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CD44 antigen

 F1MQT9_BOVIN            Unreviewed;       771 AA.
F1MQT9;
03-MAY-2011, integrated into UniProtKB/TrEMBL.
16-NOV-2011, sequence version 2.
30-AUG-2017, entry version 44.
SubName: Full=CD44 antigen {ECO:0000313|Ensembl:ENSBTAP00000048925};
Name=CD44 {ECO:0000313|Ensembl:ENSBTAP00000048925};
Bos taurus (Bovine).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia;
Pecora; Bovidae; Bovinae; Bos.
NCBI_TaxID=9913 {ECO:0000313|Ensembl:ENSBTAP00000048925, ECO:0000313|Proteomes:UP000009136};
[1] {ECO:0000313|Ensembl:ENSBTAP00000048925, ECO:0000313|Proteomes:UP000009136}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000048925,
ECO:0000313|Proteomes:UP000009136};
PubMed=19393038; DOI=10.1186/gb-2009-10-4-r42;
Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C.,
Puiu D., Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S.,
Marcais G., Roberts M., Subramanian P., Yorke J.A., Salzberg S.L.;
"A whole-genome assembly of the domestic cow, Bos taurus.";
Genome Biol. 10:R42.01-R42.10(2009).
[2] {ECO:0000313|Ensembl:ENSBTAP00000048925}
IDENTIFICATION.
STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000048925};
Ensembl;
Submitted (MAR-2016) to UniProtKB.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|PROSITE-ProRule:PRU00323}.
-!- CAUTION: The sequence shown here is derived from an Ensembl
automatic analysis pipeline and should be considered as
preliminary data. {ECO:0000313|Ensembl:ENSBTAP00000048925}.
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EMBL; DAAA02041295; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; DAAA02041296; -; NOT_ANNOTATED_CDS; Genomic_DNA.
PaxDb; F1MQT9; -.
Ensembl; ENSBTAT00000055025; ENSBTAP00000048925; ENSBTAG00000011578.
eggNOG; ENOG410IZCP; Eukaryota.
eggNOG; ENOG4111S6T; LUCA.
GeneTree; ENSGT00530000063822; -.
OMA; SHPMGRG; -.
OrthoDB; EOG091G0F98; -.
TreeFam; TF334173; -.
Reactome; R-BTA-1474228; Degradation of the extracellular matrix.
Reactome; R-BTA-202733; Cell surface interactions at the vascular wall.
Reactome; R-BTA-216083; Integrin cell surface interactions.
Reactome; R-BTA-2160916; Hyaluronan uptake and degradation.
Reactome; R-BTA-6798695; Neutrophil degranulation.
Proteomes; UP000009136; Chromosome 15.
Bgee; ENSBTAG00000011578; -.
ExpressionAtlas; F1MQT9; baseline and differential.
GO; GO:0016324; C:apical plasma membrane; IEA:Ensembl.
GO; GO:0009986; C:cell surface; IEA:Ensembl.
GO; GO:0005829; C:cytosol; IEA:Ensembl.
GO; GO:0070062; C:extracellular exosome; IEA:Ensembl.
GO; GO:0005925; C:focal adhesion; IEA:Ensembl.
GO; GO:0005794; C:Golgi apparatus; IEA:Ensembl.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0031258; C:lamellipodium membrane; IEA:Ensembl.
GO; GO:0035692; C:macrophage migration inhibitory factor receptor complex; IEA:Ensembl.
GO; GO:0004896; F:cytokine receptor activity; IEA:Ensembl.
GO; GO:0005540; F:hyaluronic acid binding; IEA:Ensembl.
GO; GO:0051216; P:cartilage development; IEA:Ensembl.
GO; GO:0044344; P:cellular response to fibroblast growth factor stimulus; IEA:Ensembl.
GO; GO:0030214; P:hyaluronan catabolic process; IEA:Ensembl.
GO; GO:0070487; P:monocyte aggregation; IEA:Ensembl.
GO; GO:0043154; P:negative regulation of cysteine-type endopeptidase activity involved in apoptotic process; IEA:Ensembl.
GO; GO:0043518; P:negative regulation of DNA damage response, signal transduction by p53 class mediator; IEA:Ensembl.
GO; GO:1902166; P:negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; IEA:Ensembl.
GO; GO:0070374; P:positive regulation of ERK1 and ERK2 cascade; IEA:Ensembl.
GO; GO:0034116; P:positive regulation of heterotypic cell-cell adhesion; IEA:Ensembl.
GO; GO:1900625; P:positive regulation of monocyte aggregation; IEA:Ensembl.
GO; GO:0033138; P:positive regulation of peptidyl-serine phosphorylation; IEA:Ensembl.
GO; GO:0050731; P:positive regulation of peptidyl-tyrosine phosphorylation; IEA:Ensembl.
GO; GO:2000392; P:regulation of lamellipodium morphogenesis; IEA:Ensembl.
GO; GO:0044319; P:wound healing, spreading of cells; IEA:Ensembl.
Gene3D; 3.10.100.10; -; 1.
InterPro; IPR016186; C-type_lectin-like/link.
InterPro; IPR001231; CD44_antigen.
InterPro; IPR016187; CTDL_fold.
InterPro; IPR000538; Link_dom.
PANTHER; PTHR10225:SF8; PTHR10225:SF8; 1.
Pfam; PF00193; Xlink; 1.
PRINTS; PR00658; CD44.
PRINTS; PR01265; LINKMODULE.
SMART; SM00445; LINK; 1.
SUPFAM; SSF56436; SSF56436; 1.
PROSITE; PS01241; LINK_1; 1.
PROSITE; PS50963; LINK_2; 1.
4: Predicted;
Complete proteome {ECO:0000313|Proteomes:UP000009136};
Membrane {ECO:0000256|SAM:Phobius};
Reference proteome {ECO:0000313|Proteomes:UP000009136};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius}.
TRANSMEM 679 700 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 27 115 Link. {ECO:0000259|PROSITE:PS50963}.
SEQUENCE 771 AA; 84147 MW; C37A8158D665D4C1 CRC64;
LSKLWMQNNL TVPFHPTDLN ITCRYAGVFH VEKNGRYSIS KTEAADLCKA FNSTLPTMAQ
MEAARNIGFE TCRYGFIEGH VVIPRIHPNS ICAANNTGVY ILTSNTSQYD TYCFNASAPP
GEDCTSVTDL PNAFEGPITI TIVNRDGTRY TKKGEYRTNP EDINPSVVSP SSPPDDEMSS
GSPSERSTSG GYSIFHTHLP TVHPSPDQDG PWVSSEPENT SDTTLYSNHH AAAQEQCNWI
WSSFGNSQPK TQDQTTAAVT DSIRTRPLKR SLLKNAYSWF PLMKRSQKHL LTQVTTTGTD
SSIISAGWEP TEENEDERDR HPSYSGSGIG DDEDFISSTI STTPRVFTHL QENQNWIQRN
PDHSNPEASL QTTTRMTDVD RSSTSAYGES WTQEPHSSRS HRGYHDEEET PHSTSTTQAP
TTSTAEETAT QKEQWFESGR PGEFPHTPKE DSHSTAGTTA STHVSHPHQR VTTQSQEDSS
WTYVFDPVSH PMGRGHQTKG RMDTDTSPST TLQPSADPNM SSVGDLDRTG PLSMTTQQSD
THSFSPSHGG LEEDQGHSTT AAPTSINRND GRRGGNLPED ATASMEGYTH SPDTNEYTTL
TPVTPTKTGS PGVTEVTIVG DSTSKADLTL PGDYGSSHDP SGRSYTTHAS ESAGHSSGSE
EHGANTTSGP MRKPQIPEWL IILASLLALA LILAVCIAVN SRRRCGQKKK LVINNGNGTM
EERKPSGLNG EASKSQEMVH LVNKGSSETQ DQFMTADETR NLQNVDMKIG V


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