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Clathrin heavy chain

 A0A0H5SLM6_BRUMA        Unreviewed;      1694 AA.
A0A0H5SLM6;
14-OCT-2015, integrated into UniProtKB/TrEMBL.
14-OCT-2015, sequence version 1.
12-SEP-2018, entry version 23.
RecName: Full=Clathrin heavy chain {ECO:0000256|PIRNR:PIRNR002290};
Name=Bma-chc-1 {ECO:0000313|EMBL:CRZ24652.1};
Synonyms=Bm1_21545 {ECO:0000313|WBParaSite:Bm13797};
ORFNames=BM_Bm13797 {ECO:0000313|EMBL:CRZ24652.1};
Brugia malayi (Filarial nematode worm).
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Spirurida;
Spiruromorpha; Filarioidea; Onchocercidae; Brugia.
NCBI_TaxID=6279 {ECO:0000313|EMBL:CRZ24652.1};
[1] {ECO:0000313|EMBL:CRZ24652.1, ECO:0000313|Proteomes:UP000006672, ECO:0000313|WBParaSite:Bm13797}
NUCLEOTIDE SEQUENCE.
STRAIN=FR3 {ECO:0000313|EMBL:CRZ24652.1,
ECO:0000313|Proteomes:UP000006672};
PubMed=17885136; DOI=10.1126/science.1145406;
Ghedin E., Wang S., Spiro D., Caler E., Zhao Q., Crabtree J.,
Allen J.E., Delcher A.L., Guiliano D.B., Miranda-Saavedra D.,
Angiuoli S.V., Creasy T., Amedeo P., Haas B., El-Sayed N.M.,
Wortman J.R., Feldblyum T., Tallon L., Schatz M., Shumway M., Koo H.,
Salzberg S.L., Schobel S., Pertea M., Pop M., White O., Barton G.J.,
Carlow C.K., Crawford M.J., Daub J., Dimmic M.W., Estes C.F.,
Foster J.M., Ganatra M., Gregory W.F., Johnson N.M., Jin J.,
Komuniecki R., Korf I., Kumar S., Laney S., Li B.W., Li W.,
Lindblom T.H., Lustigman S., Ma D., Maina C.V., Martin D.M.,
McCarter J.P., McReynolds L., Mitreva M., Nutman T.B., Parkinson J.,
Peregrin-Alvarez J.M., Poole C., Ren Q., Saunders L., Sluder A.E.,
Smith K., Stanke M., Unnasch T.R., Ware J., Wei A.D., Weil G.,
Williams D.J., Zhang Y., Williams S.A., Fraser-Liggett C., Slatko B.,
Blaxter M.L., Scott A.L.;
"Draft genome of the filarial nematode parasite Brugia malayi.";
Science 317:1756-1760(2007).
[2] {ECO:0000313|EMBL:CRZ24652.1}
NUCLEOTIDE SEQUENCE.
STRAIN=FR3 {ECO:0000313|EMBL:CRZ24652.1};
Gao Y.W., Fan S.T., Sun H.T., Wang Z., Gao X.L., Li Y.G., Wang T.C.,
Zhang K., Xu W.W., Yu Z.J., Xia X.Z.;
Submitted (DEC-2012) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|WBParaSite:Bm13797}
IDENTIFICATION.
WormBaseParasite;
Submitted (SEP-2015) to UniProtKB.
-!- FUNCTION: Clathrin is the major protein of the polyhedral coat of
coated pits and vesicles. {ECO:0000256|PIRNR:PIRNR002290}.
-!- SUBCELLULAR LOCATION: Cytoplasmic vesicle membrane
{ECO:0000256|PIRNR:PIRNR002290}; Peripheral membrane protein
{ECO:0000256|PIRNR:PIRNR002290}; Cytoplasmic side
{ECO:0000256|PIRNR:PIRNR002290}. Membrane, coated pit
{ECO:0000256|PIRNR:PIRNR002290}; Peripheral membrane protein
{ECO:0000256|PIRNR:PIRNR002290}; Cytoplasmic side
{ECO:0000256|PIRNR:PIRNR002290}.
-!- SIMILARITY: Belongs to the clathrin heavy chain family.
{ECO:0000256|PIRNR:PIRNR002290}.
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EMBL; LN856972; CRZ24652.1; -; Genomic_DNA.
RefSeq; XP_001895763.1; XM_001895728.1.
EnsemblMetazoa; Bm13797; Bm13797; WBGene00234058.
GeneID; 6099212; -.
KEGG; bmy:Bm1_21545; -.
WBParaSite; Bm13797; Bm13797; WBGene00234058.
CTD; 6099212; -.
KO; K04646; -.
OMA; VQQCTAF; -.
Proteomes; UP000006672; Unassembled WGS sequence.
GO; GO:0030132; C:clathrin coat of coated pit; IEA:InterPro.
GO; GO:0030130; C:clathrin coat of trans-Golgi network vesicle; IEA:InterPro.
GO; GO:0071439; C:clathrin complex; IEA:InterPro.
GO; GO:0032051; F:clathrin light chain binding; IEA:InterPro.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0048268; P:clathrin coat assembly; IEA:InterPro.
GO; GO:0006886; P:intracellular protein transport; IEA:UniProtKB-UniRule.
GO; GO:0016192; P:vesicle-mediated transport; IEA:InterPro.
Gene3D; 1.25.40.10; -; 4.
Gene3D; 2.130.10.110; -; 1.
InterPro; IPR016024; ARM-type_fold.
InterPro; IPR000547; Clathrin_H-chain/VPS_repeat.
InterPro; IPR015348; Clathrin_H-chain_linker_core.
InterPro; IPR016025; Clathrin_H-chain_N.
InterPro; IPR022365; Clathrin_H-chain_propeller_rpt.
InterPro; IPR016341; Clathrin_heavy_chain.
InterPro; IPR011990; TPR-like_helical_dom_sf.
Pfam; PF00637; Clathrin; 7.
Pfam; PF09268; Clathrin-link; 1.
Pfam; PF01394; Clathrin_propel; 3.
PIRSF; PIRSF002290; Clathrin_H_chain; 1.
SMART; SM00299; CLH; 7.
SUPFAM; SSF48371; SSF48371; 6.
SUPFAM; SSF50989; SSF50989; 1.
PROSITE; PS50236; CHCR; 7.
3: Inferred from homology;
Coated pit {ECO:0000256|PIRNR:PIRNR002290};
Complete proteome {ECO:0000313|Proteomes:UP000006672};
Cytoplasmic vesicle {ECO:0000256|PIRNR:PIRNR002290};
Membrane {ECO:0000256|PIRNR:PIRNR002290};
Reference proteome {ECO:0000313|Proteomes:UP000006672}.
DOMAIN 331 354 Clathrin-link.
{ECO:0000259|Pfam:PF09268}.
REPEAT 539 685 CHCR. {ECO:0000256|PROSITE-
ProRule:PRU01006}.
REPEAT 688 830 CHCR. {ECO:0000256|PROSITE-
ProRule:PRU01006}.
REPEAT 835 974 CHCR. {ECO:0000256|PROSITE-
ProRule:PRU01006}.
REPEAT 981 1126 CHCR. {ECO:0000256|PROSITE-
ProRule:PRU01006}.
REPEAT 1130 1271 CHCR. {ECO:0000256|PROSITE-
ProRule:PRU01006}.
REPEAT 1276 1422 CHCR. {ECO:0000256|PROSITE-
ProRule:PRU01006}.
REPEAT 1425 1568 CHCR. {ECO:0000256|PROSITE-
ProRule:PRU01006}.
SEQUENCE 1694 AA; 193347 MW; F903F074FF3DC485 CRC64;
MSSLLPIKFQ EHILLQSLGI NAANIGFATL TMESDKFIVV REKVGENAQV VIVDMNDVNN
PLRRPITADS VIMNPATKVL ALKSSRTLQI FNIELKTKMK AYNMPEDVIF WKWVNVNTIA
LVSETAAYHW SLQGDSPPVK MFERHSTLSG FQIINYRADA ECKWLLVIGI AAKDNRVVGA
MQLYSTERKV SQPIEGHAAC FVSFKTEGNP HPSNLFCFSV RTIQGGKLHV IEIGSPPAGN
QPFQKKQVEV YYPAEAATDF PVAMQASSKH GIIYLVTKYG YVHLYDIETA VCIYMNRISS
ETIFVTAEYT ATEGIIGVNR KGQVLSVSID EQNMIPYVTQ TLQNPELALK LAVRCDLPGA
EELFVRKFNL LFGNGNYAEA AKVAATAPQG ILRTPQTIQK FQQCPHTGGG PSPLLQYFGI
LLDQGQLNKY ETLELCRPVL AQGRKQLLEK WLTEGKLECT EELGDLVRPH DVNVALSVYL
RGNVPHKVVQ CFAETGQFDK IILYAKKVNF EPDYLFQLRQ VLRSNPEMGA KFAQMLVSEG
ENEPLADINQ IVGCFEEVQA VQPCTSFLLE VLKSDKESEG HLQTKLLEMN LLYAPQVADA
ILGNQMFHHY DRATIGQLCE KAGLLQRALE HFTDLYDIKR TVVHTQHLKP DWLVNYFGQL
SVEDSLECLK AMLQTNMRQN LQIVVQIATK YHEQLTTHAL IDLFESFKSY EGLFYFLGSI
VNFSQDPEVH FKYIQAATRT GQIKEVERIC RESNCYEAER VKNYLKEAKL TDQLPLIIVC
DRHDMVHDLV LYLYRNNLQK YIEVFVQKVN PARLPIVVGG LLDVDCSEDA IKQLIINTRG
KFDIDELVDE VEKRNRLKLL APWLEMRVQE GTVDPATHNA LAKIYIDANN NPERFLRENP
YYDSRIVGKY CEKRDPHFAC LAYERGQCDA ELVNVCNENS LFKNLARYLV KRRDFPLWAQ
VLAEDNQHRR QLIDQVVQTA LSETQDPEDI SATVKAFMAA DLPNELIELL EKIVLDNSVF
SEHRNLQNLL ILTAIKADRT RVMEYIQKLD NYDAPDIANI AVSNQLYEEA FAIFKKFDVN
TAAINVLIDN VSNLDRAYEF AERCNEPGVW ASLAKAQLKE GLVKEAVDSF IKADDPTAYM
EVVSKCSETG NWEDLVRYLQ MARKKSRESY IETELVYAYA KTNRLADLEE FISGPNHAQI
QQIGDRCFDS GMYEAAKILH NNISNFAKLS VTLVRLNEFQ GAVDAARKAN STKTWKQVCF
ACVDNEEFRL AQMCGLHIVV HADELEELIN YYQDRGYFEE LIGLLEAALG LERAHMGMFT
ELAILYSKYK AEKMREHLEL FWSRVNIPKV LRAAEQAHLW SELVFLYDKY EEYDNAAQTM
MQHPVEAWRE QHFKEVITKV ANIELYYKAM QFYLDYKPML LNDLLLVLTP RLDHSRTVSF
FAKLNQLPLV KPYLRQVQTQ NNKSVNEALN QVLIDEEDYT GLRSSIDAYD NFDNITLAQQ
LEKHELLEFR RISAYLYRGN NRWKQSVELC KKDKLYKDAM EYAAESRQPE IAEELLAYFL
ENKLHDCFAA SLYQMYDLLH PDVILELAWK HKIMDFAMPY MIQVMRDYHS RIGKLERAEA
ERKEEIQGNQ QPNGSMMEPQ LMLTFPGGAP ISSVPQMSAA YGGVTVSSTP YGATVPATNA
YGTPMYPSSG SYAM


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