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Casein kinase I homolog HRR25 (EC 2.7.11.1)

 HRR25_YEAST             Reviewed;         494 AA.
P29295; D6W3G5;
01-DEC-1992, integrated into UniProtKB/Swiss-Prot.
01-DEC-1992, sequence version 1.
28-MAR-2018, entry version 175.
RecName: Full=Casein kinase I homolog HRR25;
EC=2.7.11.1;
Name=HRR25; OrderedLocusNames=YPL204W;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=1887218; DOI=10.1126/science.1887218;
Hoekstra M.F., Liskay R.M., Ou A.C., Demaggio A.J., Burbee D.G.,
Heffron F.;
"HRR25, a putative protein kinase from budding yeast: association with
repair of damaged DNA.";
Science 253:1031-1034(1991).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169875;
Bussey H., Storms R.K., Ahmed A., Albermann K., Allen E., Ansorge W.,
Araujo R., Aparicio A., Barrell B.G., Badcock K., Benes V.,
Botstein D., Bowman S., Brueckner M., Carpenter J., Cherry J.M.,
Chung E., Churcher C.M., Coster F., Davis K., Davis R.W.,
Dietrich F.S., Delius H., DiPaolo T., Dubois E., Duesterhoeft A.,
Duncan M., Floeth M., Fortin N., Friesen J.D., Fritz C., Goffeau A.,
Hall J., Hebling U., Heumann K., Hilbert H., Hillier L.W.,
Hunicke-Smith S., Hyman R.W., Johnston M., Kalman S., Kleine K.,
Komp C., Kurdi O., Lashkari D., Lew H., Lin A., Lin D., Louis E.J.,
Marathe R., Messenguy F., Mewes H.-W., Mirtipati S., Moestl D.,
Mueller-Auer S., Namath A., Nentwich U., Oefner P., Pearson D.,
Petel F.X., Pohl T.M., Purnelle B., Rajandream M.A., Rechmann S.,
Rieger M., Riles L., Roberts D., Schaefer M., Scharfe M., Scherens B.,
Schramm S., Schroeder M., Sdicu A.-M., Tettelin H., Urrestarazu L.A.,
Ushinsky S., Vierendeels F., Vissers S., Voss H., Walsh S.V.,
Wambutt R., Wang Y., Wedler E., Wedler H., Winnett E., Zhong W.-W.,
Zollner A., Vo D.H., Hani J.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI.";
Nature 387:103-105(1997).
[3]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[4]
CHARACTERIZATION.
PubMed=1495994; DOI=10.1073/pnas.89.15.7008;
Demaggio A.J., Lindberg R.A., Hunter T., Hoekstra M.F.;
"The budding yeast HRR25 gene product is a casein kinase I isoform.";
Proc. Natl. Acad. Sci. U.S.A. 89:7008-7012(1992).
[5]
SUBCELLULAR LOCATION.
PubMed=12628929; DOI=10.1093/emboj/cdg121;
Schaefer T., Strauss D., Petfalski E., Tollervey D., Hurt E.;
"The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes.";
EMBO J. 22:1370-1380(2003).
[6]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-143, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
STRAIN=ADR376;
PubMed=17330950; DOI=10.1021/pr060559j;
Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J.,
Elias J.E., Gygi S.P.;
"Large-scale phosphorylation analysis of alpha-factor-arrested
Saccharomyces cerevisiae.";
J. Proteome Res. 6:1190-1197(2007).
[8]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=19779198; DOI=10.1126/science.1172867;
Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.;
"Global analysis of Cdk1 substrate phosphorylation sites provides
insights into evolution.";
Science 325:1682-1686(2009).
[9]
INTERACTION WITH HRI1.
PubMed=21460040; DOI=10.1101/gad.1998811;
Fasolo J., Sboner A., Sun M.G., Yu H., Chen R., Sharon D., Kim P.M.,
Gerstein M., Snyder M.;
"Diverse protein kinase interactions identified by protein microarrays
reveal novel connections between cellular processes.";
Genes Dev. 25:767-778(2011).
-!- FUNCTION: Associated with repair of damaged DNA and meiosis.
Phosphorylates serine and threonine. Can use casein as a
substrate.
-!- CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
-!- SUBUNIT: Interacts with HRI1. {ECO:0000269|PubMed:21460040}.
-!- INTERACTION:
Self; NbExp=3; IntAct=EBI-8536, EBI-8536;
P35193:ATG19; NbExp=2; IntAct=EBI-8536, EBI-29291;
Q12292:ATG34; NbExp=2; IntAct=EBI-8536, EBI-36362;
P15442:GCN2; NbExp=5; IntAct=EBI-8536, EBI-330;
P40065:MAM1; NbExp=3; IntAct=EBI-8536, EBI-22643;
P36003:NNK1; NbExp=4; IntAct=EBI-8536, EBI-9796;
P15303:SEC23; NbExp=5; IntAct=EBI-8536, EBI-16584;
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:12628929}.
Nucleus, nucleolus {ECO:0000269|PubMed:12628929}. Nucleus,
nucleoplasm {ECO:0000269|PubMed:12628929}.
-!- MISCELLANEOUS: Present with 10300 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- SIMILARITY: Belongs to the protein kinase superfamily. CK1 Ser/Thr
protein kinase family. Casein kinase I subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; M68605; AAA34687.1; -; Genomic_DNA.
EMBL; Z73560; CAA97918.1; -; Genomic_DNA.
EMBL; BK006949; DAA11231.1; -; Genomic_DNA.
PIR; A40860; A40860.
RefSeq; NP_015120.1; NM_001184018.1.
PDB; 4XHL; X-ray; 3.01 A; A=1-394.
PDB; 5CYZ; X-ray; 1.84 A; A=1-394.
PDB; 5CZO; X-ray; 2.89 A; A/B=1-394.
PDBsum; 4XHL; -.
PDBsum; 5CYZ; -.
PDBsum; 5CZO; -.
ProteinModelPortal; P29295; -.
SMR; P29295; -.
BioGrid; 35980; 572.
DIP; DIP-157N; -.
IntAct; P29295; 151.
MINT; P29295; -.
STRING; 4932.YPL204W; -.
iPTMnet; P29295; -.
MaxQB; P29295; -.
PaxDb; P29295; -.
PRIDE; P29295; -.
EnsemblFungi; YPL204W; YPL204W; YPL204W.
GeneID; 855897; -.
KEGG; sce:YPL204W; -.
EuPathDB; FungiDB:YPL204W; -.
SGD; S000006125; HRR25.
GeneTree; ENSGT00760000119040; -.
HOGENOM; HOG000182055; -.
InParanoid; P29295; -.
KO; K14758; -.
OMA; ESRVYKY; -.
OrthoDB; EOG092C30PR; -.
BioCyc; YEAST:G3O-34096-MONOMER; -.
BRENDA; 2.7.11.1; 984.
PRO; PR:P29295; -.
Proteomes; UP000002311; Chromosome XVI.
GO; GO:0005935; C:cellular bud neck; IDA:SGD.
GO; GO:0005934; C:cellular bud tip; IDA:SGD.
GO; GO:0000775; C:chromosome, centromeric region; IDA:SGD.
GO; GO:0005794; C:Golgi apparatus; IDA:SGD.
GO; GO:0033551; C:monopolin complex; IDA:SGD.
GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO; GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005634; C:nucleus; IDA:SGD.
GO; GO:0000407; C:phagophore assembly site; IDA:SGD.
GO; GO:0005886; C:plasma membrane; IDA:SGD.
GO; GO:0030688; C:preribosome, small subunit precursor; IDA:GO_Central.
GO; GO:0005816; C:spindle pole body; IDA:SGD.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0042802; F:identical protein binding; IPI:IntAct.
GO; GO:0004674; F:protein serine/threonine kinase activity; IDA:SGD.
GO; GO:0004713; F:protein tyrosine kinase activity; IDA:SGD.
GO; GO:0051455; P:attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation; IMP:SGD.
GO; GO:0000045; P:autophagosome assembly; IMP:SGD.
GO; GO:0030242; P:autophagy of peroxisome; IMP:SGD.
GO; GO:0006281; P:DNA repair; IMP:SGD.
GO; GO:0018105; P:peptidyl-serine phosphorylation; IBA:GO_Central.
GO; GO:0038083; P:peptidyl-tyrosine autophosphorylation; IDA:SGD.
GO; GO:0018108; P:peptidyl-tyrosine phosphorylation; IDA:SGD.
GO; GO:2000370; P:positive regulation of clathrin-dependent endocytosis; IMP:SGD.
GO; GO:0006468; P:protein phosphorylation; IDA:SGD.
GO; GO:0008360; P:regulation of cell shape; IBA:GO_Central.
GO; GO:0060628; P:regulation of ER to Golgi vesicle-mediated transport; IDA:SGD.
GO; GO:0032880; P:regulation of protein localization; IMP:SGD.
GO; GO:2001159; P:regulation of protein localization by the Cvt pathway; IMP:SGD.
GO; GO:0042273; P:ribosomal large subunit biogenesis; IMP:SGD.
GO; GO:0042274; P:ribosomal small subunit biogenesis; IDA:SGD.
GO; GO:0002098; P:tRNA wobble uridine modification; IMP:SGD.
GO; GO:0048280; P:vesicle fusion with Golgi apparatus; IMP:SGD.
InterPro; IPR011009; Kinase-like_dom_sf.
InterPro; IPR000719; Prot_kinase_dom.
InterPro; IPR017441; Protein_kinase_ATP_BS.
InterPro; IPR008271; Ser/Thr_kinase_AS.
Pfam; PF00069; Pkinase; 1.
SMART; SM00220; S_TKc; 1.
SUPFAM; SSF56112; SSF56112; 1.
PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
1: Evidence at protein level;
3D-structure; ATP-binding; Complete proteome; Cytoplasm; DNA damage;
DNA repair; Kinase; Nucleotide-binding; Nucleus; Phosphoprotein;
Reference proteome; Serine/threonine-protein kinase; Transferase.
CHAIN 1 494 Casein kinase I homolog HRR25.
/FTId=PRO_0000192859.
DOMAIN 9 278 Protein kinase. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
NP_BIND 15 23 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
COMPBIAS 395 494 Gln/Pro-rich.
ACT_SITE 128 128 Proton acceptor. {ECO:0000255|PROSITE-
ProRule:PRU00159, ECO:0000255|PROSITE-
ProRule:PRU10027}.
BINDING 38 38 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
MOD_RES 143 143 Phosphoserine.
{ECO:0000244|PubMed:17330950}.
STRAND 9 17 {ECO:0000244|PDB:5CYZ}.
STRAND 22 28 {ECO:0000244|PDB:5CYZ}.
TURN 29 31 {ECO:0000244|PDB:5CYZ}.
STRAND 34 41 {ECO:0000244|PDB:5CYZ}.
TURN 42 45 {ECO:0000244|PDB:4XHL}.
HELIX 49 58 {ECO:0000244|PDB:5CYZ}.
TURN 59 61 {ECO:0000244|PDB:5CYZ}.
STRAND 68 74 {ECO:0000244|PDB:5CYZ}.
STRAND 77 83 {ECO:0000244|PDB:5CYZ}.
STRAND 85 88 {ECO:0000244|PDB:5CYZ}.
HELIX 89 95 {ECO:0000244|PDB:5CYZ}.
TURN 96 98 {ECO:0000244|PDB:5CYZ}.
HELIX 102 121 {ECO:0000244|PDB:5CYZ}.
HELIX 131 133 {ECO:0000244|PDB:5CZO}.
STRAND 134 138 {ECO:0000244|PDB:5CYZ}.
HELIX 139 141 {ECO:0000244|PDB:5CYZ}.
STRAND 145 147 {ECO:0000244|PDB:5CYZ}.
TURN 159 161 {ECO:0000244|PDB:5CYZ}.
HELIX 177 179 {ECO:0000244|PDB:5CYZ}.
HELIX 182 185 {ECO:0000244|PDB:5CYZ}.
HELIX 192 208 {ECO:0000244|PDB:5CYZ}.
TURN 212 215 {ECO:0000244|PDB:5CYZ}.
HELIX 224 230 {ECO:0000244|PDB:5CYZ}.
HELIX 237 240 {ECO:0000244|PDB:5CYZ}.
TURN 241 243 {ECO:0000244|PDB:5CYZ}.
HELIX 246 255 {ECO:0000244|PDB:5CYZ}.
HELIX 266 273 {ECO:0000244|PDB:5CYZ}.
TURN 276 278 {ECO:0000244|PDB:5CYZ}.
HELIX 289 307 {ECO:0000244|PDB:5CYZ}.
HELIX 330 334 {ECO:0000244|PDB:5CYZ}.
HELIX 339 343 {ECO:0000244|PDB:5CYZ}.
TURN 345 347 {ECO:0000244|PDB:5CYZ}.
HELIX 361 364 {ECO:0000244|PDB:5CYZ}.
HELIX 367 373 {ECO:0000244|PDB:5CYZ}.
HELIX 379 386 {ECO:0000244|PDB:5CYZ}.
SEQUENCE 494 AA; 57340 MW; C4D3107A470E8BAF CRC64;
MDLRVGRKFR IGRKIGSGSF GDIYHGTNLI SGEEVAIKLE SIRSRHPQLD YESRVYRYLS
GGVGIPFIRW FGREGEYNAM VIDLLGPSLE DLFNYCHRRF SFKTVIMLAL QMFCRIQYIH
GRSFIHRDIK PDNFLMGVGR RGSTVHVIDF GLSKKYRDFN THRHIPYREN KSLTGTARYA
SVNTHLGIEQ SRRDDLESLG YVLIYFCKGS LPWQGLKATT KKQKYDRIME KKLNVSVETL
CSGLPLEFQE YMAYCKNLKF DEKPDYLFLA RLFKDLSIKL EYHNDHLFDW TMLRYTKAMV
EKQRDLLIEK GDLNANSNAA SASNSTDNKS ETFNKIKLLA MKKFPTHFHY YKNEDKHNPS
PEEIKQQTIL NNNAASSLPE ELLNALDKGM ENLRQQQPQQ QVQSSQPQPQ PQQLQQQPNG
QRPNYYPEPL LQQQQRDSQE QQQQVPMATT RATQYPPQIN SNNFNTNQAS VPPQMRSNPQ
QPPQDKPAGQ SIWL


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