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Capsid protein (Core antigen) (Core protein) (HBcAg) (p21.5)

 Q9WMC7_HBV              Unreviewed;       212 AA.
Q9WMC7;
01-NOV-1999, integrated into UniProtKB/TrEMBL.
01-NOV-1999, sequence version 1.
28-MAR-2018, entry version 88.
RecName: Full=Capsid protein {ECO:0000256|HAMAP-Rule:MF_04076};
AltName: Full=Core antigen {ECO:0000256|HAMAP-Rule:MF_04076};
AltName: Full=Core protein {ECO:0000256|HAMAP-Rule:MF_04076};
AltName: Full=HBcAg {ECO:0000256|HAMAP-Rule:MF_04076};
AltName: Full=p21.5 {ECO:0000256|HAMAP-Rule:MF_04076};
Name=C {ECO:0000256|HAMAP-Rule:MF_04076,
ECO:0000256|RuleBase:RU361253, ECO:0000313|EMBL:BAA32885.1};
Synonyms=PC {ECO:0000313|EMBL:ASY05025.1},
preC {ECO:0000313|EMBL:AKJ75585.1};
Hepatitis B virus (HBV).
Viruses; Retro-transcribing viruses; Hepadnaviridae;
Orthohepadnavirus.
NCBI_TaxID=10407 {ECO:0000313|EMBL:BAA32885.1};
NCBI_TaxID=9606; Homo sapiens (Human).
NCBI_TaxID=9598; Pan troglodytes (Chimpanzee).
[1] {ECO:0000313|EMBL:BAA85356.1, ECO:0000313|Proteomes:UP000153310}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Genotype C {ECO:0000313|EMBL:BAA85356.1};
PubMed=3430800;
Okamoto H., Imai M., Kametani M., Nakamura T., Mayumi M.;
"Genomic heterogeneity of hepatitis B virus in a 54-year-old woman who
contracted the infection through materno-fetal transmission.";
Jpn. J. Exp. Med. 57:231-236(1987).
[2] {ECO:0000313|EMBL:BAA32885.1}
NUCLEOTIDE SEQUENCE.
STRAIN=15D15HCC {ECO:0000313|EMBL:BAA32885.1};
PubMed=9930189; DOI=10.1007/s007050050463;
Takahashi K., Akahane Y., Hino K., Ohta Y., Mishiro S.;
"Hepatitis B virus genomic sequence in the circulation of
hepatocellular carcinoma patients: comparative analysis of 40 full-
length isolates.";
Arch. Virol. 143:2313-2326(1998).
[3] {ECO:0000313|EMBL:BAA85356.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Genotype C {ECO:0000313|EMBL:BAA85356.1};
Okamoto H.;
Submitted (OCT-1999) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|EMBL:AAP57285.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Mutant 23 {ECO:0000313|EMBL:AAP57285.1};
Yan X.M., Dong H., Gao J.M., Zhang L.P., Peng Z.G., Hua Y.K.;
"Clinicopathological Study on the pre-C and C Genes Mutation of
Hepatitis B Virus.";
Submitted (APR-2003) to the EMBL/GenBank/DDBJ databases.
[5] {ECO:0000313|EMBL:AAV52028.1, ECO:0000313|Proteomes:UP000097763}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=He127 {ECO:0000313|EMBL:AAV52028.1};
PubMed=15543574; DOI=10.1002/jmv.20230;
Song B.C., Kim H., Kim S.H., Cha C.Y., Kook Y.H., Kim B.J.;
"Comparison of full length sequences of hepatitis B virus isolates in
hepatocellular carcinoma patients and asymptomatic carriers of
Korea.";
J. Med. Virol. 75:13-19(2005).
[6] {ECO:0000313|EMBL:AAZ42210.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Cq2-A2 {ECO:0000313|EMBL:AAZ42210.1},
Cq5-14 {ECO:0000313|EMBL:AAZ42309.1}, and
Cq5-17 {ECO:0000313|EMBL:AAZ42311.1};
Liu L., Lan L., Li J.G., Deng G.H., Zhou J.J., Wang X.H., Wang Y.M.;
"Linked Precore/Core Mutations Responsible For Immune Escape: A
Dynamic Study on Memory Genomes of HBV Quasispecies.";
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[7] {ECO:0000313|EMBL:ABY57242.1, ECO:0000313|Proteomes:UP000142847, ECO:0000313|Proteomes:UP000167889}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=G67-1251 {ECO:0000313|EMBL:ABY57248.1}, and
G67-190 {ECO:0000313|EMBL:ABY57242.1};
PubMed=19864922; DOI=10.1159/000252912;
Shen T., Gao J.M., Zou Y.L., Dong H., Yan X.M.;
"Novel hepatitis B virus subgenotype in the southern Yunnan Province
of China.";
Intervirology 52:340-346(2009).
[8] {ECO:0000313|EMBL:ACX36243.1}
NUCLEOTIDE SEQUENCE.
STRAIN=J118 {ECO:0000313|EMBL:ACX36243.1};
Li X.D., Xu Z.H., Li L., Wang Y., Zhong Y.W., Xu D.P.;
Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:ACX36243.1, ECO:0000313|Proteomes:UP000122988}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=J118 {ECO:0000313|EMBL:ACX36243.1};
PubMed=20580309; DOI=10.1016/j.jcv.2010.05.010;
Xu Z., Liu Y., Xu T., Chen L., Si L., Wang Y., Ren X., Zhong Y.,
Zhao J., Xu D.;
"Acute hepatitis B infection associated with drug-resistant hepatitis
B virus.";
J. Clin. Virol. 48:270-274(2010).
[10] {ECO:0000313|EMBL:ACY07383.1, ECO:0000313|Proteomes:UP000108822, ECO:0000313|Proteomes:UP000160468}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=KOR18LC {ECO:0000313|EMBL:ACY07383.1}, and
KOR28LC {ECO:0000313|EMBL:ACY07431.1};
PubMed=20513074; DOI=10.1002/jmv.21844;
Ahn S.H., Yuen L., Han K.H., Littlejohn M., Chang H.Y., Damerow H.,
Ayres A., Heo J., Locarnini S., Revill P.A.;
"Molecular and clinical characteristics of hepatitis B virus in
Korea.";
J. Med. Virol. 82:1126-1134(2010).
[11] {ECO:0000313|Proteomes:UP000115313, ECO:0000313|Proteomes:UP000117414, ECO:0000313|Proteomes:UP000131026}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=1746 {ECO:0000313|EMBL:ACJ48262.1},
1912 {ECO:0000313|EMBL:ACJ48420.1},
2151 {ECO:0000313|EMBL:ACJ48632.1},
I121 {ECO:0000313|EMBL:ACM40600.1},
I143 {ECO:0000313|EMBL:ACM40651.1},
I162 {ECO:0000313|EMBL:ACM40682.1}, and
I169 {ECO:0000313|EMBL:ACM40699.1};
PubMed=20848146; DOI=10.1007/s00535-010-0315-4;
Xu Z., Ren X., Liu Y., Li X., Bai S., Zhong Y., Wang L., Mao P.,
Wang H., Xin S., Wong V.W., Chan H.L., Zoulim F., Xu D.;
"Association of hepatitis B virus mutations in basal core promoter and
precore regions with severity of liver disease: an investigation of
793 Chinese patients with mild and severe chronic hepatitis B and
acute-on-chronic liver failure.";
J. Gastroenterol. 46:391-400(2011).
[12] {ECO:0000313|EMBL:AFS89306.1, ECO:0000313|Proteomes:UP000162978}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=G181 {ECO:0000313|EMBL:AFS89306.1};
PubMed=23272650; DOI=10.1186/1471-2180-12-307;
Zhang D., Dong P., Zhang K., Deng L., Bach C., Chen W., Li F.,
Protzer U., Ding H., Zeng C.;
"Whole genome HBV deletion profiles and the accumulation of preS
deletion mutant during antiviral treatment.";
BMC Microbiol. 12:307-307(2012).
[13] {ECO:0000313|EMBL:AIL52536.1, ECO:0000313|Proteomes:UP000114048}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=MY402913 {ECO:0000313|EMBL:AIL52536.1};
PubMed=26587040;
Suppiah J., Mohd Zain R., Bahari N., Haji Nawi S., Saat Z.;
"G1896A Precore Mutation and Association With HBeAg Status, Genotype
and Clinical Status in Patients With Chronic Hepatitis B.";
Hepat Mon 15:E31490-E31490(2015).
[14] {ECO:0000313|EMBL:AKJ75585.1, ECO:0000313|Proteomes:UP000153144, ECO:0000313|Proteomes:UP000167896}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=1303.32 {ECO:0000313|EMBL:AKJ75975.1}, and
327.6 {ECO:0000313|EMBL:AKJ75585.1};
PubMed=25976382; DOI=10.1016/j.meegid.2015.05.013;
Hao R., Xiang K., Peng Y., Hou J., Sun J., Li Y., Su M., Yan L.,
Zhuang H., Li T.;
"Naturally occurring deletion/insertion mutations within HBV whole
genome sequences in HBeAg-positive chronic hepatitis B patients are
correlated with baseline serum HBsAg and HBeAg levels and might
predict a shorter interval to HBeAg loss and seroconversion during
antiviral treatment.";
Infect. Genet. Evol. 33:261-268(2015).
[15] {ECO:0000313|EMBL:AMQ47831.1}
NUCLEOTIDE SEQUENCE.
STRAIN=43-5s-1 {ECO:0000313|EMBL:AMQ47831.1};
Wen L., He K., Yang H.;
Submitted (FEB-2016) to the EMBL/GenBank/DDBJ databases.
[16] {ECO:0000313|EMBL:ATB54910.1}
NUCLEOTIDE SEQUENCE.
STRAIN=PID:1550 {ECO:0000313|EMBL:ATB54910.1};
Treesuwan P., Khamduang W., Ngo-Giang-Huong N., Sirirungsi W.;
"Genetic diversity of Hepatitis B virus in perinatal transmission.";
Submitted (AUG-2016) to the EMBL/GenBank/DDBJ databases.
[17] {ECO:0000313|EMBL:AUF49586.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BD-HBV53 {ECO:0000313|EMBL:AUF49586.1};
PubMed=29216251; DOI=.1371/journal.pone.0188944;
Munshi S.U., Tran T.T.T., Vo T.N.T., Tabassum S., Sultana N.,
Nguyen T.H., Jahan M., Le C.N., Baker S., Rahman M.;
"Molecular characterization of hepatitis B virus in Bangladesh reveals
a highly recombinant population.";
PLoS ONE 12:e0188944-e0188944(2017).
[18] {ECO:0000313|EMBL:ASY05025.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HBV040003 {ECO:0000313|EMBL:ASY05025.1},
HBV040029 {ECO:0000313|EMBL:ASY05137.1},
HBV040030 {ECO:0000313|EMBL:ASY05144.1},
HBV040080 {ECO:0000313|EMBL:ASY05315.1}, and
HBVM0015 {ECO:0000313|EMBL:ASY05598.1};
Rahman M., Ton T.;
"Molecular characterization of Hepatitis B virus (HBV) in Vietnam.";
Submitted (AUG-2017) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Encapsidates hepatitis delta genome. {ECO:0000256|HAMAP-
Rule:MF_04076}.
-!- FUNCTION: May regulate immune response to the intracellular capsid
in acting as a T-cell tolerogen, by having an immunoregulatory
effect which prevents destruction of infected cells by cytotoxic
T-cells. {ECO:0000256|RuleBase:RU361253}.
-!- FUNCTION: Self assembles to form an icosahedral capsid. Most
capsid appear to be large particles with a icosahedral symmetry of
T=4 and consist of 240 copies of capsid protein, though a fraction
forms smaller T=3 particles consisting of 180 capsid proteins.
Entering capsid are transported along microtubules to the nucleus.
Phosphorylation of the capsid is thought to induce exposure of
nuclear localization signal in the C-terminal portion of the
capsid protein that allows binding to the nuclear pore complex via
the importin (karyopherin-) alpha and beta. Capsids are imported
in intact form through the nuclear pore into the nuclear basket,
where it probably binds NUP153. Only capsids that contain the
mature viral genome can release the viral DNA and capsid protein
into the nucleoplasm. Immature capsids get stucked in the basket.
Capsids encapsulate the pre-genomic RNA and the P protein. Pre-
genomic RNA is reverse transcribed into DNA while the capsid is
still in the cytoplasm. The capsid can then either be directed to
the nucleus, providing more genome for transcription, or bud
through the endoplasmic reticulum to provide new virions.
{ECO:0000256|HAMAP-Rule:MF_04076}.
-!- SUBUNIT: Homodimerizes, then multimerizes. Interacts with cytosol
exposed regions of viral L glycoprotein present in the reticulum-
to-Golgi compartment. Interacts with human FLNB. Phosphorylated
form interacts with host importin alpha; this interaction depends
on the exposure of the NLS, which itself depends upon genome
maturation and/or phosphorylation of the capsid protein. Interacts
with host NUP153. {ECO:0000256|HAMAP-Rule:MF_04076}.
-!- SUBCELLULAR LOCATION: Secreted {ECO:0000256|RuleBase:RU361253}.
Virion {ECO:0000256|HAMAP-Rule:MF_04076}. Host cytoplasm
{ECO:0000256|HAMAP-Rule:MF_04076}.
-!- PTM: Cleaved by host furin. {ECO:0000256|RuleBase:RU361253}.
-!- PTM: Phosphorylated by host SRPK1, SRPK2, and maybe protein kinase
C or GAPDH. Phosphorylation is critical for pregenomic RNA
packaging. Protein kinase C phosphorylation is stimulated by HBx
protein and may play a role in transport of the viral genome to
the nucleus at the late step during viral replication cycle.
{ECO:0000256|HAMAP-Rule:MF_04076}.
-!- SIMILARITY: Belongs to the orthohepadnavirus core antigen family.
{ECO:0000256|HAMAP-Rule:MF_04076}.
-!- SIMILARITY: Belongs to the orthohepadnavirus precore antigen
family. {ECO:0000256|RuleBase:RU361253}.
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EMBL; AY269134; AAP57285.1; -; Genomic_DNA.
EMBL; AY641561; AAV52028.1; -; Genomic_DNA.
EMBL; DQ144553; AAZ42210.1; -; Genomic_DNA.
EMBL; DQ144603; AAZ42309.1; -; Genomic_DNA.
EMBL; DQ144604; AAZ42311.1; -; Genomic_DNA.
EMBL; EU305541; ABY57242.1; -; Genomic_DNA.
EMBL; EU305542; ABY57248.1; -; Genomic_DNA.
EMBL; FJ386576; ACJ48262.1; -; Genomic_DNA.
EMBL; FJ386601; ACJ48420.1; -; Genomic_DNA.
EMBL; FJ386637; ACJ48632.1; -; Genomic_DNA.
EMBL; FJ562268; ACM40600.1; -; Genomic_DNA.
EMBL; FJ562281; ACM40651.1; -; Genomic_DNA.
EMBL; FJ562290; ACM40682.1; -; Genomic_DNA.
EMBL; FJ562295; ACM40699.1; -; Genomic_DNA.
EMBL; GQ377577; ACX36243.1; -; Genomic_DNA.
EMBL; GQ475322; ACY07383.1; -; Genomic_DNA.
EMBL; GQ475332; ACY07431.1; -; Genomic_DNA.
EMBL; JQ040154; AFS89306.1; -; Genomic_DNA.
EMBL; KJ803813; AIL52536.1; -; Genomic_DNA.
EMBL; KR013775; AKJ75585.1; -; Genomic_DNA.
EMBL; KR013852; AKJ75975.1; -; Genomic_DNA.
EMBL; KU667877; AMQ47831.1; -; Genomic_DNA.
EMBL; MF674382; ASY05025.1; -; Genomic_DNA.
EMBL; MF674398; ASY05137.1; -; Genomic_DNA.
EMBL; MF674399; ASY05144.1; -; Genomic_DNA.
EMBL; MF674424; ASY05315.1; -; Genomic_DNA.
EMBL; MF674468; ASY05598.1; -; Genomic_DNA.
EMBL; KX765852; ATB54910.1; -; Genomic_DNA.
EMBL; MF925406; AUF49586.1; -; Genomic_DNA.
EMBL; AB014374; BAA32885.1; -; Genomic_DNA.
EMBL; AB033553; BAA85356.1; -; Genomic_DNA.
Proteomes; UP000097763; Genome.
Proteomes; UP000108822; Genome.
Proteomes; UP000114048; Genome.
Proteomes; UP000115313; Genome.
Proteomes; UP000117414; Genome.
Proteomes; UP000122988; Genome.
Proteomes; UP000131026; Genome.
Proteomes; UP000137022; Genome.
Proteomes; UP000140522; Genome.
Proteomes; UP000142847; Genome.
Proteomes; UP000151343; Genome.
Proteomes; UP000153144; Genome.
Proteomes; UP000153310; Genome.
Proteomes; UP000160468; Genome.
Proteomes; UP000162978; Genome.
Proteomes; UP000167889; Genome.
Proteomes; UP000167896; Genome.
Proteomes; UP000174373; Genome.
GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO; GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0039619; C:T=4 icosahedral viral capsid; IEA:UniProtKB-UniRule.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
GO; GO:0005198; F:structural molecule activity; IEA:UniProtKB-UniRule.
GO; GO:0030683; P:evasion or tolerance by virus of host immune response; IEA:UniProtKB-KW.
GO; GO:0075521; P:microtubule-dependent intracellular transport of viral material towards nucleus; IEA:UniProtKB-UniRule.
GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-UniRule.
GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-UniRule.
GO; GO:0075732; P:viral penetration into host nucleus; IEA:UniProtKB-UniRule.
Gene3D; 1.10.4090.10; -; 1.
HAMAP; MF_04076; HBV_HBEAG; 1.
InterPro; IPR013195; Hepatitis_B_virus_capsid_N.
InterPro; IPR002006; Hepatitis_core.
InterPro; IPR036459; Viral_capsid_core_dom_sf_HBV.
Pfam; PF08290; Hep_core_N; 1.
Pfam; PF00906; Hepatitis_core; 3.
ProDom; PD000874; Vir_capsid_Znf-put_N_Hepatitis; 1.
SUPFAM; SSF47852; SSF47852; 1.
3: Inferred from homology;
Capsid protein {ECO:0000256|HAMAP-Rule:MF_04076};
Complete proteome {ECO:0000313|Proteomes:UP000097763,
ECO:0000313|Proteomes:UP000108822, ECO:0000313|Proteomes:UP000114048,
ECO:0000313|Proteomes:UP000115313};
Cytoplasmic inwards viral transport {ECO:0000256|HAMAP-Rule:MF_04076};
DNA-binding {ECO:0000256|HAMAP-Rule:MF_04076};
Host cytoplasm {ECO:0000256|HAMAP-Rule:MF_04076};
Host-virus interaction {ECO:0000256|HAMAP-Rule:MF_04076,
ECO:0000256|RuleBase:RU361253};
Microtubular inwards viral transport {ECO:0000256|HAMAP-
Rule:MF_04076}; Phosphoprotein {ECO:0000256|HAMAP-Rule:MF_04076};
Repeat {ECO:0000256|HAMAP-Rule:MF_04076,
ECO:0000256|SAAS:SAAS00779256};
RNA-binding {ECO:0000256|HAMAP-Rule:MF_04076};
T=4 icosahedral capsid protein {ECO:0000256|HAMAP-Rule:MF_04076};
Viral immunoevasion {ECO:0000256|RuleBase:RU361253};
Viral penetration into host nucleus {ECO:0000256|HAMAP-Rule:MF_04076};
Virion {ECO:0000256|HAMAP-Rule:MF_04076};
Virus entry into host cell {ECO:0000256|HAMAP-Rule:MF_04076}.
DOMAIN 1 27 Hep_core_N. {ECO:0000259|Pfam:PF08290}.
REGION 206 212 RNA binding. {ECO:0000256|HAMAP-
Rule:MF_04076}.
MOTIF 187 204 Bipartite nuclear localization signal.
{ECO:0000256|HAMAP-Rule:MF_04076}.
MOD_RES 184 184 Phosphoserine; by host.
{ECO:0000256|HAMAP-Rule:MF_04076}.
MOD_RES 191 191 Phosphoserine; by host.
{ECO:0000256|HAMAP-Rule:MF_04076}.
MOD_RES 199 199 Phosphoserine; by host.
{ECO:0000256|HAMAP-Rule:MF_04076}.
SEQUENCE 212 AA; 24333 MW; 2AF112E3B3DD0AE0 CRC64;
MQLFHLCLII SCSCPTVQAS KLCLGWLWGM DIDPYKEFGA SVELLSFLPS DFFPSIRDLL
DTASALYREA LESPEHCSPH HTALRQAILC WGELMNLATW VGSNLEDPAS RELVVSYVNV
NMGLKIRQLL WFHISCLTFG RETVLEYLVS FGVWIRTPTA YRPPNAPILS TLPETTVVRR
RGRSPRRRTP SPRRRRSQSP RRRRSQSRES QC


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