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Carcinoembryonic antigen-related cell adhesion molecule 6 (Non-specific crossreacting antigen) (Normal cross-reacting antigen) (CD antigen CD66c)

 CEAM6_HUMAN             Reviewed;         344 AA.
P40199; Q13774; Q14920; Q53XP7;
01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
18-MAY-2010, sequence version 3.
28-FEB-2018, entry version 164.
RecName: Full=Carcinoembryonic antigen-related cell adhesion molecule 6;
AltName: Full=Non-specific crossreacting antigen;
AltName: Full=Normal cross-reacting antigen;
AltName: CD_antigen=CD66c;
Flags: Precursor;
Name=CEACAM6; Synonyms=NCA;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=3220478; DOI=10.1016/0888-7543(88)90160-7;
Barnett T., Goebel S.J., Nothdurft M.A., Elting J.J.;
"Carcinoembryonic antigen family: characterization of cDNAs coding for
NCA and CEA and suggestion of nonrandom sequence variation in their
conserved loop-domains.";
Genomics 3:59-66(1988).
[2]
NUCLEOTIDE SEQUENCE [MRNA], AND VARIANT VAL-239.
TISSUE=Lung carcinoma;
PubMed=3337731; DOI=10.1016/0006-291X(88)90490-1;
Tawaragi Y., Oikawa S., Matsuoka Y., Kosaki G., Nakazato H.;
"Primary structure of nonspecific crossreacting antigen (NCA), a
member of carcinoembryonic antigen (CEA) gene family, deduced from
cDNA sequence.";
Biochem. Biophys. Res. Commun. 150:89-96(1988).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=2830274;
Neumaier M., Zimmermann W., Shively L., Hinoda Y., Riggs A.D.,
Shively J.E.;
"Characterization of a cDNA clone for the nonspecific cross-reacting
antigen (NCA) and a comparison of NCA and carcinoembryonic antigen.";
J. Biol. Chem. 263:3202-3207(1988).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT VAL-239.
Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S.,
Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y.,
Phelan M., Farmer A.;
"Cloning of human full-length CDSs in BD Creator(TM) system donor
vector.";
Submitted (AUG-2003) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT VAL-239.
TISSUE=Tongue;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15057824; DOI=10.1038/nature02399;
Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J.,
Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M.,
Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E.,
Caenepeel S., Carrano A.V., Caoile C., Chan Y.M., Christensen M.,
Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C.,
Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M.,
Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T.,
Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H.,
Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S.,
Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J.,
Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M.,
Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J.,
Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D.,
Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A.,
Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I.,
Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E.,
Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M.,
Rubin E.M., Lucas S.M.;
"The DNA sequence and biology of human chromosome 19.";
Nature 428:529-535(2004).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[8]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT VAL-239.
TISSUE=Pancreas;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[9]
PROTEIN SEQUENCE OF 35-49.
PubMed=15340161; DOI=10.1110/ps.04682504;
Zhang Z., Henzel W.J.;
"Signal peptide prediction based on analysis of experimentally
verified cleavage sites.";
Protein Sci. 13:2819-2824(2004).
[10]
GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-197.
TISSUE=Saliva;
PubMed=16740002; DOI=10.1021/pr050492k;
Ramachandran P., Boontheung P., Xie Y., Sondej M., Wong D.T.,
Loo J.A.;
"Identification of N-linked glycoproteins in human saliva by
glycoprotein capture and mass spectrometry.";
J. Proteome Res. 5:1493-1503(2006).
[11]
GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-224.
TISSUE=Liver;
PubMed=19159218; DOI=10.1021/pr8008012;
Chen R., Jiang X., Sun D., Han G., Wang F., Ye M., Wang L., Zou H.;
"Glycoproteomics analysis of human liver tissue by combination of
multiple enzyme digestion and hydrazide chemistry.";
J. Proteome Res. 8:651-661(2009).
[12]
VARIANT [LARGE SCALE ANALYSIS] VAL-239, AND IDENTIFICATION BY MASS
SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Liver;
PubMed=18318008; DOI=10.1002/pmic.200700884;
Han G., Ye M., Zhou H., Jiang X., Feng S., Jiang X., Tian R., Wan D.,
Zou H., Gu J.;
"Large-scale phosphoproteome analysis of human liver tissue by
enrichment and fractionation of phosphopeptides with strong anion
exchange chromatography.";
Proteomics 8:1346-1361(2008).
-!- INTERACTION:
Q16568:CARTPT; NbExp=3; IntAct=EBI-4314501, EBI-4314526;
P13688:CEACAM1; NbExp=2; IntAct=EBI-4314501, EBI-4314481;
-!- SUBCELLULAR LOCATION: Cell membrane; Lipid-anchor, GPI-anchor.
-!- SIMILARITY: Belongs to the immunoglobulin superfamily. CEA family.
{ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; M29541; AAA59915.1; -; mRNA.
EMBL; M18728; AAA59907.1; -; mRNA.
EMBL; M18216; AAA51739.1; -; mRNA.
EMBL; BT009774; AAP88776.1; -; mRNA.
EMBL; AK312542; BAG35441.1; -; mRNA.
EMBL; AC011513; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH471126; EAW57061.1; -; Genomic_DNA.
EMBL; BC005008; AAH05008.1; -; mRNA.
CCDS; CCDS12585.1; -.
RefSeq; NP_002474.4; NM_002483.6.
UniGene; Hs.466814; -.
PDB; 4WHC; X-ray; 2.71 A; A/B=34-141.
PDB; 4WTZ; X-ray; 2.52 A; A/B/C/D/E/F=34-141.
PDB; 4Y8A; X-ray; 1.83 A; A/B=34-141.
PDB; 4YIQ; X-ray; 1.85 A; B/D=34-141.
PDBsum; 4WHC; -.
PDBsum; 4WTZ; -.
PDBsum; 4Y8A; -.
PDBsum; 4YIQ; -.
ProteinModelPortal; P40199; -.
SMR; P40199; -.
BioGrid; 110760; 7.
IntAct; P40199; 5.
STRING; 9606.ENSP00000199764; -.
iPTMnet; P40199; -.
PhosphoSitePlus; P40199; -.
BioMuta; CEACAM6; -.
DMDM; 296439410; -.
MaxQB; P40199; -.
PaxDb; P40199; -.
PeptideAtlas; P40199; -.
PRIDE; P40199; -.
DNASU; 4680; -.
Ensembl; ENST00000199764; ENSP00000199764; ENSG00000086548.
GeneID; 4680; -.
KEGG; hsa:4680; -.
UCSC; uc032hyc.2; human.
CTD; 4680; -.
DisGeNET; 4680; -.
EuPathDB; HostDB:ENSG00000086548.8; -.
GeneCards; CEACAM6; -.
HGNC; HGNC:1818; CEACAM6.
HPA; CAB008370; -.
HPA; HPA011041; -.
MIM; 163980; gene.
neXtProt; NX_P40199; -.
PharmGKB; PA26362; -.
eggNOG; ENOG410IFE1; Eukaryota.
eggNOG; ENOG410YR1P; LUCA.
HOGENOM; HOG000233417; -.
HOVERGEN; HBG007922; -.
InParanoid; P40199; -.
KO; K06499; -.
OrthoDB; EOG091G0AMM; -.
PhylomeDB; P40199; -.
TreeFam; TF336859; -.
Reactome; R-HSA-1566977; Fibronectin matrix formation.
Reactome; R-HSA-202733; Cell surface interactions at the vascular wall.
Reactome; R-HSA-6798695; Neutrophil degranulation.
ChiTaRS; CEACAM6; human.
GeneWiki; CEACAM6; -.
GenomeRNAi; 4680; -.
PRO; PR:P40199; -.
Proteomes; UP000005640; Chromosome 19.
Bgee; ENSG00000086548; -.
CleanEx; HS_CEACAM6; -.
ExpressionAtlas; P40199; baseline and differential.
Genevisible; P40199; HS.
GO; GO:0031225; C:anchored component of membrane; IEA:UniProtKB-KW.
GO; GO:0035577; C:azurophil granule membrane; TAS:Reactome.
GO; GO:0005615; C:extracellular space; IDA:UniProtKB.
GO; GO:0005887; C:integral component of plasma membrane; TAS:ProtInc.
GO; GO:0005886; C:plasma membrane; TAS:Reactome.
GO; GO:0007267; P:cell-cell signaling; TAS:ProtInc.
GO; GO:0050900; P:leukocyte migration; TAS:Reactome.
GO; GO:0043312; P:neutrophil degranulation; TAS:Reactome.
GO; GO:0030335; P:positive regulation of cell migration; IMP:BHF-UCL.
GO; GO:0008284; P:positive regulation of cell proliferation; IMP:BHF-UCL.
GO; GO:0007165; P:signal transduction; TAS:ProtInc.
Gene3D; 2.60.40.10; -; 3.
InterPro; IPR007110; Ig-like_dom.
InterPro; IPR036179; Ig-like_dom_sf.
InterPro; IPR013783; Ig-like_fold.
InterPro; IPR003599; Ig_sub.
InterPro; IPR003598; Ig_sub2.
InterPro; IPR013106; Ig_V-set.
Pfam; PF13895; Ig_2; 1.
Pfam; PF07686; V-set; 1.
SMART; SM00409; IG; 3.
SMART; SM00408; IGc2; 2.
SUPFAM; SSF48726; SSF48726; 3.
PROSITE; PS50835; IG_LIKE; 2.
1: Evidence at protein level;
3D-structure; Cell membrane; Complete proteome;
Direct protein sequencing; Disulfide bond; Glycoprotein; GPI-anchor;
Immunoglobulin domain; Lipoprotein; Membrane; Polymorphism;
Reference proteome; Repeat; Signal.
SIGNAL 1 34 {ECO:0000269|PubMed:15340161}.
CHAIN 35 320 Carcinoembryonic antigen-related cell
adhesion molecule 6.
/FTId=PRO_0000014568.
PROPEP 321 344 Removed in mature form. {ECO:0000250}.
/FTId=PRO_0000014569.
DOMAIN 35 142 Ig-like V-type.
DOMAIN 145 232 Ig-like C2-type 1.
DOMAIN 237 314 Ig-like C2-type 2.
LIPID 320 320 GPI-anchor amidated glycine.
{ECO:0000250}.
CARBOHYD 104 104 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 111 111 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 115 115 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 152 152 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 173 173 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 197 197 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:16740002}.
CARBOHYD 224 224 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19159218}.
CARBOHYD 256 256 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 274 274 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 288 288 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 292 292 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 309 309 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
DISULFID 167 215 {ECO:0000305}.
DISULFID 259 299 {ECO:0000305}.
VARIANT 239 239 G -> V (in dbSNP:rs11548735).
{ECO:0000244|PubMed:18318008,
ECO:0000269|PubMed:14702039,
ECO:0000269|PubMed:15489334,
ECO:0000269|PubMed:3337731,
ECO:0000269|Ref.4}.
/FTId=VAR_034680.
CONFLICT 138 138 F -> L (in Ref. 1; AAA59915).
{ECO:0000305}.
STRAND 37 45 {ECO:0000244|PDB:4Y8A}.
STRAND 51 57 {ECO:0000244|PDB:4Y8A}.
STRAND 62 72 {ECO:0000244|PDB:4Y8A}.
HELIX 75 77 {ECO:0000244|PDB:4Y8A}.
STRAND 78 83 {ECO:0000244|PDB:4Y8A}.
TURN 84 87 {ECO:0000244|PDB:4Y8A}.
STRAND 88 91 {ECO:0000244|PDB:4Y8A}.
STRAND 99 101 {ECO:0000244|PDB:4Y8A}.
STRAND 107 109 {ECO:0000244|PDB:4Y8A}.
HELIX 114 116 {ECO:0000244|PDB:4Y8A}.
STRAND 118 126 {ECO:0000244|PDB:4Y8A}.
STRAND 132 140 {ECO:0000244|PDB:4Y8A}.
SEQUENCE 344 AA; 37195 MW; 28469487A74C18A4 CRC64;
MGPPSAPPCR LHVPWKEVLL TASLLTFWNP PTTAKLTIES TPFNVAEGKE VLLLAHNLPQ
NRIGYSWYKG ERVDGNSLIV GYVIGTQQAT PGPAYSGRET IYPNASLLIQ NVTQNDTGFY
TLQVIKSDLV NEEATGQFHV YPELPKPSIS SNNSNPVEDK DAVAFTCEPE VQNTTYLWWV
NGQSLPVSPR LQLSNGNMTL TLLSVKRNDA GSYECEIQNP ASANRSDPVT LNVLYGPDGP
TISPSKANYR PGENLNLSCH AASNPPAQYS WFINGTFQQS TQELFIPNIT VNNSGSYMCQ
AHNSATGLNR TTVTMITVSG SAPVLSAVAT VGITIGVLAR VALI


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