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Cholinergic receptor, nicotinic, alpha polypeptide 7, isoform CRA_a (Cholinergic receptor, nicotinic, alpha polypeptide 7, isoform CRA_c) (Neuronal nicotinic acetylcholine receptor alpha7 subunit)

 Q53YJ9_MOUSE            Unreviewed;       502 AA.
Q53YJ9;
24-MAY-2005, integrated into UniProtKB/TrEMBL.
24-MAY-2005, sequence version 1.
27-SEP-2017, entry version 127.
SubName: Full=Cholinergic receptor, nicotinic, alpha polypeptide 7, isoform CRA_a {ECO:0000313|EMBL:EDL07271.1};
SubName: Full=Cholinergic receptor, nicotinic, alpha polypeptide 7, isoform CRA_c {ECO:0000313|EMBL:EDL07273.1};
SubName: Full=Neuronal nicotinic acetylcholine receptor alpha7 subunit {ECO:0000313|EMBL:AAS90362.1};
Name=Chrna7 {ECO:0000313|EMBL:EDL07271.1, ECO:0000313|MGI:MGI:99779};
ORFNames=mCG_11830 {ECO:0000313|EMBL:EDL07271.1};
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1] {ECO:0000313|EMBL:BAE34205.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE34205.1};
TISSUE=Parthenogenote {ECO:0000313|EMBL:BAE34205.1};
PubMed=10349636; DOI=10.1016/S0076-6879(99)03004-9;
Carninci P., Hayashizaki Y.;
"High-efficiency full-length cDNA cloning.";
Methods Enzymol. 303:19-44(1999).
[2] {ECO:0000313|EMBL:BAE34205.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE34205.1};
TISSUE=Parthenogenote {ECO:0000313|EMBL:BAE34205.1};
PubMed=11042159; DOI=10.1101/gr.145100;
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
"Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes.";
Genome Res. 10:1617-1630(2000).
[3] {ECO:0000313|EMBL:BAE34205.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE34205.1};
TISSUE=Parthenogenote {ECO:0000313|EMBL:BAE34205.1};
PubMed=11076861; DOI=10.1101/gr.152600;
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M.,
Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A.,
Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K.,
Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M.,
Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J.,
Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
"RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer.";
Genome Res. 10:1757-1771(2000).
[4] {ECO:0000313|EMBL:BAE34205.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE34205.1};
TISSUE=Parthenogenote {ECO:0000313|EMBL:BAE34205.1};
PubMed=11217851; DOI=10.1038/35055500;
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium;
"Functional annotation of a full-length mouse cDNA collection.";
Nature 409:685-690(2001).
[5] {ECO:0000313|EMBL:BAE34205.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE34205.1};
TISSUE=Parthenogenote {ECO:0000313|EMBL:BAE34205.1};
PubMed=12466851; DOI=10.1038/nature01266;
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team;
"Analysis of the mouse transcriptome based on functional annotation of
60,770 full-length cDNAs.";
Nature 420:563-573(2002).
[6] {ECO:0000313|EMBL:EDL07271.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Mixed {ECO:0000313|EMBL:EDL07271.1};
PubMed=12040188; DOI=10.1126/science.1069193;
Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R.,
Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A.,
Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.,
Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K.,
Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J.,
Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R.,
Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H.,
Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A.,
Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A.,
Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C.,
Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C.,
Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B.,
Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E.,
Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R.,
Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C.,
Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L.,
Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S.,
Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L.,
Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R.,
Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R.,
Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J.,
Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L.,
Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C.,
Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A.,
Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H.,
Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L.,
Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M.,
Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K.,
Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S.,
Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J.,
Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G.,
Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.;
"A comparison of whole-genome shotgun-derived mouse chromosome 16 and
the human genome.";
Science 296:1661-1671(2002).
[7] {ECO:0000313|EMBL:AAS90362.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BALB/c {ECO:0000313|EMBL:AAS90362.1};
TISSUE=Brain {ECO:0000313|EMBL:AAS90362.1};
Groot-Kormelink P.J.;
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:BAE34205.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE34205.1};
TISSUE=Parthenogenote {ECO:0000313|EMBL:BAE34205.1};
Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K.,
Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S.,
Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N.,
Nishiyori H., Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D.,
Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A.,
Muramatsu M., Hayashizaki Y.;
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:BAE34205.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE34205.1};
TISSUE=Parthenogenote {ECO:0000313|EMBL:BAE34205.1};
The FANTOM Consortium;
Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group);
"The Transcriptional Landscape of the Mammalian Genome.";
Science 309:1559-1563(2005).
[10] {ECO:0000313|EMBL:BAE34205.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE34205.1};
TISSUE=Parthenogenote {ECO:0000313|EMBL:BAE34205.1};
PubMed=16141073; DOI=10.1126/science.1112009;
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium;
"Antisense Transcription in the Mammalian Transcriptome.";
Science 309:1564-1566(2005).
[11] {ECO:0000313|EMBL:EDL07271.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Mixed {ECO:0000313|EMBL:EDL07271.1};
Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
-!- SUBCELLULAR LOCATION: Cell junction, synapse, postsynaptic cell
membrane {ECO:0000256|SAAS:SAAS00548360}; Multi-pass membrane
protein {ECO:0000256|SAAS:SAAS00548360}.
-!- SUBCELLULAR LOCATION: Cell membrane
{ECO:0000256|SAAS:SAAS00548374}; Multi-pass membrane protein
{ECO:0000256|SAAS:SAAS00548374}.
-!- SIMILARITY: Belongs to the ligand-gated ion channel (TC 1.A.9)
family. {ECO:0000256|RuleBase:RU000687,
ECO:0000256|SAAS:SAAS00569405}.
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EMBL; AY574266; AAS90362.1; -; mRNA.
EMBL; AK157809; BAE34205.1; -; mRNA.
EMBL; CH466543; EDL07271.1; -; Genomic_DNA.
EMBL; CH466543; EDL07273.1; -; Genomic_DNA.
RefSeq; NP_031416.3; NM_007390.3.
UniGene; Mm.113464; -.
SMR; Q53YJ9; -.
GeneID; 11441; -.
KEGG; mmu:11441; -.
CTD; 1139; -.
MGI; MGI:99779; Chrna7.
eggNOG; KOG3645; Eukaryota.
eggNOG; ENOG410XQGR; LUCA.
HOVERGEN; HBG003756; -.
KO; K04809; -.
OMA; EAICNEW; -.
OrthoDB; EOG091G0R20; -.
Bgee; ENSMUSG00000030525; -.
GO; GO:0005892; C:acetylcholine-gated channel complex; IEA:Ensembl.
GO; GO:0016324; C:apical plasma membrane; IEA:Ensembl.
GO; GO:0030673; C:axolemma; IEA:Ensembl.
GO; GO:0030054; C:cell junction; IEA:UniProtKB-KW.
GO; GO:0009897; C:external side of plasma membrane; IEA:Ensembl.
GO; GO:0045211; C:postsynaptic membrane; IEA:UniProtKB-SubCell.
GO; GO:0042166; F:acetylcholine binding; IEA:Ensembl.
GO; GO:0022848; F:acetylcholine-gated cation-selective channel activity; IEA:Ensembl.
GO; GO:0001540; F:amyloid-beta binding; IEA:Ensembl.
GO; GO:0017081; F:chloride channel regulator activity; IEA:Ensembl.
GO; GO:0042803; F:protein homodimerization activity; IEA:Ensembl.
GO; GO:0015643; F:toxic substance binding; IEA:Ensembl.
GO; GO:0000187; P:activation of MAPK activity; IEA:Ensembl.
GO; GO:0008306; P:associative learning; IEA:Ensembl.
GO; GO:0042113; P:B cell activation; IEA:Ensembl.
GO; GO:0048149; P:behavioral response to ethanol; IEA:Ensembl.
GO; GO:0035095; P:behavioral response to nicotine; IEA:Ensembl.
GO; GO:0006816; P:calcium ion transport; IEA:Ensembl.
GO; GO:0006874; P:cellular calcium ion homeostasis; IEA:Ensembl.
GO; GO:0048813; P:dendrite morphogenesis; IEA:Ensembl.
GO; GO:0097061; P:dendritic spine organization; IEA:Ensembl.
GO; GO:0006897; P:endocytosis; IEA:Ensembl.
GO; GO:0030317; P:flagellated sperm motility; IEA:Ensembl.
GO; GO:0060112; P:generation of ovulation cycle rhythm; IEA:Ensembl.
GO; GO:0007613; P:memory; IEA:Ensembl.
GO; GO:1902430; P:negative regulation of amyloid-beta formation; IEA:Ensembl.
GO; GO:0050728; P:negative regulation of inflammatory response; IEA:Ensembl.
GO; GO:0032691; P:negative regulation of interleukin-1 beta production; IEA:Ensembl.
GO; GO:0032715; P:negative regulation of interleukin-6 production; IEA:Ensembl.
GO; GO:0001933; P:negative regulation of protein phosphorylation; IEA:Ensembl.
GO; GO:0032720; P:negative regulation of tumor necrosis factor production; IEA:Ensembl.
GO; GO:1902004; P:positive regulation of amyloid-beta formation; IEA:Ensembl.
GO; GO:0045766; P:positive regulation of angiogenesis; IEA:Ensembl.
GO; GO:0008284; P:positive regulation of cell proliferation; IEA:Ensembl.
GO; GO:1905920; P:positive regulation of CoA-transferase activity; IEA:Ensembl.
GO; GO:0070374; P:positive regulation of ERK1 and ERK2 cascade; IEA:Ensembl.
GO; GO:2000463; P:positive regulation of excitatory postsynaptic potential; IEA:Ensembl.
GO; GO:0001988; P:positive regulation of heart rate involved in baroreceptor response to decreased systemic arterial blood pressure; IEA:Ensembl.
GO; GO:1900273; P:positive regulation of long-term synaptic potentiation; IEA:Ensembl.
GO; GO:0033138; P:positive regulation of peptidyl-serine phosphorylation; IEA:Ensembl.
GO; GO:1905906; P:regulation of amyloid fibril formation; IEA:Ensembl.
GO; GO:1901214; P:regulation of neuron death; IEA:Ensembl.
GO; GO:0014061; P:regulation of norepinephrine secretion; IEA:Ensembl.
GO; GO:0032225; P:regulation of synaptic transmission, dopaminergic; IEA:Ensembl.
GO; GO:1905144; P:response to acetylcholine; IEA:Ensembl.
GO; GO:1904645; P:response to amyloid-beta; IEA:Ensembl.
GO; GO:0009409; P:response to cold; IEA:Ensembl.
GO; GO:0032094; P:response to food; IEA:Ensembl.
GO; GO:0001666; P:response to hypoxia; IEA:Ensembl.
GO; GO:0050893; P:sensory processing; IEA:Ensembl.
GO; GO:0050808; P:synapse organization; IEA:Ensembl.
GO; GO:0007271; P:synaptic transmission, cholinergic; IEA:Ensembl.
GO; GO:0042110; P:T cell activation; IEA:Ensembl.
Gene3D; 2.70.170.10; -; 1.
InterPro; IPR006202; Neur_chan_lig-bd.
InterPro; IPR006201; Neur_channel.
InterPro; IPR006029; Neurotrans-gated_channel_TM.
InterPro; IPR018000; Neurotransmitter_ion_chnl_CS.
InterPro; IPR002394; Nicotinic_acetylcholine_rcpt.
PANTHER; PTHR18945; PTHR18945; 1.
Pfam; PF02931; Neur_chan_LBD; 1.
Pfam; PF02932; Neur_chan_memb; 1.
PRINTS; PR00254; NICOTINICR.
PRINTS; PR00252; NRIONCHANNEL.
SUPFAM; SSF63712; SSF63712; 1.
SUPFAM; SSF90112; SSF90112; 1.
TIGRFAMs; TIGR00860; LIC; 1.
PROSITE; PS00236; NEUROTR_ION_CHANNEL; 1.
2: Evidence at transcript level;
Cell junction {ECO:0000256|SAAS:SAAS00032441};
Cell membrane {ECO:0000256|SAAS:SAAS00032539};
Disulfide bond {ECO:0000256|SAAS:SAAS00079022};
Ion channel {ECO:0000256|SAAS:SAAS00032596};
Ion transport {ECO:0000256|SAAS:SAAS00032596};
Ligand-gated ion channel {ECO:0000256|SAAS:SAAS00032596};
Membrane {ECO:0000256|SAAS:SAAS00032441,
ECO:0000256|SAAS:SAAS00032539, ECO:0000256|SAAS:SAAS00081645,
ECO:0000256|SAM:Phobius};
Postsynaptic cell membrane {ECO:0000256|SAAS:SAAS00032441};
Receptor {ECO:0000256|SAAS:SAAS00079193, ECO:0000313|EMBL:AAS90362.1};
Signal {ECO:0000256|SAM:SignalP};
Synapse {ECO:0000256|SAAS:SAAS00032441};
Transmembrane {ECO:0000256|SAAS:SAAS00081645,
ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAAS:SAAS00081645,
ECO:0000256|SAM:Phobius}; Transport {ECO:0000256|SAAS:SAAS00032596}.
SIGNAL 1 22 {ECO:0000256|SAM:SignalP}.
CHAIN 23 502 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5010843962.
TRANSMEM 231 255 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 262 280 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 292 317 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 470 490 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 27 230 Neur_chan_LBD.
{ECO:0000259|Pfam:PF02931}.
DOMAIN 237 487 Neur_chan_memb.
{ECO:0000259|Pfam:PF02932}.
SEQUENCE 502 AA; 56632 MW; C9312E5226D120E3 CRC64;
MCGRRGGIWL ALAAALLHVS LQGEFQRRLY KELVKNYNPL ERPVANDSQP LTVYFSLSLL
QIMDVDEKNQ VLTTNIWLQM SWTDHYLQWN MSEYPGVKNV RFPDGQIWKP DILLYNSADE
RFDATFHTNV LVNASGHCQY LPPGIFKSSC YIDVRWFPFD VQQCKLKFGS WSYGGWSLDL
QMQEADISSY IPNGEWDLMG IPGKRNEKFY ECCKEPYPDV TYTVTMRRRT LYYGLNLLIP
CVLISALALL VFLLPADSGE KISLGITVLL SLTVFMLLVA EIMPATSDSV PLIAQYFAST
MIIVGLSVVV TVIVLRYHHH DPDGGKMPKW TRIILLNWCA WFLRMKRPGE DKVRPACQHK
PRRCSLASVE LSAGAGPPTS NGNLLYIGFR GLEGMHCAPT PDSGVVCGRL ACSPTHDEHL
MHGTHPSDGD PDLAKILEEV RYIANRFRCQ DESEVICSEW KFAACVVDRL CLMAFSVFTI
ICTIGILMSA PNFVEAVSKD FA


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