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CD47 molecule (Leukocyte surface antigen CD47)

 Q08DW0_BOVIN            Unreviewed;       303 AA.
Q08DW0;
31-OCT-2006, integrated into UniProtKB/TrEMBL.
31-OCT-2006, sequence version 1.
23-MAY-2018, entry version 88.
SubName: Full=CD47 molecule {ECO:0000313|EMBL:AAI23545.1};
SubName: Full=Leukocyte surface antigen CD47 {ECO:0000313|Ensembl:ENSBTAP00000048646};
Name=CD47 {ECO:0000313|EMBL:AAI23545.1,
ECO:0000313|Ensembl:ENSBTAP00000048646, ECO:0000313|VGNC:VGNC:27035};
Bos taurus (Bovine).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia;
Pecora; Bovidae; Bovinae; Bos.
NCBI_TaxID=9913 {ECO:0000313|EMBL:AAI23545.1};
[1] {ECO:0000313|EMBL:AAI23545.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Hereford {ECO:0000313|EMBL:AAI23545.1};
TISSUE=Fetal cerebellum {ECO:0000313|EMBL:AAI23545.1};
Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D.,
Siddiqui A., Holt R., Jones S.J., Marra M.A.;
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSBTAP00000048646, ECO:0000313|Proteomes:UP000009136}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000048646,
ECO:0000313|Proteomes:UP000009136};
PubMed=19393038; DOI=10.1186/gb-2009-10-4-r42;
Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C.,
Puiu D., Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S.,
Marcais G., Roberts M., Subramanian P., Yorke J.A., Salzberg S.L.;
"A whole-genome assembly of the domestic cow, Bos taurus.";
Genome Biol. 10:R42.01-R42.10(2009).
[3] {ECO:0000313|Ensembl:ENSBTAP00000048646}
IDENTIFICATION.
STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000048646};
Ensembl;
Submitted (MAR-2016) to UniProtKB.
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EMBL; DAAA02001236; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC123544; AAI23545.1; -; mRNA.
RefSeq; NP_777133.2; NM_174708.2.
UniGene; Bt.87076; -.
Ensembl; ENSBTAT00000055450; ENSBTAP00000048646; ENSBTAG00000003585.
GeneID; 282661; -.
KEGG; bta:282661; -.
CTD; 961; -.
VGNC; VGNC:27035; CD47.
eggNOG; ENOG410IJTS; Eukaryota.
eggNOG; ENOG41113GI; LUCA.
GeneTree; ENSGT00390000007697; -.
HOVERGEN; HBG003808; -.
KO; K06266; -.
OMA; VYMKFVA; -.
TreeFam; TF336026; -.
Reactome; R-BTA-202733; Cell surface interactions at the vascular wall.
Reactome; R-BTA-216083; Integrin cell surface interactions.
Reactome; R-BTA-391160; Signal regulatory protein family interactions.
Reactome; R-BTA-6798695; Neutrophil degranulation.
Proteomes; UP000009136; Chromosome 1.
Bgee; ENSBTAG00000003585; -.
ExpressionAtlas; Q08DW0; baseline and differential.
GO; GO:0070062; C:extracellular exosome; IEA:Ensembl.
GO; GO:0005887; C:integral component of plasma membrane; IEA:Ensembl.
GO; GO:0070053; F:thrombospondin receptor activity; IEA:Ensembl.
GO; GO:0008228; P:opsonization; IEA:Ensembl.
GO; GO:0008284; P:positive regulation of cell proliferation; IEA:Ensembl.
GO; GO:0050729; P:positive regulation of inflammatory response; IEA:Ensembl.
GO; GO:0050766; P:positive regulation of phagocytosis; IEA:Ensembl.
GO; GO:0050870; P:positive regulation of T cell activation; IEA:Ensembl.
GO; GO:0009617; P:response to bacterium; IEA:Ensembl.
CDD; cd16090; IgV_CD47; 1.
Gene3D; 2.60.40.10; -; 1.
InterPro; IPR006704; CD47.
InterPro; IPR013147; CD47_TM.
InterPro; IPR013270; CD47_Vset.
InterPro; IPR007110; Ig-like_dom.
InterPro; IPR013783; Ig-like_fold.
InterPro; IPR037805; IgV_CD47.
PANTHER; PTHR10613; PTHR10613; 1.
Pfam; PF04549; CD47; 1.
Pfam; PF08204; V-set_CD47; 1.
PROSITE; PS50835; IG_LIKE; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000009136};
Membrane {ECO:0000256|SAM:Phobius};
Reference proteome {ECO:0000313|Proteomes:UP000009136};
Signal {ECO:0000256|SAM:SignalP};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius}.
SIGNAL 1 18 {ECO:0000256|SAM:SignalP}.
CHAIN 19 303 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5014102229.
TRANSMEM 141 163 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 175 196 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 208 228 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 235 256 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 268 287 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 3 125 Ig-like. {ECO:0000259|PROSITE:PS50835}.
SEQUENCE 303 AA; 33311 MW; D8ABE579DACAFD7D CRC64;
MWPLVVVLLL GSVRCGSAQL IFNAIKSVEY TLCNQTVVIP CFVNNVETKN ITELYVRWKF
KGENIFIFDG SQRMSKPSSN FSSAEIAPSE LLRGIASLKM AKSDAVLGNY TCEVTELSRE
GETIIELKYR VVSWFSPNEN ILIVIFPVLA ILLFWGQFGI VTLKYKSNYT KEKAIFLLVA
GLLLTVLVIV GAFLFIPGEY STKNASGLGL IVLPTIILIL LHYCVFMIAM GMSSFTISIL
ILQLLGYVLS VVGFSLCVSE CIPVHGPLLI SGLGIIALAE LLGLVYMKCV ASNHRTIQPP
KSN


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