name=6; Synonyms=BRCORE-Z4;
IsoId=Q24206-1; Sequence=Displayed;
Name=1; Synonyms=BRCORE-TNT1-Q1-Z1;
IsoId=Q01295-1; Sequence=External;
Name=2; Synonyms=BRCORE-Q1-Z1;
IsoId=Q01295-2; Sequence=External;
Name=3; Synonyms=BRCORE-Q2-Z1;
IsoId=Q01295-3; Sequence=External;
Name=4; Synonyms=BRCORE-Z2;
IsoId=Q01295-4; Sequence=External;
Name=5; Synonyms=BRCORE-NS-Z3;
IsoId=Q01295-5; Sequence=External;
-!- DEVELOPMENTAL STAGE: Accumulates to a high level at the beginning
of the ecdysone response, during the metamorphosis of imaginal
disks in puff stage 1, and abruptly disappears after several
hours. {ECO:0000269|PubMed:8660872}.
-!- INDUCTION: Induced as a primary response to 20-hydroxyecdysone in
third instar larval imaginal disks.
-!- SEQUENCE CAUTION:
Sequence=AAB09760.1; Type=Frameshift; Positions=534, 619, 656, 694; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; U51585; AAB09760.1; ALT_FRAME; mRNA.
EMBL; AE014298; AAF45647.1; -; Genomic_DNA.
EMBL; AL009146; CAA15627.1; -; Genomic_DNA.
EMBL; AY069756; AAL39901.1; -; mRNA.
RefSeq; NP_001138144.1; NM_001144672.3. [Q24206-1]
RefSeq; NP_001259134.1; NM_001272205.1. [Q24206-1]
RefSeq; NP_726751.2; NM_166895.2. [Q24206-1]
RefSeq; NP_726752.1; NM_166896.3. [Q24206-1]
RefSeq; NP_726753.1; NM_166897.2. [Q24206-1]
UniGene; Dm.20757; -.
ProteinModelPortal; Q24206; -.
SMR; Q24206; -.
BioGrid; 69091; 27.
DIP; DIP-18557N; -.
IntAct; Q24206; 11.
STRING; 7227.FBpp0303432; -.
PaxDb; Q24206; -.
PRIDE; Q24206; -.
EnsemblMetazoa; FBtr0070261; FBpp0070251; FBgn0283451. [Q24206-1]
EnsemblMetazoa; FBtr0070263; FBpp0070253; FBgn0283451. [Q24206-1]
EnsemblMetazoa; FBtr0300427; FBpp0289656; FBgn0283451. [Q24206-1]
EnsemblMetazoa; FBtr0300428; FBpp0289657; FBgn0283451. [Q24206-1]
EnsemblMetazoa; FBtr0330406; FBpp0303432; FBgn0283451.
EnsemblMetazoa; FBtr0332293; FBpp0304572; FBgn0283451. [Q24206-1]
GeneID; 44505; -.
KEGG; dme:Dmel_CG11491; -.
CTD; 103946; -.
FlyBase; FBgn0283451; br.
eggNOG; ENOG410IVCP; Eukaryota.
eggNOG; ENOG410YRXI; LUCA.
InParanoid; Q24206; -.
KO; K02174; -.
OMA; NIVKPCI; -.
SignaLink; Q24206; -.
ChiTaRS; br; fly.
GenomeRNAi; 44505; -.
Proteomes; UP000000803; Chromosome X.
Bgee; FBgn0000210; -.
ExpressionAtlas; Q24206; differential.
Genevisible; Q24206; DM.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0003677; F:DNA binding; IDA:FlyBase.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0006914; P:autophagy; IMP:FlyBase.
GO; GO:0008219; P:cell death; TAS:FlyBase.
GO; GO:0071390; P:cellular response to ecdysone; IMP:FlyBase.
GO; GO:0001752; P:compound eye photoreceptor fate commitment; IMP:FlyBase.
GO; GO:0048813; P:dendrite morphogenesis; IMP:FlyBase.
GO; GO:0035072; P:ecdysone-mediated induction of salivary gland cell autophagic cell death; NAS:FlyBase.
GO; GO:0007562; P:eclosion; IEP:FlyBase.
GO; GO:0042332; P:gravitaxis; IMP:FlyBase.
GO; GO:0048808; P:male genitalia morphogenesis; IMP:FlyBase.
GO; GO:0007552; P:metamorphosis; TAS:FlyBase.
GO; GO:0048747; P:muscle fiber development; IGI:FlyBase.
GO; GO:0010629; P:negative regulation of gene expression; IMP:FlyBase.
GO; GO:0048477; P:oogenesis; IMP:FlyBase.
GO; GO:0030707; P:ovarian follicle cell development; IMP:FlyBase.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IMP:FlyBase.
GO; GO:0007458; P:progression of morphogenetic furrow involved in compound eye morphogenesis; IMP:FlyBase.
GO; GO:0040034; P:regulation of development, heterochronic; IMP:FlyBase.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0035075; P:response to ecdysone; IMP:FlyBase.
GO; GO:0009608; P:response to symbiont; IMP:FlyBase.
GO; GO:0035070; P:salivary gland histolysis; IMP:FlyBase.
InterPro; IPR000210; BTB/POZ_dom.
InterPro; IPR011333; SKP1/BTB/POZ_sf.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
Pfam; PF00651; BTB; 1.
SMART; SM00225; BTB; 1.
SMART; SM00355; ZnF_C2H2; 2.
SUPFAM; SSF54695; SSF54695; 1.
SUPFAM; SSF57667; SSF57667; 1.
PROSITE; PS50097; BTB; 1.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 2.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 2.
1: Evidence at protein level;
Alternative splicing; Complete proteome; Developmental protein;
DNA-binding; Metal-binding; Nucleus; Reference proteome; Repeat; Zinc;
Zinc-finger.
CHAIN 1 880 Broad-complex core protein isoform 6.
/FTId=PRO_0000047070.
DOMAIN 32 97 BTB. {ECO:0000255|PROSITE-
ProRule:PRU00037}.
ZN_FING 710 733 C2H2-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 740 763 C2H2-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
COMPBIAS 203 207 Poly-Ala.
COMPBIAS 265 268 Poly-Asn.
COMPBIAS 458 466 Poly-Asn.
COMPBIAS 584 589 Poly-Pro.
COMPBIAS 618 621 Poly-Ala.
COMPBIAS 798 803 Poly-Ala.
COMPBIAS 821 833 Poly-Ala.
COMPBIAS 862 867 Poly-Gln.
CONFLICT 436 436 G -> D (in Ref. 1; AAB09760).
{ECO:0000305}.
CONFLICT 621 621 Missing (in Ref. 1). {ECO:0000305}.
CONFLICT 624 624 A -> R (in Ref. 1; AAB09760).
{ECO:0000305}.
CONFLICT 661 662 AV -> L (in Ref. 1). {ECO:0000305}.
CONFLICT 678 678 Missing (in Ref. 1). {ECO:0000305}.
CONFLICT 722 723 KL -> NV (in Ref. 1; AAB09760).
{ECO:0000305}.
SEQUENCE 880 AA; 92305 MW; 500C0A4A38663AAF CRC64;
MDDTQHFCLR WNNYQSSITS AFENLRDDEA FVDVTLACEG RSIKAHRVVL SACSPYFREL
LKSTPCKHPV ILLQDVNFMD LHALVEFIYH GEVNVHQKSL QSFLKTAEVL RVSGLTQQQA
EDTHSHLAQI QNLANSGGRT PLNTHTQSLP HPHHGSLHDD GGSSTLFSRQ GAGSPPPTAV
PSLPSHINNQ LLKRMAMMHR SSAAAAAEET SHAFKRLRGS DNSLPLSGAV GSGSNNNSPD
LPPLHARSAS PQQTPADFST IKHHNNNNTP PLKEEKRNGP TGNGNSGNGN GNGNGASNGN
GISISDKLGS LTPSPLARAG ADDVKSEPMD MVCSNNNANA NDEHSNDSTG EHDANRSSSG
DGGKGSLSSG NDEEIGDGLA SHHAAPQFIM SPAENKMFHA AAFNFPNIDP SALLGLNTQL
QQSGDLAVSP QGGSTGSLLS GVIVPGGSGG TPSNSSSNNN NNNSNNQQQK VEQQSSPHQL
LQQQHHSTPH TNSPQLKQEQ PKSGGGSCKS SDLHIAAGSE RSLSRSSQGM PDAGGHSATP
SPTAAYHKRE RERERERERE RERERERSLD HERDLERPGG TGSPPPPPPS HHSHFGQHPL
SLLPSHHQLH ATHHELSAAA AHHAHAHAHA AHAHALARAG SPMEHHHLLH HRRASLSPSG
AVSSASGAGG RGGGAGGPGG PGGSLLSSVR AQDVAQANRL LLPLPLNACH RCDVCGKLLS
TKLTLKRHKE QQHLQPLNNA VCNLCHKVFR TLNSLNNHKS IYHRRQKNHH SYFHHGAGVS
QAGSPGSRLH QSLSSLSAAA AAANNSVNVG GGSVGGAGGN AVAAAAAAAA AAAELLLSPI
VGAAAVAGGT ASSTLQLAAA HQQQQQQSSP GIVKPCMDFL


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