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Chlorophyll a-b binding protein, chloroplastic

 Q9LMQ2_ARATH            Unreviewed;       258 AA.
Q9LMQ2;
01-OCT-2000, integrated into UniProtKB/TrEMBL.
01-OCT-2000, sequence version 1.
25-OCT-2017, entry version 130.
RecName: Full=Chlorophyll a-b binding protein, chloroplastic {ECO:0000256|RuleBase:RU363080};
Name=CHLOROPHYLL PROTEIN 24 {ECO:0000313|EMBL:AEE29369.1};
Synonyms=CP24 {ECO:0000313|EMBL:AEE29369.1},
LHCB6 {ECO:0000313|EMBL:AEE29369.1};
OrderedLocusNames=At1g15820 {ECO:0000313|Araport:AT1G15820,
ECO:0000313|EMBL:AAM10206.1},
At1g15820/F7H2.16 {ECO:0000313|EMBL:AAL38289.1};
ORFNames=F7H2.16 {ECO:0000313|EMBL:AAF82152.1},
F7H2_16 {ECO:0000313|EMBL:AEE29369.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1] {ECO:0000313|EMBL:AEE29369.1, ECO:0000313|Proteomes:UP000006548}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y., Lin X.,
Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J.,
Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G.,
Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H.,
Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H.,
Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T.,
Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G.,
Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[2] {ECO:0000313|EMBL:AAF82152.1}
NUCLEOTIDE SEQUENCE.
Liu S.X., Sakano H., Yu G., Etgu P., Lee J., Lenz C., Pham P.,
Toriumi M., Chan A., Chung M., Goldsmith A., Liu A., Smith A.,
Vaysberg M., Altafi H., Brooks S., Buehler E., Chao Q., Conn L.,
Conway A.B., Hansen N.F., Johnson-Hopson C., Khan S., Kim C., Lam B.,
Miranda M., Nguyen M., Palm C.J., Shinn P., Southwick A., Davis R.W.,
Ecker J.R., Federspiel N.A., Theologis A.;
"The sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1.";
Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|EMBL:AAL38289.1}
NUCLEOTIDE SEQUENCE.
Nguyen M., Karlin-Neumann G., Southwick A., Lam B., Miranda M.,
Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H.,
Cheuk R., Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J.,
Kim C., Lin J., Liu S.X., Narusaka M., Pham P.K., Sakano H.,
Sakurai T., Satou M., Seki M., Shinn P., Yamada K., Shinozaki K.,
Ecker J., Theologis A., Davis R.W.;
Submitted (DEC-2001) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|EMBL:AAM10206.1}
NUCLEOTIDE SEQUENCE.
Southwick A., Karlin-Neumann G., Nguyen M., Lam B., Miranda M.,
Palm C.J., Bowser L., Jones T., Banh J., Carninci P., Chen H.,
Cheuk R., Chung M.K., Hayashizaki Y., Ishida J., Kamiya A., Kawai J.,
Kim C., Lin J., Liu S.X., Narusaka M., Pham P.K., Sakano H.,
Sakurai T., Satou M., Seki M., Shinn P., Yamada K., Shinozaki K.,
Ecker J., Theologis A., Davis R.W.;
Submitted (FEB-2002) to the EMBL/GenBank/DDBJ databases.
[5] {ECO:0000313|EMBL:AAG48788.1}
NUCLEOTIDE SEQUENCE.
Yamada K., Dale J.M., Hsuan V.W., Onodera C.S., Quach H.L.,
Toriumi M., Wong C., Wu H.C., Yu G., Yuan S., Chen H., Cheuk R.,
Jones T., Kim C.J., Nguyen M., Palm C.J., Shinn P., Southwick A.,
Tripp M.G., Wu T., Davis R.W., Ecker J.R., Theologis A.;
"Arabidopsis Open Reading Frame (ORF) Clones.";
Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases.
[6] {ECO:0000213|PubMed:19376835}
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=19376835; DOI=10.1104/pp.109.138677;
Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
Grossmann J., Gruissem W., Baginsky S.;
"Large-scale Arabidopsis phosphoproteome profiling reveals novel
chloroplast kinase substrates and phosphorylation networks.";
Plant Physiol. 150:889-903(2009).
[7] {ECO:0000313|EMBL:AEE29369.1}
NUCLEOTIDE SEQUENCE.
TAIR;
Swarbreck D., Lamesch P., Wilks C., Huala E.;
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AEE29369.1, ECO:0000313|Proteomes:UP000006548}
GENOME REANNOTATION.
STRAIN=cv. Columbia {ECO:0000313|Proteomes:UP000006548};
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000213|PDB:5MDX}
STRUCTURE BY ELECTRON MICROSCOPY (5.30 ANGSTROMS) OF 48-257.
PubMed=28604725; DOI=10.1038/nplants.2017.80;
van Bezouwen L.S., Caffarri S., Kale R.S., Kouril R.,
Thunnissen A.W.H., Oostergetel G.T., Boekema E.J.;
"Subunit and chlorophyll organization of the plant photosystem II
supercomplex.";
Nat. Plants 3:17080-17080(2017).
-!- FUNCTION: The light-harvesting complex (LHC) functions as a light
receptor, it captures and delivers excitation energy to
photosystems with which it is closely associated.
{ECO:0000256|RuleBase:RU363080}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
{ECO:0000256|RuleBase:RU363080, ECO:0000256|SAAS:SAAS00540182}.
-!- SIMILARITY: Belongs to the light-harvesting chlorophyll a/b-
binding (LHC) protein family. {ECO:0000256|RuleBase:RU363080}.
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EMBL; AC034256; AAF82152.1; -; Genomic_DNA.
EMBL; AF332425; AAG48788.1; -; mRNA.
EMBL; AY065113; AAL38289.1; -; mRNA.
EMBL; AY081644; AAM10206.1; -; mRNA.
EMBL; CP002684; AEE29369.1; -; Genomic_DNA.
PIR; F86292; F86292.
RefSeq; NP_173034.1; NM_101450.5.
UniGene; At.15569; -.
UniGene; At.25300; -.
UniGene; At.72611; -.
UniGene; At.74824; -.
UniGene; At.74983; -.
PDB; 5MDX; EM; 5.30 A; 4/8=48-257.
PDBsum; 5MDX; -.
SMR; Q9LMQ2; -.
STRING; 3702.AT1G15820.1; -.
iPTMnet; Q9LMQ2; -.
DNASU; 838151; -.
EnsemblPlants; AT1G15820.1; AT1G15820.1; AT1G15820.
GeneID; 838151; -.
Gramene; AT1G15820.1; AT1G15820.1; AT1G15820.
KEGG; ath:AT1G15820; -.
Araport; AT1G15820; -.
TAIR; locus:2036209; AT1G15820.
eggNOG; ENOG410IG6Y; Eukaryota.
eggNOG; ENOG410ZGWX; LUCA.
HOGENOM; HOG000238033; -.
KO; K08917; -.
OMA; RTSENFA; -.
OrthoDB; EOG09360J56; -.
Proteomes; UP000006548; Chromosome 1.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0009941; C:chloroplast envelope; IDA:TAIR.
GO; GO:0009534; C:chloroplast thylakoid; IDA:TAIR.
GO; GO:0009535; C:chloroplast thylakoid membrane; IDA:TAIR.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0016020; C:membrane; IDA:TAIR.
GO; GO:0009522; C:photosystem I; IEA:UniProtKB-KW.
GO; GO:0009783; C:photosystem II antenna complex; NAS:TAIR.
GO; GO:0010287; C:plastoglobule; IDA:TAIR.
GO; GO:0009579; C:thylakoid; IDA:TAIR.
GO; GO:0016168; F:chlorophyll binding; IBA:GO_Central.
GO; GO:0031409; F:pigment binding; IBA:GO_Central.
GO; GO:0019904; F:protein domain specific binding; IPI:CAFA.
GO; GO:0010196; P:nonphotochemical quenching; IMP:TAIR.
GO; GO:0015979; P:photosynthesis; IMP:TAIR.
GO; GO:0009768; P:photosynthesis, light harvesting in photosystem I; IBA:GO_Central.
GO; GO:0018298; P:protein-chromophore linkage; IEA:UniProtKB-KW.
Gene3D; 1.10.3460.10; -; 1.
InterPro; IPR001344; Chloro_AB-bd_pln.
InterPro; IPR022796; Chloroa_b-bind.
InterPro; IPR023329; Chlorophyll_a/b-bd_dom.
PANTHER; PTHR21649; PTHR21649; 1.
Pfam; PF00504; Chloroa_b-bind; 1.
SUPFAM; SSF103511; SSF103511; 1.
1: Evidence at protein level;
3D-structure {ECO:0000213|PDB:5MDX};
Chlorophyll {ECO:0000256|RuleBase:RU363080,
ECO:0000256|SAAS:SAAS00012698};
Chloroplast {ECO:0000256|RuleBase:RU363080,
ECO:0000256|SAAS:SAAS00016974};
Chromophore {ECO:0000256|RuleBase:RU363080,
ECO:0000256|SAAS:SAAS00012698};
Complete proteome {ECO:0000313|Proteomes:UP000006548};
Membrane {ECO:0000256|SAAS:SAAS00016886};
Photosynthesis {ECO:0000256|RuleBase:RU363080};
Photosystem I {ECO:0000256|RuleBase:RU363080};
Photosystem II {ECO:0000256|RuleBase:RU363080};
Plastid {ECO:0000256|RuleBase:RU363080,
ECO:0000256|SAAS:SAAS00016974};
Reference proteome {ECO:0000313|Proteomes:UP000006548};
Thylakoid {ECO:0000256|RuleBase:RU363080,
ECO:0000256|SAAS:SAAS00012697};
Transmembrane {ECO:0000256|SAAS:SAAS00016886};
Transmembrane helix {ECO:0000256|SAAS:SAAS00016886}.
SEQUENCE 258 AA; 27523 MW; AF79E878006EADE4 CRC64;
MAMAVSGAVL SGLGSSFLTG GKRGATALAS GVGTGAQRVG RKTLIVAAAA AQPKKSWIPA
VKGGGNFLDP EWLDGSLPGD FGFDPLGLGK DPAFLKWYRE AELIHGRWAM AAVLGIFVGQ
AWSGVAWFEA GAQPDAIAPF SFGSLLGTQL LLMGWVESKR WVDFFNPDSQ SVEWATPWSK
TAENFANYTG DQGYPGGRFF DPLGLAGKNR DGVYEPDFEK LERLKLAEIK HSRLAMVAML
IFYFEAGQGK TPLGALGL


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