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CTCF (GH14774p)

 Q9VS55_DROME            Unreviewed;       818 AA.
Q9VS55; Q961N1;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-OCT-2002, sequence version 2.
25-OCT-2017, entry version 142.
SubName: Full=CTCF {ECO:0000313|EMBL:AAF50573.2};
SubName: Full=GH14774p {ECO:0000313|EMBL:AAK92918.1};
Name=CTCF {ECO:0000313|EMBL:AAF50573.2,
ECO:0000313|FlyBase:FBgn0035769};
Synonyms=CG8591 {ECO:0000313|EMBL:AAF50573.2,
ECO:0000313|FlyBase:FBgn0035769}, dCTCF {ECO:0000313|EMBL:AAF50573.2},
Dmel\CG8591 {ECO:0000313|EMBL:AAF50573.2};
ORFNames=Dmel_CG8591 {ECO:0000313|EMBL:AAF50573.2};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF50573.2, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF50573.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAK92918.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Berkeley {ECO:0000313|EMBL:AAK92918.1};
Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J.,
Champe M., Chavez C., Dorsett V., Farfan D., Frise E., George R.,
Gonzalez M., Guarin H., Li P., Liao G., Miranda A., Mungall C.J.,
Nunoo J., Pacleb J., Paragas V., Park S., Phouanenavong S., Wan K.,
Yu C., Lewis S.E., Rubin G.M., Celniker S.;
Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|EMBL:AAF50573.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[4] {ECO:0000313|EMBL:AAF50573.2, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[5] {ECO:0000313|EMBL:AAF50573.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[6] {ECO:0000313|EMBL:AAF50573.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[7] {ECO:0000313|EMBL:AAF50573.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[8] {ECO:0000313|EMBL:AAF50573.2}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF50573.2}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:AAF50573.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[11] {ECO:0000313|EMBL:AAF50573.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[12] {ECO:0000313|EMBL:AAF50573.2}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; AE014296; AAF50573.2; -; Genomic_DNA.
EMBL; AY051494; AAK92918.1; -; mRNA.
RefSeq; NP_648109.1; NM_139852.4.
UniGene; Dm.7681; -.
SMR; Q9VS55; -.
IntAct; Q9VS55; 2.
MINT; MINT-307365; -.
STRING; 7227.FBpp0076588; -.
EnsemblMetazoa; FBtr0076878; FBpp0076588; FBgn0035769.
GeneID; 38817; -.
KEGG; dme:Dmel_CG8591; -.
UCSC; CG8591-RA; d. melanogaster.
CTD; 10664; -.
FlyBase; FBgn0035769; CTCF.
eggNOG; KOG1721; Eukaryota.
eggNOG; COG5048; LUCA.
GeneTree; ENSGT00890000139371; -.
OMA; IRHTRYK; -.
OrthoDB; EOG091G06B4; -.
ChiTaRS; CTCF; fly.
GenomeRNAi; 38817; -.
Proteomes; UP000000803; Chromosome 3L.
Bgee; FBgn0035769; -.
ExpressionAtlas; Q9VS55; differential.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0043035; F:chromatin insulator sequence binding; IDA:FlyBase.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0000976; F:transcription regulatory region sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0043007; P:maintenance of rDNA; IDA:FlyBase.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:FlyBase.
GO; GO:0006349; P:regulation of gene expression by genetic imprinting; IMP:FlyBase.
GO; GO:0035075; P:response to ecdysone; IDA:UniProtKB.
GO; GO:0007379; P:segment specification; IMP:FlyBase.
Gene3D; 2.40.155.10; -; 3.
Gene3D; 3.30.40.10; -; 1.
InterPro; IPR009017; GFP.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
InterPro; IPR013083; Znf_RING/FYVE/PHD.
SMART; SM00355; ZnF_C2H2; 11.
SUPFAM; SSF57667; SSF57667; 6.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 7.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 11.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00042};
Proteomics identification {ECO:0000213|PeptideAtlas:Q9VS55};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00042};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00042}.
DOMAIN 294 321 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 322 349 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 350 378 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 379 406 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 407 434 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 435 458 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 465 493 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 494 521 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 522 549 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 550 578 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 587 614 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
SEQUENCE 818 AA; 93121 MW; 6EFABCE45679482D CRC64;
MPRRTKKDED PEDLQTFLNN FHKEIEGNSD EKVVNTILEA ISAEAIDLDE NGAEAGGSKP
MEEAEADLDH AEEAEEEEED DEDKYFIDDE GNCYIKTTPK KQKELQKKLK QAAAKPGKAT
RSVVSTATNK SINLRPAKST PKATTSKPPP EPKAISVRPA RAAAAKAKQS AMPPPPALVV
KVPAPRGRPR KNPVIPKPEP MDLERELEEL VDEPDISSMV TELSDYTVDE AAVEAATATL
TPNEAEVYEF EDNATTEDEN ADKKDVDFVL SNKEVKLKTA SSTSQNSNAS GHKYSCPHCP
YTASKKFLIT RHSRSHDVEP SFKCSICERS FRSNVGLQNH INTHMGNKPH KCKLCESAFT
TSGELVRHTR YKHTKEKPHK CTECTYASVE LTKLRRHMTC HTGERPYQCP HCTYASQDMF
KLKRHMVIHT GEKKYQCDIC KSRFTQSNSL KAHKLIHSVV DKPVFQCNYC PTTCGRKADL
RVHIKHMHTS DVPMTCRRCG QQLPDRYQYK LHVKSHEGEK CYSCKLCSYA SVTQRHLASH
MLIHLDEKPF HCDQCPQAFR QRQLLRRHMN LVHNEEYQPP EPREKLHKCP SCPREFTHKG
NLMRHMETHD DSANAREKRR RLKLGRNVRL QKDGTVITLI KDQYVDMDRD QEENEEDDNP
ESYDLAEIEP ENSEAEDADD DVETIVSDPI RQRIKPAPII INKQARLAAS EKQPMIINQR
LRSQRGTKTF HIKEEPDNSD FTVEWQGDDG EVMVVELVNG DEEVLVKHEP SANSKISAKN
CFGFEDDDDY EEYGDGENEV DGASQEFLQL MDMIEQDS


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