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Calnexin 99A, isoform E

 Q0KHZ9_DROME            Unreviewed;       604 AA.
Q0KHZ9;
03-OCT-2006, integrated into UniProtKB/TrEMBL.
01-APR-2015, sequence version 2.
22-NOV-2017, entry version 102.
SubName: Full=Calnexin 99A, isoform E {ECO:0000313|EMBL:ABI31215.2};
Name=Cnx99A {ECO:0000313|EMBL:ABI31215.2,
ECO:0000313|FlyBase:FBgn0015622};
Synonyms=Cnx {ECO:0000313|EMBL:ABI31215.2},
cnx {ECO:0000313|EMBL:ABI31215.2},
Cnx99a {ECO:0000313|EMBL:ABI31215.2},
Dmel\CG11958 {ECO:0000313|EMBL:ABI31215.2};
ORFNames=CG11958 {ECO:0000313|EMBL:ABI31215.2,
ECO:0000313|FlyBase:FBgn0015622},
Dmel_CG11958 {ECO:0000313|EMBL:ABI31215.2};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:ABI31215.2, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:ABI31215.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:ABI31215.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:ABI31215.2, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:ABI31215.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:ABI31215.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:ABI31215.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:ABI31215.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:ABI31215.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
-!- SUBCELLULAR LOCATION: Endoplasmic reticulum
{ECO:0000256|SAAS:SAAS00583789}.
-!- SIMILARITY: Belongs to the calreticulin family.
{ECO:0000256|RuleBase:RU362126, ECO:0000256|SAAS:SAAS00583791}.
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EMBL; AE014297; ABI31215.2; -; Genomic_DNA.
RefSeq; NP_001036766.2; NM_001043301.2.
UniGene; Dm.8009; -.
ProteinModelPortal; Q0KHZ9; -.
SMR; Q0KHZ9; -.
PRIDE; Q0KHZ9; -.
EnsemblMetazoa; FBtr0334873; FBpp0306896; FBgn0015622.
GeneID; 44643; -.
KEGG; dme:Dmel_CG11958; -.
UCSC; CG11958-RC; d. melanogaster.
CTD; 44643; -.
FlyBase; FBgn0015622; Cnx99A.
GeneTree; ENSGT00430000030841; -.
InParanoid; Q0KHZ9; -.
KO; K08054; -.
OrthoDB; EOG091G04SS; -.
Reactome; R-DME-901042; Calnexin/calreticulin cycle.
ChiTaRS; Cnx99A; fly.
GenomeRNAi; 44643; -.
Proteomes; UP000000803; Chromosome 3R.
ExpressionAtlas; Q0KHZ9; differential.
Genevisible; Q0KHZ9; DM.
GO; GO:0012505; C:endomembrane system; IDA:FlyBase.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0097038; C:perinuclear endoplasmic reticulum; IDA:FlyBase.
GO; GO:0005886; C:plasma membrane; IDA:FlyBase.
GO; GO:0005509; F:calcium ion binding; IEA:InterPro.
GO; GO:0051082; F:unfolded protein binding; IEA:InterPro.
GO; GO:0006457; P:protein folding; IEA:InterPro.
GO; GO:0010522; P:regulation of calcium ion transport into cytosol; IMP:FlyBase.
GO; GO:0001895; P:retina homeostasis; IMP:FlyBase.
GO; GO:0016063; P:rhodopsin biosynthetic process; IMP:FlyBase.
InterPro; IPR001580; Calret/calnex.
InterPro; IPR018124; Calret/calnex_CS.
InterPro; IPR009033; Calreticulin/calnexin_P_dom_sf.
InterPro; IPR013320; ConA-like_dom_sf.
PANTHER; PTHR11073; PTHR11073; 1.
Pfam; PF00262; Calreticulin; 1.
PRINTS; PR00626; CALRETICULIN.
SUPFAM; SSF49899; SSF49899; 1.
SUPFAM; SSF63887; SSF63887; 1.
PROSITE; PS00804; CALRETICULIN_2; 1.
PROSITE; PS00805; CALRETICULIN_REPEAT; 1.
1: Evidence at protein level;
Chaperone {ECO:0000256|RuleBase:RU362126,
ECO:0000256|SAAS:SAAS00431394};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Endoplasmic reticulum {ECO:0000256|RuleBase:RU362126};
Membrane {ECO:0000256|RuleBase:RU362126};
Proteomics identification {ECO:0000213|PeptideAtlas:Q0KHZ9};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Signal {ECO:0000256|RuleBase:RU362126};
Transmembrane {ECO:0000256|RuleBase:RU362126};
Transmembrane helix {ECO:0000256|RuleBase:RU362126}.
SIGNAL 1 29 {ECO:0000256|RuleBase:RU362126}.
CHAIN 30 604 {ECO:0000256|RuleBase:RU362126}.
/FTId=PRO_5004175082.
TRANSMEM 489 510 Helical. {ECO:0000256|RuleBase:RU362126}.
SEQUENCE 604 AA; 68893 MW; 6F667A0E409EC3AA CRC64;
MAWKMGGNRA ATLALLFASS LLLLSAANAA DLDTESDDFE DGYVEDVQEE PAVIGGDEKL
AYESPVIDAK KFHFADHFDD VEESRKRWVL SQAKKDDIAE EISKYDGIWN WESPQRIVWA
NDLGLVLKSK AKHAAIAAPL RKPFEFKSDK PLVVQYEVTL QEGQECGGSY LKLLSAGKDT
EQLKAFNDKT PYTIMFGPDK CGNDVKMHFI FRHVNPINGT ITEKHCNKPK NRLEEPFKDK
LPHLYQLVVR PDNSFEIRVD HKIINEGSLL TDFKPPVNPP AEIDDPNDHK PESWDEREKI
PDPTAHKPED WDEDAPPQLP DTDAVMPNGW LEDEPDMIFD PTATKPEDWD AEIDGEWEAP
LVDNPVCEKA PGCGKWKAPL IPNPNYKGKW RAPMIENPNY QGKWAPRKIP NPDFFEDLKP
FQMTPISAVG LELWSMSSDI LFDNLIITDD VEVARDFAAN SFDIKRRYID RESKTFWHRL
MRRMNYKPGW WALYFVYLLI PASCYVFYLY RRAKEDSAAK KAAAEAKKSD DPQPDDEPEA
EEESDERAAG DTSKESTPLS ASPKKNQKSD LDDNEEESKA AESREPAQTE ESNTKTRKRQ
ARKE


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