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C4-dicarboxylate transport transcriptional regulatory protein DctD (Type III transcriptional regulator HrpS)

 A0A0K8M4Q1_PSESF        Unreviewed;       302 AA.
A0A0K8M4Q1;
11-NOV-2015, integrated into UniProtKB/TrEMBL.
11-NOV-2015, sequence version 1.
22-NOV-2017, entry version 16.
SubName: Full=C4-dicarboxylate transport transcriptional regulatory protein DctD {ECO:0000313|EMBL:OSO24085.1};
SubName: Full=Type III transcriptional regulator HrpS {ECO:0000313|EMBL:GAO95203.1};
Name=dctD_1 {ECO:0000313|EMBL:OSR76860.1};
Synonyms=dctD_2 {ECO:0000313|EMBL:OSO24085.1},
dctD_3 {ECO:0000313|EMBL:OSR93167.1},
dctD_4 {ECO:0000313|EMBL:OSR38378.1};
ORFNames=BV319_01150 {ECO:0000313|EMBL:OSO79846.1},
BV320_02705 {ECO:0000313|EMBL:OSR38378.1},
BV321_01163 {ECO:0000313|EMBL:OSR44220.1},
BV322_01153 {ECO:0000313|EMBL:OSR45470.1},
BV323_04149 {ECO:0000313|EMBL:OSR50346.1},
BV324_04111 {ECO:0000313|EMBL:OSR52026.1},
BV325_00420 {ECO:0000313|EMBL:OSR63847.1},
BV326_00150 {ECO:0000313|EMBL:OSR76860.1},
BV328_00362 {ECO:0000313|EMBL:OSR81218.1},
BV329_00966 {ECO:0000313|EMBL:OSR89017.1},
BV330_01747 {ECO:0000313|EMBL:OSR93167.1},
BV331_01107 {ECO:0000313|EMBL:OSR97401.1},
BV332_01049 {ECO:0000313|EMBL:OSS06009.1},
BV333_01009 {ECO:0000313|EMBL:OSS10178.1},
BV334_01180 {ECO:0000313|EMBL:OSS14503.1},
BV335_01181 {ECO:0000313|EMBL:OSS20798.1},
BV336_01023 {ECO:0000313|EMBL:OSS26393.1},
BV337_01257 {ECO:0000313|EMBL:OSS31665.1},
BV338_01231 {ECO:0000313|EMBL:OSS36205.1},
BV361_01379 {ECO:0000313|EMBL:OSO24085.1},
PSA5_20820 {ECO:0000313|EMBL:GAO95203.1};
Pseudomonas syringae pv. actinidiae.
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.
NCBI_TaxID=103796 {ECO:0000313|EMBL:GAO95203.1, ECO:0000313|Proteomes:UP000036733};
[1] {ECO:0000313|EMBL:GAO95203.1, ECO:0000313|Proteomes:UP000036733}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=MAFF 212056 {ECO:0000313|EMBL:GAO95203.1,
ECO:0000313|Proteomes:UP000036733};
Sawada H., Miyoshi T., Ide Y.;
"Novel MLSA group (Psa5) of Pseudomonas syringae pv. actinidiae
causing bacterial canker of kiwifruit (Actinidia chinensis) in
Japan.";
J. Gen. Plant Pathol. 80:171-184(2014).
[2] {ECO:0000313|EMBL:GAO95203.1}
NUCLEOTIDE SEQUENCE.
STRAIN=MAFF 212056 {ECO:0000313|EMBL:GAO95203.1};
PubMed=26891997; DOI=10.1038/srep21399;
Fujikawa T., Sawada H.;
"Genome analysis of the kiwifruit canker pathogen Pseudomonas syringae
pv. actinidiae biovar 5.";
Sci. Rep. 6:21399-21399(2016).
[3] {ECO:0000313|EMBL:OSO24085.1, ECO:0000313|Proteomes:UP000193723}
NUCLEOTIDE SEQUENCE.
STRAIN=C10 {ECO:0000313|EMBL:OSR38378.1},
C11 {ECO:0000313|EMBL:OSR44220.1}, C12 {ECO:0000313|EMBL:OSR45470.1},
C13 {ECO:0000313|EMBL:OSR50346.1}, C14 {ECO:0000313|EMBL:OSR52026.1},
C15 {ECO:0000313|EMBL:OSR63847.1}, C16 {ECO:0000313|EMBL:OSR76860.1},
C18 {ECO:0000313|EMBL:OSR81218.1}, C24 {ECO:0000313|EMBL:OSR89017.1},
C26 {ECO:0000313|EMBL:OSR93167.1}, C27 {ECO:0000313|EMBL:OSR97401.1},
C28 {ECO:0000313|EMBL:OSS06009.1}, C29 {ECO:0000313|EMBL:OSS10178.1},
C3 {ECO:0000313|EMBL:OSO79846.1}, C30 {ECO:0000313|EMBL:OSS14503.1},
C31 {ECO:0000313|EMBL:OSS20798.1}, C48 {ECO:0000313|EMBL:OSS26393.1},
C54 {ECO:0000313|EMBL:OSS31665.1}, C62 {ECO:0000313|EMBL:OSS36205.1},
and NZ45 {ECO:0000313|EMBL:OSO24085.1,
ECO:0000313|Proteomes:UP000193723};
PubMed=28369338; DOI=.1093/gbe/evx055;
McCann H.C., Li L., Liu Y., Li D., Pan H., Zhong C., Rikkerink E.H.A.,
Templeton M.D., Straub C., Colombi E., Rainey P.B., Huang H.;
"Origin and Evolution of the Kiwifruit Canker Pandemic.";
Genome Biol. Evol. 9:932-944(2017).
[4] {ECO:0000313|EMBL:OSO24085.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C10 {ECO:0000313|EMBL:OSR38378.1},
C11 {ECO:0000313|EMBL:OSR44220.1}, C12 {ECO:0000313|EMBL:OSR45470.1},
C13 {ECO:0000313|EMBL:OSR50346.1}, C14 {ECO:0000313|EMBL:OSR52026.1},
C15 {ECO:0000313|EMBL:OSR63847.1}, C16 {ECO:0000313|EMBL:OSR76860.1},
C18 {ECO:0000313|EMBL:OSR81218.1}, C24 {ECO:0000313|EMBL:OSR89017.1},
C26 {ECO:0000313|EMBL:OSR93167.1}, C27 {ECO:0000313|EMBL:OSR97401.1},
C28 {ECO:0000313|EMBL:OSS06009.1}, C29 {ECO:0000313|EMBL:OSS10178.1},
C3 {ECO:0000313|EMBL:OSO79846.1}, C30 {ECO:0000313|EMBL:OSS14503.1},
C31 {ECO:0000313|EMBL:OSS20798.1}, C48 {ECO:0000313|EMBL:OSS26393.1},
C54 {ECO:0000313|EMBL:OSS31665.1}, C62 {ECO:0000313|EMBL:OSS36205.1},
and NZ45 {ECO:0000313|EMBL:OSO24085.1};
Mah S.A., Swanson W.J., Moy G.W., Vacquier V.D.;
Submitted (JAN-2017) to the EMBL/GenBank/DDBJ databases.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:GAO95203.1}.
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EMBL; BBWG01000138; GAO95203.1; -; Genomic_DNA.
EMBL; MTZF01000001; OSO24085.1; -; Genomic_DNA.
EMBL; MTCQ01000012; OSO79846.1; -; Genomic_DNA.
EMBL; MTHJ01000039; OSR38378.1; -; Genomic_DNA.
EMBL; MTHK01000009; OSR44220.1; -; Genomic_DNA.
EMBL; MTHL01000009; OSR45470.1; -; Genomic_DNA.
EMBL; MTHM01000083; OSR50346.1; -; Genomic_DNA.
EMBL; MTHN01000082; OSR52026.1; -; Genomic_DNA.
EMBL; MTHO01000003; OSR63847.1; -; Genomic_DNA.
EMBL; MTHP01000001; OSR76860.1; -; Genomic_DNA.
EMBL; MTHR01000003; OSR81218.1; -; Genomic_DNA.
EMBL; MTHS01000010; OSR89017.1; -; Genomic_DNA.
EMBL; MTHT01000020; OSR93167.1; -; Genomic_DNA.
EMBL; MTHU01000011; OSR97401.1; -; Genomic_DNA.
EMBL; MTHV01000009; OSS06009.1; -; Genomic_DNA.
EMBL; MTHW01000011; OSS10178.1; -; Genomic_DNA.
EMBL; MTHX01000013; OSS14503.1; -; Genomic_DNA.
EMBL; MTHY01000013; OSS20798.1; -; Genomic_DNA.
EMBL; MTHZ01000011; OSS26393.1; -; Genomic_DNA.
EMBL; MTIA01000013; OSS31665.1; -; Genomic_DNA.
EMBL; MTIB01000013; OSS36205.1; -; Genomic_DNA.
RefSeq; WP_003375736.1; NZ_MTZL01000013.1.
EnsemblBacteria; GAO95203; GAO95203; PSA5_20820.
Proteomes; UP000036733; Unassembled WGS sequence.
Proteomes; UP000193723; Unassembled WGS sequence.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
InterPro; IPR003593; AAA+_ATPase.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR002197; HTH_Fis.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR002078; Sigma_54_int.
InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
InterPro; IPR025944; Sigma_54_int_dom_CS.
Pfam; PF02954; HTH_8; 1.
Pfam; PF00158; Sigma54_activat; 1.
SMART; SM00382; AAA; 1.
SUPFAM; SSF46689; SSF46689; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
4: Predicted;
ATP-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
ECO:0000256|SAAS:SAAS00110192};
Complete proteome {ECO:0000313|Proteomes:UP000036733,
ECO:0000313|Proteomes:UP000193723};
DNA-binding {ECO:0000256|SAAS:SAAS00814512};
Nucleotide-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
ECO:0000256|SAAS:SAAS00110192};
Transcription {ECO:0000256|PROSITE-ProRule:PRU00193,
ECO:0000256|SAAS:SAAS00814754};
Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00193,
ECO:0000256|SAAS:SAAS00814754}.
DOMAIN 23 237 Sigma-54 factor interaction.
{ECO:0000259|PROSITE:PS50045}.
NP_BIND 37 44 ATP. {ECO:0000256|PROSITE-
ProRule:PRU00193}.
NP_BIND 99 108 ATP. {ECO:0000256|PROSITE-
ProRule:PRU00193}.
SEQUENCE 302 AA; 33205 MW; DF1F77693EF9E267 CRC64;
MSLDERFEDD LDEERVPNLG IVAESISQLG IDVLLSGETG TGKDTIARRI HEMSGRKGRL
VAMNCAAIPE SLAESELFGV VSGAYTGADR SRVGYVEAAQ GGTLYLDEID SMPLSLQAKL
LRVLETRALE RLGSTSTIKL DICVIASAQC SLDDAVERGQ FRRDLYFRLN VLTLKLPPLR
TQSDRIVPLF TRFTAAAAGE LGVAVPEACP LLHKVLLGHD WPGNIRELKA AAKRHVLGFP
LLGAEPPGEE HLACGLKSQL RVIEKALIQE SLKRHDNCVD SVSLELDMPR RTLYRRIKEL
QI


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