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Coatomer subunit alpha

 Q9W0B8_DROME            Unreviewed;      1234 AA.
Q9W0B8;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-MAY-2000, sequence version 1.
10-OCT-2018, entry version 176.
RecName: Full=Coatomer subunit alpha {ECO:0000256|PIRNR:PIRNR003354};
Name=alphaCOP {ECO:0000313|EMBL:AAF47534.1,
ECO:0000313|FlyBase:FBgn0025725};
Synonyms=alpha-COP {ECO:0000313|EMBL:AAF47534.1},
alpha-Cop {ECO:0000313|FlyBase:FBgn0025725},
alphaCop {ECO:0000313|EMBL:AAF47534.1},
Dmel\CG7961 {ECO:0000313|EMBL:AAF47534.1};
ORFNames=CG7961 {ECO:0000313|EMBL:AAF47535.1,
ECO:0000313|FlyBase:FBgn0025725},
Dmel_CG7961 {ECO:0000313|EMBL:AAF47534.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF47534.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF47534.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF47534.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF47534.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF47534.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[5] {ECO:0000313|EMBL:AAF47534.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAL68241.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Berkeley {ECO:0000313|EMBL:AAL68241.1};
Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J.,
Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E.,
George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G.,
Miranda A., Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S.,
Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M.,
Celniker S.;
Submitted (JAN-2002) to the EMBL/GenBank/DDBJ databases.
[7] {ECO:0000313|EMBL:AAF47534.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[8] {ECO:0000313|EMBL:AAF47534.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF47534.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:AAF47534.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[11] {ECO:0000313|EMBL:AAF47534.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[12] {ECO:0000313|EMBL:AAF47534.1}
NUCLEOTIDE SEQUENCE.
PubMed=26109357;
FlyBase Consortium;
Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B.,
St Pierre S.E., Gramates L.S., Zhou P., Schroeder A.J., Falls K.,
Strelets V., Russo S.M., Gelbart W.M.;
"Gene Model Annotations for Drosophila melanogaster: Impact of High-
Throughput Data.";
G3 (Bethesda) 5:1721-1736(2015).
[13] {ECO:0000313|EMBL:AAF47534.1}
NUCLEOTIDE SEQUENCE.
PubMed=26109356;
FlyBase Consortium;
Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B.,
St Pierre S.E., Zhou P., Schroeder A.J., Falls K., Emmert D.B.,
Russo S.M., Gelbart W.M.;
"Gene Model Annotations for Drosophila melanogaster: The Rule-
Benders.";
G3 (Bethesda) 5:1737-1749(2015).
[14] {ECO:0000313|EMBL:AAF47534.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: The coatomer is a cytosolic protein complex that binds
to dilysine motifs and reversibly associates with Golgi non-
clathrin-coated vesicles, which further mediate biosynthetic
protein transport from the ER, via the Golgi up to the trans Golgi
network. {ECO:0000256|PIRNR:PIRNR003354}.
-!- SUBUNIT: Oligomeric complex that consists of at least the alpha,
beta, beta', gamma, delta, epsilon and zeta subunits.
{ECO:0000256|PIRNR:PIRNR003354}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|PIRNR:PIRNR003354}.
Golgi apparatus membrane {ECO:0000256|PIRNR:PIRNR003354};
Peripheral membrane protein {ECO:0000256|PIRNR:PIRNR003354}.
-----------------------------------------------------------------------
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EMBL; AE014296; AAF47534.1; -; Genomic_DNA.
EMBL; AE014296; AAF47535.1; -; Genomic_DNA.
EMBL; AY075425; AAL68241.1; -; mRNA.
RefSeq; NP_477395.1; NM_058047.5.
RefSeq; NP_728648.1; NM_167908.3.
UniGene; Dm.2217; -.
IntAct; Q9W0B8; 8.
STRING; 7227.FBpp0072693; -.
EnsemblMetazoa; FBtr0072811; FBpp0072693; FBgn0025725.
EnsemblMetazoa; FBtr0072812; FBpp0072694; FBgn0025725.
GeneID; 38199; -.
KEGG; dme:Dmel_CG7961; -.
UCSC; CG7961-RA; d. melanogaster.
CTD; 38199; -.
FlyBase; FBgn0025725; alphaCOP.
eggNOG; KOG0292; Eukaryota.
eggNOG; ENOG410XPZS; LUCA.
GeneTree; ENSGT00920000149070; -.
KO; K05236; -.
OMA; GHDNGVM; -.
OrthoDB; EOG091G00SH; -.
ChiTaRS; alphaCOP; fly.
GenomeRNAi; 38199; -.
Proteomes; UP000000803; Chromosome 3L.
Bgee; FBgn0025725; Expressed in 52 organ(s), highest expression level in embryonic/larval hemocyte (Drosophila).
GO; GO:0030126; C:COPI vesicle coat; IDA:FlyBase.
GO; GO:0005793; C:endoplasmic reticulum-Golgi intermediate compartment; IDA:FlyBase.
GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0000902; P:cell morphogenesis; IMP:FlyBase.
GO; GO:0006888; P:ER to Golgi vesicle-mediated transport; IBA:GO_Central.
GO; GO:0006891; P:intra-Golgi vesicle-mediated transport; IBA:GO_Central.
GO; GO:0006886; P:intracellular protein transport; IBA:GO_Central.
GO; GO:0007112; P:male meiosis cytokinesis; IMP:FlyBase.
GO; GO:1905345; P:protein localization to cleavage furrow; IMP:FlyBase.
GO; GO:0010883; P:regulation of lipid storage; IDA:FlyBase.
GO; GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; IBA:GO_Central.
GO; GO:0016192; P:vesicle-mediated transport; NAS:FlyBase.
Gene3D; 2.130.10.10; -; 1.
InterPro; IPR016391; Coatomer_asu.
InterPro; IPR010714; Coatomer_asu_C.
InterPro; IPR006692; Coatomer_WD-assoc_reg.
InterPro; IPR020472; G-protein_beta_WD-40_rep.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
InterPro; IPR001680; WD40_repeat.
InterPro; IPR019775; WD40_repeat_CS.
InterPro; IPR017986; WD40_repeat_dom.
InterPro; IPR036322; WD40_repeat_dom_sf.
Pfam; PF04053; Coatomer_WDAD; 1.
Pfam; PF06957; COPI_C; 1.
Pfam; PF00400; WD40; 5.
PIRSF; PIRSF003354; Coatomer_alpha_subunit; 1.
PRINTS; PR00320; GPROTEINBRPT.
SMART; SM00320; WD40; 7.
SUPFAM; SSF50978; SSF50978; 3.
PROSITE; PS00678; WD_REPEATS_1; 1.
PROSITE; PS50082; WD_REPEATS_2; 5.
PROSITE; PS50294; WD_REPEATS_REGION; 1.
1: Evidence at protein level;
Capsid protein {ECO:0000313|EMBL:AAF47534.1};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Cytoplasm {ECO:0000256|PIRNR:PIRNR003354};
ER-Golgi transport {ECO:0000256|PIRNR:PIRNR003354};
Golgi apparatus {ECO:0000256|PIRNR:PIRNR003354};
Membrane {ECO:0000256|PIRNR:PIRNR003354};
Protein transport {ECO:0000256|PIRNR:PIRNR003354};
Proteomics identification {ECO:0000213|PeptideAtlas:Q9W0B8};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Transport {ECO:0000256|PIRNR:PIRNR003354};
Virion {ECO:0000313|EMBL:AAF47534.1};
WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221}.
DOMAIN 5 330 WD_REPEATS_REGION.
{ECO:0000259|PROSITE:PS50294}.
REPEAT 47 88 WD. {ECO:0000256|PROSITE-
ProRule:PRU00221}.
REPEAT 89 130 WD. {ECO:0000256|PROSITE-
ProRule:PRU00221}.
REPEAT 131 165 WD. {ECO:0000256|PROSITE-
ProRule:PRU00221}.
REPEAT 204 238 WD. {ECO:0000256|PROSITE-
ProRule:PRU00221}.
REPEAT 248 289 WD. {ECO:0000256|PROSITE-
ProRule:PRU00221}.
SEQUENCE 1234 AA; 139329 MW; 0815208E1EC82981 CRC64;
MLTNFESKSA RVKGLSFHPK RPWILVSLHS GVIQLWDYRM HTLLEKFDEH DGPVRGVAFH
QQMPLFVSGG DDYKIKVWNY KQRRCIFTLL AHLDYVRTVA FHHEYPWILS ASDDQTIRIW
NWQSRNCICV LTGHNHYVMC AQFHPTEDQI VSASLDQTVR VWDISGLRKK NVAPGPGGLD
DHLKGHPGAT DLFGQADAVV KHVLEGHDRG VNWASFHPTL PLIVSGADDR LVKLWRMNEY
KAWEVDTCRG HYNNVSSVLF HPRQDLILSN GEDRSIRVWD MTKRQCLFTF RRDNERFWIL
TAHPTLNLFA AGHDGGMVVF KLERERPAYA VHGNILYYVK ERFLRKLDFT TTKDTVVMQL
RPGKSPVYSM SYNPALNAVL ICTRTNNLEN STYDLCQIPK DTESQSESDS KRSSGITAIW
VARNRFAVLD RNQQLVIKNF KNEVTKKLPT FCEEIFYAGT GMLLIRDPEF VTLYEVQRLV
SVGSIKLAKC RYVVWSPDMS LVALLCKHSV TICDRRLQYL CTVQENCRVK SGAWDESGVF
IYTTSNHIKY AITNGDHGII RTLDLPIYLT RVKGNQVFCL DRECRTRVLH IDPTEYKFKL
ALIQRKYDEV LHMVRNARLV GQSIIAYLQQ KGYPEVALHF VKDEKTRFGL ALECGNIEIA
LEAAKALDDK DCWDRLGQSA LLQGNHQVVE MCYQRTKNFD KLSFLYLITG NLEKLKKMNK
IAEIRKDVSA QYQGALLLGD VKERVNILKN CGQLSLAYLT AATHGFDELT ESLGESITSQ
GNSLPEVNPN AQLLQPPVPI QQLETNWPLL SVSKGFFEGA MVTRAGSSAT ARQALNINAD
AALLDEHNGG GDGWGADADL GLDEDGDDEM HDALSNDGDG GAGGEEGAGW DVGDDDLVVP
EELASKIKAS ALDSNYYAAP NKGLSPAQQW ANNSPLVLDH VKAGSFETAF RLLHDQLGVV
NFQPFKTLFL QNYACSRTSY TANPNLQSLS GYPLRNYSET NIKLQRPAVG IKLNDLVARL
QAGYQLTTSG KFSEAVEKFH SILISIPLLV VDTKLDAAEA QQLLRICAEY IVGLKMETVR
KGMPKSTLEE QKRLCEMAAY FTHCKLQPVH QILTLRTALN MFFKLKNYKT AASFARRLLE
LAPRPDVAQQ VRKILQACEV NPVDEHQLQY EEFNPFTICG ISWKPLYRGK PEVTCPFCSS
SFDPQFKGNL CTVCEVSQIG KDSIGLRISN LQFR


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