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Chromosome associated protein D3, isoform A (Chromosome associated protein D3, isoform B)

 Q9VMQ4_DROME            Unreviewed;      1267 AA.
Q9VMQ4;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-OCT-2002, sequence version 2.
25-OCT-2017, entry version 126.
SubName: Full=Chromosome associated protein D3, isoform A {ECO:0000313|EMBL:AAF52258.2};
SubName: Full=Chromosome associated protein D3, isoform B {ECO:0000313|EMBL:ACZ94178.1};
Name=Cap-D3 {ECO:0000313|EMBL:AAF52258.2,
ECO:0000313|FlyBase:FBgn0051989};
Synonyms=BcDNA:RE74832 {ECO:0000313|EMBL:AAF52258.2},
CAP-D2 {ECO:0000313|EMBL:AAF52258.2},
CAP-D3 {ECO:0000313|EMBL:AAF52258.2},
cap-D3 {ECO:0000313|EMBL:AAF52258.2},
CapD3 {ECO:0000313|EMBL:AAF52258.2},
CG14019 {ECO:0000313|EMBL:AAF52258.2},
CG31989 {ECO:0000313|EMBL:AAF52258.2,
ECO:0000313|FlyBase:FBgn0051989},
CG6922 {ECO:0000313|EMBL:AAF52258.2},
dCap-D3 {ECO:0000313|EMBL:AAF52258.2},
Dmel\CG31989 {ECO:0000313|EMBL:AAF52258.2};
ORFNames=Dmel_CG31989 {ECO:0000313|EMBL:AAF52258.2};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF52258.2, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF52258.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF52258.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF52258.2, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF52258.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AAF52258.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAF52258.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AAF52258.2}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AAF52258.2}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF52258.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[10] {ECO:0000313|EMBL:AAF52258.2, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[11] {ECO:0000313|EMBL:AAF52258.2}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-----------------------------------------------------------------------
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EMBL; AE014134; AAF52258.2; -; Genomic_DNA.
EMBL; AE014134; ACZ94178.1; -; Genomic_DNA.
RefSeq; NP_001162887.1; NM_001169416.2.
RefSeq; NP_608935.2; NM_135091.4.
IntAct; Q9VMQ4; 4.
STRING; 7227.FBpp0078730; -.
EnsemblMetazoa; FBtr0079097; FBpp0078730; FBgn0051989.
EnsemblMetazoa; FBtr0301318; FBpp0290533; FBgn0051989.
GeneID; 33778; -.
KEGG; dme:Dmel_CG31989; -.
UCSC; CG31989-RA; d. melanogaster.
CTD; 33778; -.
FlyBase; FBgn0051989; Cap-D3.
eggNOG; KOG0413; Eukaryota.
eggNOG; ENOG410XSGK; LUCA.
KO; K11491; -.
OMA; NERMTNW; -.
OrthoDB; EOG091G00PU; -.
GenomeRNAi; 33778; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0051989; -.
ExpressionAtlas; Q9VMQ4; differential.
GO; GO:0000779; C:condensed chromosome, centromeric region; IBA:GO_Central.
GO; GO:0000796; C:condensin complex; ISS:FlyBase.
GO; GO:0000799; C:nuclear condensin complex; IBA:GO_Central.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0003682; F:chromatin binding; IDA:FlyBase.
GO; GO:0042393; F:histone binding; IBA:GO_Central.
GO; GO:0035064; F:methylated histone binding; ISS:FlyBase.
GO; GO:0051276; P:chromosome organization; IMP:FlyBase.
GO; GO:0051304; P:chromosome separation; IGI:FlyBase.
GO; GO:0007060; P:male meiosis chromosome segregation; IMP:FlyBase.
GO; GO:0010032; P:meiotic chromosome condensation; IBA:GO_Central.
GO; GO:0007076; P:mitotic chromosome condensation; IBA:GO_Central.
GO; GO:0045950; P:negative regulation of mitotic recombination; IMP:FlyBase.
GO; GO:1903775; P:regulation of DNA double-strand break processing; IMP:FlyBase.
Gene3D; 1.25.10.10; -; 3.
InterPro; IPR011989; ARM-like.
InterPro; IPR016024; ARM-type_fold.
InterPro; IPR026971; CND1/NCAPD3.
InterPro; IPR012371; NCAPD3.
PANTHER; PTHR14222; PTHR14222; 1.
PIRSF; PIRSF036508; Condns_HCP-6; 1.
SUPFAM; SSF48371; SSF48371; 6.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Proteomics identification {ECO:0000213|PeptideAtlas:Q9VMQ4};
Reference proteome {ECO:0000313|Proteomes:UP000000803}.
SEQUENCE 1267 AA; 145251 MW; 4246D5B9A72A33F4 CRC64;
MSDFHRIFGD LRVYYEPNVQ WVDVEEWLYG EEAEGSVLQQ RAEKFWTMAM CLQDGGHQET
QLQLLRDLSA IIRAMRDENQ ASYSNTHDNW SNLIGFSPAL GYLTYIYSLV SLVVLPEHVQ
QAAPQQLNEN INMQLALNAA TTYLLTLTIP GAKIFGVFDE DVIEQVLKVF RLLEMNNNKS
LRASMIWMFF LTICDDLKIV FRYVHFKEHL KTRDRIIRCL LEVLYMNFKM GYQNTCAPGL
HGKCFELFSE IANEHNGDVY ETLHLIMRQT FPMHVYTDSP QMIAYGRRGA MQSGEHISDW
FIQLIDKYPD IVNRILHFYI ECVVSNPIKA WKSNDEKVAI GYAAKYDRVL FTKCNKSCAD
YVLEAVKADD AVGIQIRALD LIEKILLQES EVEWSIFRHE VSDVPREVPL LREVLRCLND
RTLTVRRKAC QVLILALRQG SPMTKKILQE SIRFVQFDDT DVEALAEPSA QQNELRFEKP
GIVQYAFSFQ GHEQLETEVK NLPQTVYQRF LAADNGLARS AGIALLERLV LVNPLIIYNT
NFVKETSLLA VDRLSSVRKS ALETIETLLE AYSNCFALIC VYCRIWACLM SDEDVALQKL
AISSFDRMVL KNIQPLEYSN EAKHFMPWRI ISTLLMTQPR AYLQERFAVL LERETIVTPR
LVNVIISHLS TSMATDAWGL LLFLSSRITN NMDALIGIFN GLSSYNMKSN QFLALQLITG
CLRNFSKPAL NQLFQKLLNA LRTGSIWLGI ISSAVNLLNQ IHHLSTSQSP TIASEMPYWQ
LSLLEDLVEG ILSSAQNFQE EYARLQCLLG AYTELIVMVP QDVDNRIVSI VFKYLQECTK
LCESEFDSDN ERMTNWMIVI AGRLSLRDNH LANSASKLYI TILTKNDRPQ IINTTLIALN
DLGKKHPSIL ESNFQAILSK LQSKFAMTRV RTFRCVKDVI LSGNIKLKGP ILISMLAALV
DESAEVAREA DAFFTRYKKL YNKMLFDHCL KECPFDLNDQ AILRGVRTNG NYKSPLKGSQ
MAKKRRLLYN HIMSSMDENV LLLYFGQLKL LAEKTRDQAF INNPDALIVV QDMLFIMRRI
CYCTKGMGKE KNSRGEGDNI DEGEDASSEP ATPPTRPEAG EATSRGRGRK ADMSEEPLKQ
LERCLRFVEE THRNIVPVMS PELSHNFESF CRAMAMRFPN YIEFAQPAQF WRQFRSSAKA
PRASRSKRRR MEEGEVESHE EHESESDSDS ELPLDRHKTT PTASRLSQRK TSCDMLVTEL
IFQPPDW


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