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Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain)

 W9AH92_9BACI            Unreviewed;       366 AA.
W9AH92;
14-MAY-2014, integrated into UniProtKB/TrEMBL.
14-MAY-2014, sequence version 1.
23-MAY-2018, entry version 24.
RecName: Full=Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209};
EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};
AltName: Full=Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209};
Name=carA_1 {ECO:0000313|EMBL:CDO02302.1};
Synonyms=carA {ECO:0000256|HAMAP-Rule:MF_01209};
ORFNames=BN988_00759 {ECO:0000313|EMBL:CDO02302.1},
OPHB3_2813 {ECO:0000313|EMBL:GAQ18857.1};
Oceanobacillus picturae.
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae;
Oceanobacillus.
NCBI_TaxID=171693 {ECO:0000313|EMBL:CDO02302.1, ECO:0000313|Proteomes:UP000028863};
[1] {ECO:0000313|EMBL:CDO02302.1, ECO:0000313|Proteomes:UP000028863}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=S1 {ECO:0000313|EMBL:CDO02302.1,
ECO:0000313|Proteomes:UP000028863};
Croce O., Lagier J.C., Raoult D.;
"Draft genome sequencing of Oceanobacillus picturae strain S1 isolated
from human gut.";
Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:CDO02302.1, ECO:0000313|Proteomes:UP000028863}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=S1 {ECO:0000313|EMBL:CDO02302.1,
ECO:0000313|Proteomes:UP000028863};
Urmite Genomes U.;
Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|Proteomes:UP000052946}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Heshi-B3 {ECO:0000313|Proteomes:UP000052946};
Akuzawa S., Nakagawa J., Kanekatsu T., Kanesaki Y., Suzuki T.;
"Draft Genome Sequence of Oceanobacillus picturae Heshi-B3 that Was
Isolated from Fermented Rice Bran with Aging Salted Mackerel, Which
Was Named Heshiko as Traditional Fermented Seafood in Japan.";
Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|EMBL:GAQ18857.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Heshi-B3 {ECO:0000313|EMBL:GAQ18857.1};
Akuzawa S., Nagaoka J., Kanekatsu M., Kanesaki Y., Suzuki T.;
"Draft Genome Sequence of Oceanobacillus picturae Heshi-B3, Isolated
from Fermented Rice Bran in a Traditional Japanese Seafood Dish.";
Genome Announc. 4:e01621-15(2016).
-!- CATALYTIC ACTIVITY: 2 ATP + L-glutamine + HCO(3)(-) + H(2)O = 2
ADP + phosphate + L-glutamate + carbamoyl phosphate.
{ECO:0000256|HAMAP-Rule:MF_01209}.
-!- PATHWAY: Amino-acid biosynthesis; L-arginine biosynthesis;
carbamoyl phosphate from bicarbonate: step 1/1.
{ECO:0000256|HAMAP-Rule:MF_01209}.
-!- PATHWAY: Pyrimidine metabolism; UMP biosynthesis via de novo
pathway; (S)-dihydroorotate from bicarbonate: step 1/3.
{ECO:0000256|HAMAP-Rule:MF_01209}.
-!- SUBUNIT: Composed of two chains; the small (or glutamine) chain
promotes the hydrolysis of glutamine to ammonia, which is used by
the large (or ammonia) chain to synthesize carbamoyl phosphate.
{ECO:0000256|HAMAP-Rule:MF_01209}.
-!- SIMILARITY: Belongs to the CarA family. {ECO:0000256|HAMAP-
Rule:MF_01209}.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:CDO02302.1}.
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EMBL; CCAX010000001; CDO02302.1; -; Genomic_DNA.
EMBL; BBXV01000032; GAQ18857.1; -; Genomic_DNA.
RefSeq; WP_036573196.1; NZ_CCAX010000001.1.
EnsemblBacteria; CDO02302; CDO02302; BN988_00759.
EnsemblBacteria; GAQ18857; GAQ18857; OPHB3_2813.
UniPathway; UPA00068; UER00171.
UniPathway; UPA00070; UER00115.
Proteomes; UP000028863; Unassembled WGS sequence.
Proteomes; UP000052946; Unassembled WGS sequence.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
GO; GO:0004088; F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity; IEA:UniProtKB-UniRule.
GO; GO:0006207; P:'de novo' pyrimidine nucleobase biosynthetic process; IEA:InterPro.
GO; GO:0044205; P:'de novo' UMP biosynthetic process; IEA:UniProtKB-UniPathway.
GO; GO:0006526; P:arginine biosynthetic process; IEA:UniProtKB-UniRule.
GO; GO:0006541; P:glutamine metabolic process; IEA:UniProtKB-KW.
CDD; cd01744; GATase1_CPSase; 1.
Gene3D; 3.40.50.880; -; 1.
Gene3D; 3.50.30.20; -; 1.
HAMAP; MF_01209; CPSase_S_chain; 1.
InterPro; IPR006274; CarbamoylP_synth_ssu.
InterPro; IPR002474; CarbamoylP_synth_ssu_N.
InterPro; IPR036480; CarbP_synth_ssu_N_sf.
InterPro; IPR029062; Class_I_gatase-like.
InterPro; IPR035686; CPSase_GATase1.
InterPro; IPR017926; GATASE.
Pfam; PF00988; CPSase_sm_chain; 1.
Pfam; PF00117; GATase; 1.
SMART; SM01097; CPSase_sm_chain; 1.
SUPFAM; SSF52021; SSF52021; 1.
SUPFAM; SSF52317; SSF52317; 1.
TIGRFAMs; TIGR01368; CPSaseIIsmall; 1.
PROSITE; PS51273; GATASE_TYPE_1; 1.
3: Inferred from homology;
Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_01209};
Arginine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01209};
ATP-binding {ECO:0000256|HAMAP-Rule:MF_01209};
Complete proteome {ECO:0000313|Proteomes:UP000028863};
Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_01209,
ECO:0000256|PROSITE-ProRule:PRU00605};
Ligase {ECO:0000256|HAMAP-Rule:MF_01209};
Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_01209};
Pyrimidine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01209};
Reference proteome {ECO:0000313|Proteomes:UP000028863}.
DOMAIN 172 359 Glutamine amidotransferase type-1.
{ECO:0000259|PROSITE:PS51273}.
REGION 1 171 CPSase. {ECO:0000256|HAMAP-
Rule:MF_01209}.
ACT_SITE 247 247 Nucleophile. {ECO:0000256|HAMAP-
Rule:MF_01209, ECO:0000256|PROSITE-
ProRule:PRU00605}.
ACT_SITE 332 332 {ECO:0000256|HAMAP-Rule:MF_01209,
ECO:0000256|PROSITE-ProRule:PRU00605}.
ACT_SITE 334 334 {ECO:0000256|HAMAP-Rule:MF_01209,
ECO:0000256|PROSITE-ProRule:PRU00605}.
SEQUENCE 366 AA; 40943 MW; 629FBB5D21F73D67 CRC64;
MNKKQLVLED GTVLNGEGFG SDRMMVGEIV FNTGMTGYQE IITDPSYCGQ IVTMTYPLAG
NYGINRDDFE TVHPFIHGFI VKETCEIPSN FRSEESLDSY LKAHDIPGVY GIDTRKLTKI
IRKHGTMKAI IADQSEDVET LLEKLHRKKL PTDQVPRTST IKPYVVPGRG RRIVLVDFGM
KHGILRELTK RNCHITVVPY NYSAENILRL KPDGIMLTNG PGDPKDVPEA INMIAELIGK
VSIFGICLGH QLLALACGAD TEKMKFGHRG SNHPVKDLDK EKTYITSQNH SYAVKEASLT
NTDLELTQIA LNDGTVEGVK HKHYPAFSVQ YHPESSPGPD DTNHLFDQFL ELIDEAQRKN
KEEAYA


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