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CD44 molecule (Indian blood group)

 U3IXM2_ANAPL            Unreviewed;       740 AA.
U3IXM2;
13-NOV-2013, integrated into UniProtKB/TrEMBL.
13-NOV-2013, sequence version 1.
27-SEP-2017, entry version 31.
SubName: Full=CD44 molecule (Indian blood group) {ECO:0000313|Ensembl:ENSAPLP00000011998};
Name=CD44 {ECO:0000313|Ensembl:ENSAPLP00000011998};
Anas platyrhynchos (Mallard) (Anas boschas).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae;
Anas.
NCBI_TaxID=8839 {ECO:0000313|Ensembl:ENSAPLP00000011998, ECO:0000313|Proteomes:UP000016666};
[1] {ECO:0000313|Ensembl:ENSAPLP00000011998}
NUCLEOTIDE SEQUENCE.
Li N.;
"The genome sequence and transcriptome of duck provide insight into
the interaction host.";
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSAPLP00000011998}
NUCLEOTIDE SEQUENCE.
PubMed=23749191; DOI=10.1038/ng.2657;
Huang Y., Li Y., Burt D.W., Chen H., Zhang Y., Qian W., Kim H.,
Gan S., Zhao Y., Li J., Yi K., Feng H., Zhu P., Li B., Liu Q.,
Fairley S., Magor K.E., Du Z., Hu X., Goodman L., Tafer H., Vignal A.,
Lee T., Kim K.W., Sheng Z., An Y., Searle S., Herrero J.,
Groenen M.A., Crooijmans R.P., Faraut T., Cai Q., Webster R.G.,
Aldridge J.R., Warren W.C., Bartschat S., Kehr S., Marz M.,
Stadler P.F., Smith J., Kraus R.H., Zhao Y., Ren L., Fei J.,
Morisson M., Kaiser P., Griffin D.K., Rao M., Pitel F., Wang J.,
Li N.;
"The duck genome and transcriptome provide insight into an avian
influenza virus reservoir species.";
Nat. Genet. 45:776-783(2013).
[3] {ECO:0000313|Ensembl:ENSAPLP00000011998}
IDENTIFICATION.
Ensembl;
Submitted (SEP-2013) to UniProtKB.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|PROSITE-ProRule:PRU00323}.
-!- CAUTION: The sequence shown here is derived from an Ensembl
automatic analysis pipeline and should be considered as
preliminary data. {ECO:0000313|Ensembl:ENSAPLP00000011998}.
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EMBL; ADON01015912; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; ADON01015913; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; ADON01015914; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Ensembl; ENSAPLT00000012731; ENSAPLP00000011998; ENSAPLG00000012207.
GeneTree; ENSGT00530000063822; -.
OMA; SHPMGRG; -.
OrthoDB; EOG091G0F98; -.
Proteomes; UP000016666; Unassembled WGS sequence.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005540; F:hyaluronic acid binding; IEA:InterPro.
GO; GO:0007155; P:cell adhesion; IEA:InterPro.
Gene3D; 3.10.100.10; -; 1.
InterPro; IPR016186; C-type_lectin-like/link.
InterPro; IPR001231; CD44_antigen.
InterPro; IPR016187; CTDL_fold.
InterPro; IPR000538; Link_dom.
PANTHER; PTHR10225:SF8; PTHR10225:SF8; 1.
Pfam; PF00193; Xlink; 1.
PRINTS; PR00658; CD44.
PRINTS; PR01265; LINKMODULE.
SMART; SM00445; LINK; 1.
SUPFAM; SSF56436; SSF56436; 1.
PROSITE; PS01241; LINK_1; 1.
PROSITE; PS50963; LINK_2; 1.
4: Predicted;
Complete proteome {ECO:0000313|Proteomes:UP000016666};
Membrane {ECO:0000256|SAM:Phobius};
Reference proteome {ECO:0000313|Proteomes:UP000016666};
Signal {ECO:0000256|SAM:SignalP};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius}.
SIGNAL 1 22 {ECO:0000256|SAM:SignalP}.
CHAIN 23 740 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5004644045.
TRANSMEM 644 665 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 32 121 Link. {ECO:0000259|PROSITE:PS50963}.
SEQUENCE 740 AA; 81954 MW; 395E0A02A7146BBB CRC64;
MNRLRSPHSL WTLCLSFSAC ITEFNVSCRY RGVFHVEKNG RYSLTRTEAA DLCRALNSTL
STLEQLEKAH ELGFETCRYG FVVGYIVIPR INPYHLCAAN HTGIYKLSAN TTGRYDAYCY
NATETRDKAC EPIERIDTSF LSNQGEIVTL IIDNEDGSRY NADGTRHSGD SSTSGVDDEN
VGSGSSHDTT PVDTSIRRSS PSYYGSVTPV SHLSDHSSGG GEKEFPVTNS VKYSREKKAK
NKKGETTYAF LSIFLLPCAN KRSHHYTDDE ISPTSTDISL VTGFDDFAKE DDERHRGSTK
DIEEEHLNFT APGPPHVHLE KTTTQTWWNP FSIPYVYLGT TSQSSADVTS SGNGSDDEDS
SEETTYPTVF PGWDISVAKK EYAPSTTPGP PHVHLEKTTT QTWWNPFSNE WWWSNPREKT
QEPTQTTRGK EHHYKTVVAE DTVSPEASKY TEFNITTADV TSSGNGSDDE DSSEETTYPT
VFPGWDITMD LQHGVLLEIS TQDPWNPSYT VSYQGLHIDD HHNQLQTLLS TNNEVGWGTE
GITHSTDAPG VLVEGDTVHY KHFPGARTPG DMIKSCFFSG LSSLNTGIFN KCLSKGLFGE
KALPFHEDGD HGSRKGNFEP TPNPGENATT TITSEPRSSQ IPDWLIIVAA LLALALILVV
CIAVSSRRRC GQKKKLVINN GKGAVEDRKT SELNGDASKS QEMVHLVHKE QSNDRTGASD
EFLTIDETQN HQELDMKSGV


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