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CCCTC-binding factor, isoform CRA_a (Transcriptional repressor CTCF)

 A0A0H2UHP0_RAT          Unreviewed;       738 AA.
A0A0H2UHP0;
16-SEP-2015, integrated into UniProtKB/TrEMBL.
16-SEP-2015, sequence version 1.
25-OCT-2017, entry version 14.
SubName: Full=CCCTC-binding factor, isoform CRA_a {ECO:0000313|EMBL:EDL92388.1};
SubName: Full=Transcriptional repressor CTCF {ECO:0000313|Ensembl:ENSRNOP00000023851};
Name=Ctcf {ECO:0000313|EMBL:EDL92388.1,
ECO:0000313|Ensembl:ENSRNOP00000023851, ECO:0000313|RGD:621344};
ORFNames=rCG_51518 {ECO:0000313|EMBL:EDL92388.1};
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000023851, ECO:0000313|Proteomes:UP000002494};
[1] {ECO:0000313|Ensembl:ENSRNOP00000023851, ECO:0000313|Proteomes:UP000002494}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000023851,
ECO:0000313|Proteomes:UP000002494};
PubMed=15057822; DOI=10.1038/nature02426;
Rat Genome Sequencing Project Consortium;
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
Collins F.S.;
"Genome sequence of the Brown Norway rat yields insights into
mammalian evolution.";
Nature 428:493-521(2004).
[2] {ECO:0000313|EMBL:EDL92388.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDL92388.1};
PubMed=15632090; DOI=10.1101/gr.2889405;
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M.,
Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z.,
Istrail S., Li P., Sutton G.;
"Gene and alternative splicing annotation with AIR.";
Genome Res. 15:54-66(2005).
[3] {ECO:0000313|EMBL:EDL92388.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDL92388.1};
Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H.,
Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M.,
Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L.,
Lu F., Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C.,
Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|Ensembl:ENSRNOP00000023851}
IDENTIFICATION.
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000023851};
Ensembl;
Submitted (JUN-2015) to UniProtKB.
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EMBL; AABR07043747; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AABR07043748; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AABR07072643; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH473972; EDL92388.1; -; Genomic_DNA.
EMBL; CH473972; EDL92389.1; -; Genomic_DNA.
RefSeq; XP_006255598.1; XM_006255536.2.
UniGene; Rn.18612; -.
Ensembl; ENSRNOT00000023853; ENSRNOP00000023851; ENSRNOG00000017674.
GeneID; 83726; -.
CTD; 10664; -.
RGD; 621344; Ctcf.
GeneTree; ENSGT00890000139371; -.
OMA; EGEPMIC; -.
Proteomes; UP000002494; Chromosome 19.
Bgee; ENSRNOG00000017674; -.
GO; GO:0000775; C:chromosome, centromeric region; IEA:Ensembl.
GO; GO:0000793; C:condensed chromosome; IEA:Ensembl.
GO; GO:0005730; C:nucleolus; IEA:Ensembl.
GO; GO:0005654; C:nucleoplasm; IEA:Ensembl.
GO; GO:0043035; F:chromatin insulator sequence binding; IEA:Ensembl.
GO; GO:0000978; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding; IEA:Ensembl.
GO; GO:0001228; F:transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding; IEA:Ensembl.
GO; GO:0001078; F:transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding; IEA:Ensembl.
GO; GO:0006306; P:DNA methylation; IEA:Ensembl.
GO; GO:0010216; P:maintenance of DNA methylation; IEA:Ensembl.
GO; GO:0016584; P:nucleosome positioning; IEA:Ensembl.
GO; GO:0071459; P:protein localization to chromosome, centromeric region; IEA:Ensembl.
GO; GO:0006349; P:regulation of gene expression by genetic imprinting; IEA:Ensembl.
GO; GO:0035065; P:regulation of histone acetylation; IEA:Ensembl.
GO; GO:0031060; P:regulation of histone methylation; IEA:Ensembl.
GO; GO:0040030; P:regulation of molecular function, epigenetic; IEA:Ensembl.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
SMART; SM00355; ZnF_C2H2; 11.
SUPFAM; SSF57667; SSF57667; 7.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 8.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 11.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000002494};
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00042};
Proteomics identification {ECO:0000213|PeptideAtlas:A0A0H2UHP0};
Reference proteome {ECO:0000313|Proteomes:UP000002494};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00042};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00042}.
DOMAIN 266 293 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 294 321 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 322 350 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 351 378 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 379 406 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 407 435 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 437 465 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 467 494 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 495 522 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 523 546 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 555 573 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
SEQUENCE 738 AA; 84009 MW; CBAC9461FDE6E343 CRC64;
MEGEAVEAIV EESETFIKGK ERKTYQRRRE GGQEEDACHL PQNQTDGGEV VQDVNSSVQM
VMMEQLDPTL LQMKTEVMEG TVAPEAEAAV DDTQIITLQV VNMEEQPINI GELQLVQVPV
PVTVPVATTS VEELQGAYEN EVSKEGLAES EPMICHTLPL PEGFQVVKVG ANGEVETLEQ
GELPPQEDPS WQKDPDYQPP AKKTKKTKKS KLRYTEEGKD VDVSVYDFEE EQQEGLLSEV
NAEKVVGNMK PPKPTKIKKK GVKKTFQCEL CSYTCPRRSN LDRHMKSHTD ERPHKCHLCG
RAFRTVTLLR NHLNTHTGTR PHKCPDCDMA FVTSGELVRH RRYKHTHEKP FKCSMCDYAS
VEVSKLKRHI RSHTGERPFQ CSLCSYASRD TYKLKRHMRT HSGEKPYECY ICHARFTQSG
TMKMHILQKH TENVAKFHCP HCDTVIARKS DLGVHLRKQH SYIEQGKKCR YCDAVFHERY
ALIQHQKSHK NEKRFKCDQC DYACRQERHM IMHKRTHTGE KPYACSHCDK TFRQKQLLDM
HFKRYHDPNF VPAAFVCSKC GKTFTRRNTM ARHADNCAGP DGVEGENGGE TKKSKRGRKR
KMRSKKEDSS DSEENAEPDL DDNEEEEEPA VEIEPEPEPQ PQPQPQPQPQ PVAPAPPPAK
KRRGRPPGRT NQPKQNQPTA IIQVEDQNTG AIENIIVEVK KEPDAEPAEG EEEEAQAAPA
DAPNGDLTPE MILSMMDR


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