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C-C motif chemokine 13 (CK-beta-10) (Monocyte chemoattractant protein 4) (Monocyte chemotactic protein 4) (MCP-4) (NCC-1) (Small-inducible cytokine A13) [Cleaved into: C-C motif chemokine 13, long chain; C-C motif chemokine 13, medium chain; C-C motif chemokine 13, short chain]

 CCL13_HUMAN             Reviewed;          98 AA.
Q99616; O95689; Q6ICQ6;
15-JUL-1998, integrated into UniProtKB/Swiss-Prot.
01-MAY-1997, sequence version 1.
27-SEP-2017, entry version 162.
RecName: Full=C-C motif chemokine 13;
AltName: Full=CK-beta-10;
AltName: Full=Monocyte chemoattractant protein 4;
AltName: Full=Monocyte chemotactic protein 4;
Short=MCP-4;
AltName: Full=NCC-1;
AltName: Full=Small-inducible cytokine A13;
Contains:
RecName: Full=C-C motif chemokine 13, long chain;
Contains:
RecName: Full=C-C motif chemokine 13, medium chain;
Contains:
RecName: Full=C-C motif chemokine 13, short chain;
Flags: Precursor;
Name=CCL13; Synonyms=MCP4, NCC1, SCYA13;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Lung;
Power C.A., Meyer A., Rison S.C.G., Guye-Coulin F., Wells T.N.C.;
"Cloning and characterization of MCP-4, a novel CC chemokine related
to MCP-1 and eotaxin.";
Eur. Cytokine Netw. 7:513-513(1996).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Heart;
PubMed=8955214;
Garcia-Zepeda E.A., Combadiere C., Rothenberg M.E., Sarafi M.N.,
Lavigne F., Hamid Q., Murphy P.M., Luster A.D.;
"Human monocyte chemoattractant protein (MCP)-4 is a novel CC
chemokine with activities on monocytes, eosinophils, and basophils
induced in allergic and nonallergic inflammation that signals through
the CC chemokine receptors (CCR)-2 and -3.";
J. Immunol. 157:5613-5626(1996).
[3]
NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 17-98, PYROGLUTAMATE
FORMATION AT GLN-24, AND MASS SPECTROMETRY.
TISSUE=Fetus;
PubMed=8642349; DOI=10.1084/jem.183.5.2379;
Uguccioni M., Loetscher P., Forssmann U., Dewald B., Li H., Lima S.H.,
Li Y., Kreider B., Garotta G., Thelen M., Baggiolini M.;
"Monocyte chemotactic protein 4 (MCP-4), a novel structural and
functional analogue of MCP-3 and eotaxin.";
J. Exp. Med. 183:2379-2384(1996).
[4]
NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 22-33, AND
IDENTIFICATION BY MASS SPECTROMETRY.
TISSUE=Fetus;
PubMed=9195948; DOI=10.1074/jbc.272.26.16404;
Berkhout T.A., Sarau H.M., Moores K., White J.R., Elshourbagy N.,
Appelbaum E., Reape T.J., Brawner M., Makwana J., Foley J.J.,
Schmidt D.B., Imburgia C., Macnulty D., Matthews J., O'Donnell K.,
O'Shannessy D., Scott M., Groot P.H.E., Macphee C.;
"Cloning, in vitro expression, and functional characterization of a
novel human CC chemokine of the monocyte chemotactic protein (MCP)
family (MCP-4) that binds and signals through the CC chemokine
receptor 2B.";
J. Biol. Chem. 272:16404-16413(1997).
[5]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=9060459;
Godiska R., Chantry D., Raport C.J., Schweickart V.L., Trong H.L.,
Gray P.W.;
"Monocyte chemotactic protein-4: tissue-specific expression and
signaling through CC chemokine receptor-2.";
J. Leukoc. Biol. 61:353-360(1997).
[6]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Skin fibroblast;
PubMed=10049733; DOI=10.1006/bbrc.1999.0216;
Hein H., Schluter C., Kulke R., Christophers E., Schroeder J.-M.,
Bartels J.;
"Genomic organization, sequence analysis and transcriptional
regulation of the human MCP-4 chemokine gene (SCYA13) in dermal
fibroblasts: a comparison to other eosinophilic beta-chemokines.";
Biochem. Biophys. Res. Commun. 255:470-476(1999).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S.,
Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y.,
Phelan M., Farmer A.;
"Cloning of human full-length CDSs in BD Creator(TM) system donor
vector.";
Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases.
[8]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.;
"Cloning of human full open reading frames in Gateway(TM) system entry
vector (pDONR201).";
Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases.
[9]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=16625196; DOI=10.1038/nature04689;
Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R.,
Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A.,
Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J.,
Chang J.L., Chen C.-K., Cook A., Corum B., Cuomo C.A., de Jong P.J.,
DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R.,
Gnerre S., Goldstein S., Grafham D.V., Grocock R., Hafez N.,
Hagopian D.S., Hart E., Norman C.H., Humphray S., Jaffe D.B.,
Jones M., Kamal M., Khodiyar V.K., LaButti K., Laird G., Lehoczky J.,
Liu X., Lokyitsang T., Loveland J., Lui A., Macdonald P., Major J.E.,
Matthews L., Mauceli E., McCarroll S.A., Mihalev A.H., Mudge J.,
Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., Schwartz D.C.,
Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D.,
Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A.,
Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.;
"DNA sequence of human chromosome 17 and analysis of rearrangement in
the human lineage.";
Nature 440:1045-1049(2006).
[10]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[11]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Brain;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[12]
NUCLEOTIDE SEQUENCE [MRNA] OF 17-95.
TISSUE=Foreskin;
Bartels J.H., Schlueter C., Richter E., Noso N., Christophers E.,
Schroeder J.-M.;
"Expression of a MCP-4 like novel CC-chemokine in human dermal
fibroblasts: molecular cloning and RT-PCR analysis.";
Submitted (JUL-1996) to the EMBL/GenBank/DDBJ databases.
[13]
X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS) OF 24-98, AND DISULFIDE BONDS.
PubMed=18323622; DOI=10.1107/S0907444907066164;
Barinka C., Prahl A., Lubkowski J.;
"Structure of human monocyte chemoattractant protein 4 (MCP-
4/CCL13).";
Acta Crystallogr. D 64:273-278(2008).
-!- FUNCTION: Chemotactic factor that attracts monocytes, lymphocytes,
basophils and eosinophils, but not neutrophils. Signals through
CCR2B and CCR3 receptors. Plays a role in the accumulation of
leukocytes at both sides of allergic and non-allergic
inflammation. May be involved in the recruitment of monocytes into
the arterial wall during the disease process of atherosclerosis.
May play a role in the monocyte attraction in tissues chronically
exposed to exogenous pathogens.
-!- SUBCELLULAR LOCATION: Secreted.
-!- TISSUE SPECIFICITY: Widely expressed. Found in small intestine,
thymus, colon, lung, trachea, stomach and lymph node. Low levels
seen in the pulmonary artery smooth muscle cells.
-!- INDUCTION: By IL1/interleukin-1 and TNF.
-!- PTM: One major form (form long), and two minor forms (short chain
and medium chain) are produced by differential signal peptide
cleavage. The medium chain is about 30-fold less active than the
long chain.
-!- MASS SPECTROMETRY: Mass=9314; Mass_error=30; Method=MALDI;
Range=17-98; Evidence={ECO:0000269|PubMed:8642349};
-!- MASS SPECTROMETRY: Mass=8760; Mass_error=30; Method=MALDI;
Range=22-98; Evidence={ECO:0000269|PubMed:8642349};
-!- MASS SPECTROMETRY: Mass=8575; Mass_error=30; Method=MALDI;
Range=24-98; Evidence={ECO:0000269|PubMed:8642349};
-!- MISCELLANEOUS: This protein can bind heparin.
-!- SIMILARITY: Belongs to the intercrine beta (chemokine CC) family.
{ECO:0000305}.
-!- WEB RESOURCE: Name=Wikipedia; Note=CCL13 entry;
URL="https://en.wikipedia.org/wiki/CCL13";
-----------------------------------------------------------------------
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EMBL; U46767; AAB38703.1; -; mRNA.
EMBL; X98306; CAA66950.1; -; mRNA.
EMBL; U59808; AAD09362.1; -; mRNA.
EMBL; AJ001634; CAA04888.1; -; mRNA.
EMBL; BT007385; AAP36049.1; -; mRNA.
EMBL; AC002482; AAB67307.1; -; Genomic_DNA.
EMBL; CR450337; CAG29333.1; -; mRNA.
EMBL; CH471147; EAW80206.1; -; Genomic_DNA.
EMBL; BC008621; AAH08621.1; -; mRNA.
EMBL; Z77650; CAB01111.1; -; mRNA.
CCDS; CCDS11281.1; -.
RefSeq; NP_005399.1; NM_005408.2.
UniGene; Hs.414629; -.
PDB; 2RA4; X-ray; 1.70 A; A/B=24-98.
PDBsum; 2RA4; -.
ProteinModelPortal; Q99616; -.
SMR; Q99616; -.
BioGrid; 112260; 2.
DIP; DIP-5874N; -.
IntAct; Q99616; 1.
MINT; MINT-103367; -.
STRING; 9606.ENSP00000225844; -.
PhosphoSitePlus; Q99616; -.
BioMuta; CCL13; -.
DMDM; 3024128; -.
PaxDb; Q99616; -.
PRIDE; Q99616; -.
DNASU; 6357; -.
Ensembl; ENST00000225844; ENSP00000225844; ENSG00000181374.
GeneID; 6357; -.
KEGG; hsa:6357; -.
UCSC; uc002hic.3; human.
CTD; 6357; -.
DisGeNET; 6357; -.
EuPathDB; HostDB:ENSG00000181374.7; -.
GeneCards; CCL13; -.
HGNC; HGNC:10611; CCL13.
MIM; 601391; gene.
neXtProt; NX_Q99616; -.
OpenTargets; ENSG00000181374; -.
PharmGKB; PA35544; -.
eggNOG; ENOG410JEQZ; Eukaryota.
eggNOG; ENOG410YXJU; LUCA.
GeneTree; ENSGT00860000133690; -.
HOGENOM; HOG000036686; -.
InParanoid; Q99616; -.
KO; K16595; -.
OMA; STCCFIF; -.
OrthoDB; EOG091G14KV; -.
PhylomeDB; Q99616; -.
TreeFam; TF334888; -.
Reactome; R-HSA-380108; Chemokine receptors bind chemokines.
EvolutionaryTrace; Q99616; -.
GenomeRNAi; 6357; -.
PMAP-CutDB; Q99616; -.
PRO; PR:Q99616; -.
Proteomes; UP000005640; Chromosome 17.
Bgee; ENSG00000181374; -.
CleanEx; HS_CCL13; -.
ExpressionAtlas; Q99616; baseline and differential.
Genevisible; Q99616; HS.
GO; GO:0005623; C:cell; IEA:GOC.
GO; GO:0005576; C:extracellular region; TAS:Reactome.
GO; GO:0005615; C:extracellular space; IBA:GO_Central.
GO; GO:0048020; F:CCR chemokine receptor binding; IBA:GO_Central.
GO; GO:0008009; F:chemokine activity; IDA:UniProtKB.
GO; GO:0005102; F:receptor binding; TAS:ProtInc.
GO; GO:0061844; P:antimicrobial humoral immune response mediated by antimicrobial peptide; IDA:UniProtKB.
GO; GO:0007267; P:cell-cell signaling; TAS:ProtInc.
GO; GO:0006874; P:cellular calcium ion homeostasis; TAS:ProtInc.
GO; GO:0071346; P:cellular response to interferon-gamma; IBA:GO_Central.
GO; GO:0071347; P:cellular response to interleukin-1; IBA:GO_Central.
GO; GO:0071356; P:cellular response to tumor necrosis factor; IBA:GO_Central.
GO; GO:0070098; P:chemokine-mediated signaling pathway; IBA:GO_Central.
GO; GO:0006935; P:chemotaxis; TAS:ProtInc.
GO; GO:0007010; P:cytoskeleton organization; IDA:UniProtKB.
GO; GO:0048245; P:eosinophil chemotaxis; IDA:UniProtKB.
GO; GO:0007186; P:G-protein coupled receptor signaling pathway; IBA:GO_Central.
GO; GO:0006954; P:inflammatory response; IBA:GO_Central.
GO; GO:0031640; P:killing of cells of other organism; IDA:UniProtKB.
GO; GO:0048247; P:lymphocyte chemotaxis; IBA:GO_Central.
GO; GO:0002548; P:monocyte chemotaxis; IBA:GO_Central.
GO; GO:0030593; P:neutrophil chemotaxis; IBA:GO_Central.
GO; GO:0070374; P:positive regulation of ERK1 and ERK2 cascade; IBA:GO_Central.
GO; GO:0043547; P:positive regulation of GTPase activity; IBA:GO_Central.
GO; GO:0008360; P:regulation of cell shape; IDA:UniProtKB.
GO; GO:0007165; P:signal transduction; TAS:ProtInc.
InterPro; IPR000827; Chemokine_CC_CS.
InterPro; IPR001811; Chemokine_IL8-like_dom.
Pfam; PF00048; IL8; 1.
SMART; SM00199; SCY; 1.
SUPFAM; SSF54117; SSF54117; 1.
PROSITE; PS00472; SMALL_CYTOKINES_CC; 1.
1: Evidence at protein level;
3D-structure; Chemotaxis; Complete proteome; Cytokine;
Direct protein sequencing; Disulfide bond; Inflammatory response;
Polymorphism; Pyrrolidone carboxylic acid; Reference proteome;
Secreted; Signal.
SIGNAL 1 16 {ECO:0000269|PubMed:8642349}.
CHAIN 17 98 C-C motif chemokine 13, long chain.
/FTId=PRO_0000005201.
CHAIN 22 98 C-C motif chemokine 13, medium chain.
/FTId=PRO_0000005202.
CHAIN 24 98 C-C motif chemokine 13, short chain.
/FTId=PRO_0000005203.
MOD_RES 24 24 Pyrrolidone carboxylic acid; in short
chain. {ECO:0000269|PubMed:8642349}.
DISULFID 34 58 {ECO:0000269|PubMed:18323622}.
DISULFID 35 74 {ECO:0000269|PubMed:18323622}.
VARIANT 5 5 A -> S (in dbSNP:rs3136677).
/FTId=VAR_024169.
VARIANT 29 29 N -> S (in dbSNP:rs34566308).
/FTId=VAR_048706.
CONFLICT 93 98 AHTLKT -> LTP (in Ref. 12; CAB01111).
{ECO:0000305}.
STRAND 32 34 {ECO:0000244|PDB:2RA4}.
HELIX 45 47 {ECO:0000244|PDB:2RA4}.
STRAND 48 53 {ECO:0000244|PDB:2RA4}.
STRAND 58 60 {ECO:0000244|PDB:2RA4}.
STRAND 63 67 {ECO:0000244|PDB:2RA4}.
STRAND 72 75 {ECO:0000244|PDB:2RA4}.
HELIX 80 89 {ECO:0000244|PDB:2RA4}.
SEQUENCE 98 AA; 10986 MW; 612688DFCD308873 CRC64;
MKVSAVLLCL LLMTAAFNPQ GLAQPDALNV PSTCCFTFSS KKISLQRLKS YVITTSRCPQ
KAVIFRTKLG KEICADPKEK WVQNYMKHLG RKAHTLKT


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