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C-C motif chemokine 20 (Beta-chemokine exodus-1) (CC chemokine LARC) (Liver and activation-regulated chemokine) (Macrophage inflammatory protein 3 alpha) (MIP-3-alpha) (Small-inducible cytokine A20) [Cleaved into: CCL20(1-67); CCL20(1-64); CCL20(2-70)]

 CCL20_HUMAN             Reviewed;          96 AA.
P78556; Q53S51; Q99664;
01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
01-MAY-1997, sequence version 1.
25-OCT-2017, entry version 163.
RecName: Full=C-C motif chemokine 20;
AltName: Full=Beta-chemokine exodus-1;
AltName: Full=CC chemokine LARC;
AltName: Full=Liver and activation-regulated chemokine;
AltName: Full=Macrophage inflammatory protein 3 alpha;
Short=MIP-3-alpha;
AltName: Full=Small-inducible cytokine A20;
Contains:
RecName: Full=CCL20(1-67);
Contains:
RecName: Full=CCL20(1-64);
Contains:
RecName: Full=CCL20(2-70);
Flags: Precursor;
Name=CCL20; Synonyms=LARC, MIP3A, SCYA20;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), INDUCTION, AND TISSUE
SPECIFICITY.
PubMed=9013939;
Rossi D.L., Vicari A.P., Franz-Bacon K., McClanahan T.K., Zlotnik A.;
"Identification through bioinformatics of two new macrophage
proinflammatory human chemokines: MIP-3alpha and MIP-3beta.";
J. Immunol. 158:1033-1036(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), PROTEIN SEQUENCE OF
N-TERMINUS, TISSUE SPECIFICITY, AND FUNCTION.
TISSUE=Liver;
PubMed=9038201; DOI=10.1074/jbc.272.9.5846;
Hieshima K., Imai T., Opdenakker G., van Damme J., Kusuda J., Tei H.,
Sakaki Y., Takatsuki K., Miura R., Yoshie O., Nomiyama H.;
"Molecular cloning of a novel human CC chemokine liver and activation-
regulated chemokine (LARC) expressed in liver. Chemotactic activity
for lymphocytes and gene localization on chromosome 2.";
J. Biol. Chem. 272:5846-5853(1997).
[3]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), INDUCTION, FUNCTION, AND
TISSUE SPECIFICITY.
TISSUE=Pancreas;
PubMed=9129037;
Hromas R.A., Gray P.W., Chantry D., Godiska R., Krathwohl M., Fife K.,
Bell G.I., Takeda J., Aronica S., Gordon M., Cooper S.,
Broxmeyer H.E., Klemsz M.J.;
"Cloning and characterization of Exodus, a novel beta-chemokine.";
Blood 89:3315-3322(1997).
[4]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), FUNCTION, AND TISSUE
SPECIFICITY.
TISSUE=Liver;
PubMed=11352563; DOI=10.1006/geno.2001.6482;
Nelson R.T., Boyd J., Gladue R.P., Paradis T., Thomas R.,
Cunningham A.C., Lira P., Brissette W.H., Hayes L., Hames L.M.,
Neote K.S., McColl S.R.;
"Genomic organization of the CC chemokine mip-3alpha/CCL20/larc/
exodus/SCYA20, showing gene structure, splice variants, and chromosome
localization.";
Genomics 73:28-37(2001).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15815621; DOI=10.1038/nature03466;
Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H.,
Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M.,
Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E.,
Kremitzki C., Oddy L., Du H., Sun H., Bradshaw-Cordum H., Ali J.,
Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C.,
Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J.,
Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A.,
Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K.,
Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M.,
Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K.,
McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C.,
Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N.,
Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M.,
Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E.,
Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P.,
Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A.,
Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A.,
Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T.,
Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D.,
Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X.,
McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C.,
Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S.,
Miller W., Eichler E.E., Bork P., Suyama M., Torrents D.,
Waterston R.H., Wilson R.K.;
"Generation and annotation of the DNA sequences of human chromosomes 2
and 4.";
Nature 434:724-731(2005).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Liver;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[7]
IDENTIFICATION OF CCL20(1-67); CCL20(1-64) AND CCL20(2-70),
PROTEOLYTIC PROCESSING OF C-TERMINAL, SUBCELLULAR LOCATION, AND
FUNCTION.
PubMed=11035086; DOI=10.4049/jimmunol.165.8.4470;
Schutyser E., Struyf S., Menten P., Lenaerts J.-P., Conings R.,
Put W., Wuyts A., Proost P., Van Damme J.;
"Regulated production and molecular diversity of human liver and
activation-regulated chemokine/macrophage inflammatory protein-3 alpha
from normal and transformed cells.";
J. Immunol. 165:4470-4477(2000).
[8]
FUNCTION, AND BINDING TO CCR6.
PubMed=20068036; DOI=10.1074/jbc.M109.091090;
Roehrl J., Yang D., Oppenheim J.J., Hehlgans T.;
"Specific binding and chemotactic activity of mBD4 and its functional
orthologue hBD2 to CCR6-expressing cells.";
J. Biol. Chem. 285:7028-7034(2010).
[9]
REVIEW, AND FUNCTION.
PubMed=21376174; DOI=10.1016/j.yexcr.2010.12.018;
Ito T., Carson W.F. IV, Cavassani K.A., Connett J.M., Kunkel S.L.;
"CCR6 as a mediator of immunity in the lung and gut.";
Exp. Cell Res. 317:613-619(2011).
[10]
FUNCTION, AND TISSUE SPECIFICITY.
PubMed=23765988; DOI=10.1002/jcp.24418;
Caballero-Campo P., Buffone M.G., Benencia F., Conejo-Garcia J.R.,
Rinaudo P.F., Gerton G.L.;
"A role for the chemokine receptor CCR6 in mammalian sperm motility
and chemotaxis.";
J. Cell. Physiol. 229:68-78(2014).
[11]
FUNCTION.
PubMed=25122636; DOI=10.1126/scitranslmed.3009071;
Diao R., Fok K.L., Chen H., Yu M.K., Duan Y., Chung C.M., Li Z.,
Wu H., Li Z., Zhang H., Ji Z., Zhen W., Ng C.F., Gui Y., Cai Z.,
Chan H.C.;
"Deficient human beta-defensin 1 underlies male infertility associated
with poor sperm motility and genital tract infection.";
Sci. Transl. Med. 6:249RA108-249RA108(2014).
[12]
X-RAY CRYSTALLOGRAPHY (1.7 ANGSTROMS) OF 27-96, AND FUNCTION AS AN
ANTIMICROBIAL PROTEIN.
PubMed=12149255; DOI=10.1074/jbc.M203907200;
Hoover D.M., Boulegue C., Yang D., Oppenheim J.J., Tucker K., Lu W.,
Lubkowski J.;
"The structure of human macrophage inflammatory protein-3alpha /CCL20.
Linking antimicrobial and CC chemokine receptor-6-binding activities
with human beta-defensins.";
J. Biol. Chem. 277:37647-37654(2002).
-!- FUNCTION: Acts as a ligand for C-C chemokine receptor CCR6.
Signals through binding and activation of CCR6 and induces a
strong chemotactic response and mobilization of intracellular
calcium ions (PubMed:11352563, PubMed:11035086, PubMed:20068036).
The ligand-receptor pair CCL20-CCR6 is responsible for the
chemotaxis of dendritic cells (DC), effector/memory T-cells and B-
cells and plays an important role at skin and mucosal surfaces
under homeostatic and inflammatory conditions, as well as in
pathology, including cancer and various autoimmune diseases
(PubMed:21376174). CCL20 acts as a chemotactic factor that
attracts lymphocytes and, slightly, neutrophils, but not monocytes
(PubMed:9038201, PubMed:11352563). Involved in the recruitment of
both the proinflammatory IL17 producing helper T-cells (Th17) and
the regulatory T-cells (Treg) to sites of inflammation. Required
for optimal migration of thymic natural regulatory T cells
(nTregs) and DN1 early thymocyte progenitor cells (By similarity).
C-terminal processed forms have been shown to be equally
chemotactically active for leukocytes (PubMed:11035086).
Positively regulates sperm motility and chemotaxis via its binding
to CCR6 which triggers Ca2+ mobilization in the sperm which is
important for its motility (PubMed:23765988, PubMed:25122636).
Inhibits proliferation of myeloid progenitors in colony formation
assays (PubMed:9129037). May be involved in formation and function
of the mucosal lymphoid tissues by attracting lymphocytes and
dendritic cells towards epithelial cells (By similarity).
Possesses antibacterial activity towards E.coli ATCC 25922 and
S.aureus ATCC 29213 (PubMed:12149255).
{ECO:0000250|UniProtKB:O89093, ECO:0000269|PubMed:11035086,
ECO:0000269|PubMed:11352563, ECO:0000269|PubMed:12149255,
ECO:0000269|PubMed:20068036, ECO:0000269|PubMed:23765988,
ECO:0000269|PubMed:25122636, ECO:0000269|PubMed:9038201,
ECO:0000269|PubMed:9129037, ECO:0000303|PubMed:21376174}.
-!- INTERACTION:
Q15311:RALBP1; NbExp=2; IntAct=EBI-3913209, EBI-749285;
-!- SUBCELLULAR LOCATION: Secreted {ECO:0000269|PubMed:11035086}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=P78556-1; Sequence=Displayed;
Name=2;
IsoId=P78556-2; Sequence=VSP_001061;
-!- TISSUE SPECIFICITY: Expressed in the seminal plasma, endometrial
fluid and follicular fluid (at protein level). Expressed
predominantly in the liver, lymph nodes, appendix, peripheral
blood lymphocytes, and fetal lung. Low levels seen in thymus,
prostate, testis, small intestine and colon.
{ECO:0000269|PubMed:11352563, ECO:0000269|PubMed:23765988,
ECO:0000269|PubMed:9013939, ECO:0000269|PubMed:9038201,
ECO:0000269|PubMed:9129037}.
-!- INDUCTION: By bacterial lipopolysaccharides (LPS), TNF and
IFNG/IFN-gamma. Induced by phorbol myristate acetate (PMA) in U-
937 cell line and bowes melanoma. Repressed by IL10/interleukin-
10. {ECO:0000269|PubMed:9013939, ECO:0000269|PubMed:9038201,
ECO:0000269|PubMed:9129037}.
-!- PTM: C-terminal processed forms which lack 1, 3 or 6 amino acids
are produced by proteolytic cleavage after secretion from
peripheral blood monocytes. {ECO:0000269|PubMed:11035086}.
-!- SIMILARITY: Belongs to the intercrine beta (chemokine CC) family.
{ECO:0000305}.
-!- WEB RESOURCE: Name=Wikipedia; Note=CCL20 entry;
URL="https://en.wikipedia.org/wiki/CCL20";
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EMBL; U77035; AAC50943.1; -; mRNA.
EMBL; D86955; BAA13191.1; -; mRNA.
EMBL; U64197; AAB61534.1; -; mRNA.
EMBL; AC073065; AAX93214.1; -; Genomic_DNA.
EMBL; BC020698; AAH20698.1; -; mRNA.
CCDS; CCDS2469.1; -. [P78556-1]
CCDS; CCDS46536.1; -. [P78556-2]
RefSeq; NP_001123518.1; NM_001130046.1. [P78556-2]
RefSeq; NP_004582.1; NM_004591.2. [P78556-1]
UniGene; Hs.75498; -.
PDB; 1M8A; X-ray; 1.70 A; A/B=27-96.
PDB; 2HCI; X-ray; 1.81 A; A/B=27-95.
PDB; 2JYO; NMR; -; A=27-96.
PDBsum; 1M8A; -.
PDBsum; 2HCI; -.
PDBsum; 2JYO; -.
ProteinModelPortal; P78556; -.
SMR; P78556; -.
BioGrid; 112267; 3.
DIP; DIP-5864N; -.
IntAct; P78556; 5.
MINT; MINT-1525084; -.
STRING; 9606.ENSP00000351671; -.
BioMuta; CCL20; -.
DMDM; 2829668; -.
PaxDb; P78556; -.
PeptideAtlas; P78556; -.
PRIDE; P78556; -.
DNASU; 6364; -.
Ensembl; ENST00000358813; ENSP00000351671; ENSG00000115009. [P78556-1]
Ensembl; ENST00000409189; ENSP00000386273; ENSG00000115009. [P78556-2]
GeneID; 6364; -.
KEGG; hsa:6364; -.
UCSC; uc002vpl.3; human. [P78556-1]
CTD; 6364; -.
DisGeNET; 6364; -.
EuPathDB; HostDB:ENSG00000115009.11; -.
GeneCards; CCL20; -.
HGNC; HGNC:10619; CCL20.
MIM; 601960; gene.
neXtProt; NX_P78556; -.
OpenTargets; ENSG00000115009; -.
PharmGKB; PA35551; -.
eggNOG; ENOG410J2BK; Eukaryota.
eggNOG; ENOG410ZGME; LUCA.
GeneTree; ENSGT00530000064223; -.
HOGENOM; HOG000036685; -.
HOVERGEN; HBG017871; -.
InParanoid; P78556; -.
KO; K14625; -.
OMA; CCLRYTE; -.
OrthoDB; EOG091G168B; -.
PhylomeDB; P78556; -.
TreeFam; TF334888; -.
Reactome; R-HSA-380108; Chemokine receptors bind chemokines.
Reactome; R-HSA-418594; G alpha (i) signalling events.
Reactome; R-HSA-6783783; Interleukin-10 signaling.
SIGNOR; P78556; -.
EvolutionaryTrace; P78556; -.
GeneWiki; CCL20; -.
GenomeRNAi; 6364; -.
PMAP-CutDB; P78556; -.
PRO; PR:P78556; -.
Proteomes; UP000005640; Chromosome 2.
Bgee; ENSG00000115009; -.
CleanEx; HS_CCL20; -.
Genevisible; P78556; HS.
GO; GO:0005576; C:extracellular region; TAS:Reactome.
GO; GO:0005615; C:extracellular space; IBA:GO_Central.
GO; GO:0005622; C:intracellular; IEA:GOC.
GO; GO:0031731; F:CCR6 chemokine receptor binding; IDA:UniProtKB.
GO; GO:0008009; F:chemokine activity; IBA:GO_Central.
GO; GO:0061844; P:antimicrobial humoral immune response mediated by antimicrobial peptide; IDA:UniProtKB.
GO; GO:0035584; P:calcium-mediated signaling using intracellular calcium source; IDA:UniProtKB.
GO; GO:0060326; P:cell chemotaxis; IDA:UniProtKB.
GO; GO:0007267; P:cell-cell signaling; TAS:ProtInc.
GO; GO:0071346; P:cellular response to interferon-gamma; IBA:GO_Central.
GO; GO:0071347; P:cellular response to interleukin-1; IBA:GO_Central.
GO; GO:0071222; P:cellular response to lipopolysaccharide; IEA:Ensembl.
GO; GO:0071223; P:cellular response to lipoteichoic acid; IEA:Ensembl.
GO; GO:0071356; P:cellular response to tumor necrosis factor; IBA:GO_Central.
GO; GO:0070098; P:chemokine-mediated signaling pathway; IBA:GO_Central.
GO; GO:0006935; P:chemotaxis; IDA:UniProtKB.
GO; GO:0042742; P:defense response to bacterium; IEA:UniProtKB-KW.
GO; GO:0007186; P:G-protein coupled receptor signaling pathway; IBA:GO_Central.
GO; GO:0006955; P:immune response; TAS:ProtInc.
GO; GO:0006954; P:inflammatory response; IBA:GO_Central.
GO; GO:0031640; P:killing of cells of other organism; IDA:UniProtKB.
GO; GO:0048247; P:lymphocyte chemotaxis; IBA:GO_Central.
GO; GO:0002548; P:monocyte chemotaxis; IBA:GO_Central.
GO; GO:0030593; P:neutrophil chemotaxis; IBA:GO_Central.
GO; GO:0070374; P:positive regulation of ERK1 and ERK2 cascade; IBA:GO_Central.
GO; GO:0043547; P:positive regulation of GTPase activity; IBA:GO_Central.
GO; GO:0050726; P:positive regulation of interleukin-1 alpha biosynthetic process; IEA:Ensembl.
GO; GO:0051770; P:positive regulation of nitric-oxide synthase biosynthetic process; IEA:Ensembl.
GO; GO:2000406; P:positive regulation of T cell migration; IDA:MGI.
GO; GO:0007165; P:signal transduction; TAS:ProtInc.
GO; GO:0072678; P:T cell migration; ISS:UniProtKB.
GO; GO:0072679; P:thymocyte migration; ISS:UniProtKB.
GO; GO:0042060; P:wound healing; IEA:Ensembl.
CDD; cd01119; Chemokine_CC_DCCL; 1.
InterPro; IPR000827; Chemokine_CC_CS.
InterPro; IPR034133; Chemokine_CC_DCCL.
InterPro; IPR001811; Chemokine_IL8-like_dom.
InterPro; IPR036048; Interleukin_8-like_sf.
Pfam; PF00048; IL8; 1.
SMART; SM00199; SCY; 1.
SUPFAM; SSF54117; SSF54117; 1.
PROSITE; PS00472; SMALL_CYTOKINES_CC; 1.
1: Evidence at protein level;
3D-structure; Alternative splicing; Antibiotic; Antimicrobial;
Chemotaxis; Complete proteome; Cytokine; Direct protein sequencing;
Disulfide bond; Inflammatory response; Polymorphism;
Reference proteome; Secreted; Signal.
SIGNAL 1 26 {ECO:0000269|PubMed:9038201}.
CHAIN 27 96 C-C motif chemokine 20.
/FTId=PRO_0000005217.
CHAIN 27 93 CCL20(1-67).
/FTId=PRO_0000041854.
CHAIN 27 90 CCL20(1-64).
/FTId=PRO_0000041855.
CHAIN 28 96 CCL20(2-70).
/FTId=PRO_0000041856.
DISULFID 32 58
DISULFID 33 74
VAR_SEQ 26 26 Missing (in isoform 2).
{ECO:0000303|PubMed:11352563,
ECO:0000303|PubMed:15489334,
ECO:0000303|PubMed:9129037}.
/FTId=VSP_001061.
VARIANT 47 47 V -> M (in dbSNP:rs1049617).
/FTId=VAR_011915.
HELIX 43 45 {ECO:0000244|PDB:1M8A}.
STRAND 46 52 {ECO:0000244|PDB:1M8A}.
TURN 54 57 {ECO:0000244|PDB:1M8A}.
STRAND 58 60 {ECO:0000244|PDB:1M8A}.
STRAND 62 67 {ECO:0000244|PDB:1M8A}.
STRAND 72 75 {ECO:0000244|PDB:1M8A}.
HELIX 80 89 {ECO:0000244|PDB:1M8A}.
SEQUENCE 96 AA; 10762 MW; 1ED19EC2E1AC70AD CRC64;
MCCTKSLLLA ALMSVLLLHL CGESEAASNF DCCLGYTDRI LHPKFIVGFT RQLANEGCDI
NAIIFHTKKK LSVCANPKQT WVKYIVRLLS KKVKNM


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18-783-78923 RABBIT ANTI HUMAN MIP-3 BETA Biotin - CCL19; Small-inducible cytokine A19; Macrophage inflammatory protein 3 beta; MIP-3-beta; EBI1-ligand chemokine; ELC; Beta chemokine exodus-3; CK beta-11 Polyclona 0.05 mg
E1575h ELISA 6Ckine,Beta-chemokine exodus-2,C-C motif chemokine 21,CCL21,Homo sapiens,Human,SCYA21,Secondary lymphoid-tissue chemokine,SLC,Small-inducible cytokine A21,UNQ784_PRO1600 96T
E1575h ELISA kit 6Ckine,Beta-chemokine exodus-2,C-C motif chemokine 21,CCL21,Homo sapiens,Human,SCYA21,Secondary lymphoid-tissue chemokine,SLC,Small-inducible cytokine A21,UNQ784_PRO1600 96T
U1575h CLIA 6Ckine,Beta-chemokine exodus-2,C-C motif chemokine 21,CCL21,Homo sapiens,Human,SCYA21,Secondary lymphoid-tissue chemokine,SLC,Small-inducible cytokine A21,UNQ784_PRO1600 96T
E1651h ELISA CC chemokine ILC,C-C motif chemokine 27,CCL27,CTACK,Cutaneous T-cell-attracting chemokine,ESkine,Homo sapiens,Human,IL-11 R-alpha-locus chemokine,ILC,SCYA27,Skinkine,Small-inducible cytokine A27 96T


 

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