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Colony stimulating factor 2 (Granulocyte-macrophage) (Granulocyte-macrophage colony stimulating factor 2)

 Q5SX78_MOUSE            Unreviewed;       141 AA.
Q5SX78;
10-MAY-2005, integrated into UniProtKB/TrEMBL.
10-MAY-2005, sequence version 1.
23-MAY-2018, entry version 121.
SubName: Full=Colony stimulating factor 2 (Granulocyte-macrophage) {ECO:0000313|EMBL:EDL33540.1};
SubName: Full=Granulocyte-macrophage colony stimulating factor 2 {ECO:0000313|EMBL:ABY66391.1};
Name=Csf2 {ECO:0000313|EMBL:ABY66391.1, ECO:0000313|MGI:MGI:1339752};
ORFNames=mCG_13784 {ECO:0000313|EMBL:EDL33540.1};
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1] {ECO:0000313|EMBL:BAE20692.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE20692.1};
TISSUE=Lung {ECO:0000313|EMBL:BAE20692.1};
PubMed=10349636; DOI=10.1016/S0076-6879(99)03004-9;
Carninci P., Hayashizaki Y.;
"High-efficiency full-length cDNA cloning.";
Methods Enzymol. 303:19-44(1999).
[2] {ECO:0000313|EMBL:BAE20692.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE20692.1};
TISSUE=Lung {ECO:0000313|EMBL:BAE20692.1};
PubMed=11042159; DOI=10.1101/gr.145100;
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
"Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes.";
Genome Res. 10:1617-1630(2000).
[3] {ECO:0000313|EMBL:BAE20692.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE20692.1};
TISSUE=Lung {ECO:0000313|EMBL:BAE20692.1};
PubMed=11076861; DOI=10.1101/gr.152600;
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M.,
Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A.,
Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K.,
Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M.,
Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J.,
Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
"RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer.";
Genome Res. 10:1757-1771(2000).
[4] {ECO:0000313|EMBL:BAE20692.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE20692.1};
TISSUE=Lung {ECO:0000313|EMBL:BAE20692.1};
PubMed=11217851; DOI=10.1038/35055500;
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium;
"Functional annotation of a full-length mouse cDNA collection.";
Nature 409:685-690(2001).
[5] {ECO:0000313|EMBL:BAE20692.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE20692.1};
TISSUE=Lung {ECO:0000313|EMBL:BAE20692.1};
Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P.,
Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W.,
Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T.,
Hori F., Imotani K., Ishii Y., Itoh M., Kagawa I., Kasukawa T.,
Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S.,
Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M.,
Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y.,
Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H.,
Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M.,
Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T.,
Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.;
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases.
[6] {ECO:0000313|EMBL:BAE20692.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE20692.1};
TISSUE=Lung {ECO:0000313|EMBL:BAE20692.1};
PubMed=12466851; DOI=10.1038/nature01266;
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team;
"Analysis of the mouse transcriptome based on functional annotation of
60,770 full-length cDNAs.";
Nature 420:563-573(2002).
[7] {ECO:0000313|EMBL:EDL33540.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Mixed {ECO:0000313|EMBL:EDL33540.1};
PubMed=12040188; DOI=10.1126/science.1069193;
Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R.,
Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A.,
Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.,
Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K.,
Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J.,
Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R.,
Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H.,
Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A.,
Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A.,
Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C.,
Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C.,
Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B.,
Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E.,
Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R.,
Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C.,
Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L.,
Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S.,
Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L.,
Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R.,
Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R.,
Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J.,
Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L.,
Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C.,
Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A.,
Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H.,
Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L.,
Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M.,
Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K.,
Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S.,
Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J.,
Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G.,
Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.;
"A comparison of whole-genome shotgun-derived mouse chromosome 16 and
the human genome.";
Science 296:1661-1671(2002).
[8] {ECO:0000313|EMBL:BAE20692.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE20692.1};
TISSUE=Lung {ECO:0000313|EMBL:BAE20692.1};
The FANTOM Consortium;
Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group);
"The Transcriptional Landscape of the Mammalian Genome.";
Science 309:1559-1563(2005).
[9] {ECO:0000313|EMBL:BAE20692.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6J {ECO:0000313|EMBL:BAE20692.1};
TISSUE=Lung {ECO:0000313|EMBL:BAE20692.1};
PubMed=16141073; DOI=10.1126/science.1112009;
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium;
"Antisense Transcription in the Mammalian Transcriptome.";
Science 309:1564-1566(2005).
[10] {ECO:0000313|EMBL:EDL33540.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Mixed {ECO:0000313|EMBL:EDL33540.1};
Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[11] {ECO:0000313|EMBL:ABY66391.1}
NUCLEOTIDE SEQUENCE.
STRAIN=C57BL/6 {ECO:0000313|EMBL:ABY66391.1};
Xu L.-H., Shi H.-J., Lu H.-S., Han J., He X.-H.;
"Cloning of mouse cDNA encoding GM-CSF from the spleen.";
Submitted (DEC-2007) to the EMBL/GenBank/DDBJ databases.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; EU366957; ABY66391.1; -; mRNA.
EMBL; AK053196; BAE20692.1; -; mRNA.
EMBL; CH466575; EDL33540.1; -; Genomic_DNA.
RefSeq; NP_034099.2; NM_009969.4.
UniGene; Mm.4922; -.
SMR; Q5SX78; -.
GeneID; 12981; -.
KEGG; mmu:12981; -.
CTD; 1437; -.
MGI; MGI:1339752; Csf2.
eggNOG; ENOG410JBQ7; Eukaryota.
eggNOG; ENOG411164J; LUCA.
HOVERGEN; HBG000532; -.
KO; K05427; -.
OMA; MWLQNLL; -.
OrthoDB; EOG091G0XFL; -.
ChiTaRS; Csf2; mouse.
Bgee; ENSMUSG00000018916; -.
ExpressionAtlas; Q5SX78; baseline and differential.
GO; GO:0005615; C:extracellular space; IEA:Ensembl.
GO; GO:0043231; C:intracellular membrane-bounded organelle; IEA:Ensembl.
GO; GO:0005125; F:cytokine activity; IEA:Ensembl.
GO; GO:0005129; F:granulocyte macrophage colony-stimulating factor receptor binding; IEA:InterPro.
GO; GO:0008083; F:growth factor activity; IEA:InterPro.
GO; GO:0097011; P:cellular response to granulocyte macrophage colony-stimulating factor stimulus; IEA:Ensembl.
GO; GO:0001892; P:embryonic placenta development; IEA:Ensembl.
GO; GO:0006955; P:immune response; IEA:InterPro.
GO; GO:0030224; P:monocyte differentiation; IEA:Ensembl.
GO; GO:0043011; P:myeloid dendritic cell differentiation; IEA:Ensembl.
GO; GO:0045918; P:negative regulation of cytolysis; IEA:Ensembl.
GO; GO:2001240; P:negative regulation of extrinsic apoptotic signaling pathway in absence of ligand; IEA:Ensembl.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IEA:Ensembl.
GO; GO:0030223; P:neutrophil differentiation; IEA:Ensembl.
GO; GO:0008284; P:positive regulation of cell proliferation; IEA:Ensembl.
GO; GO:0010628; P:positive regulation of gene expression; IEA:Ensembl.
GO; GO:0032747; P:positive regulation of interleukin-23 production; IEA:Ensembl.
GO; GO:0010744; P:positive regulation of macrophage derived foam cell differentiation; IEA:Ensembl.
GO; GO:0071803; P:positive regulation of podosome assembly; IEA:Ensembl.
GO; GO:0042531; P:positive regulation of tyrosine phosphorylation of STAT protein; IEA:Ensembl.
CDD; cd00040; CSF2; 1.
InterPro; IPR009079; 4_helix_cytokine-like_core.
InterPro; IPR000773; GM_colony-stim-fac.
PANTHER; PTHR10059; PTHR10059; 1.
Pfam; PF01109; GM_CSF; 1.
PRINTS; PR00693; GMCSFACTOR.
ProDom; PD007349; GM_colony-stim-fac; 1.
SMART; SM00040; CSF2; 1.
SUPFAM; SSF47266; SSF47266; 1.
PROSITE; PS00702; GM_CSF; 1.
2: Evidence at transcript level;
Signal {ECO:0000256|SAM:SignalP}.
SIGNAL 1 17 {ECO:0000256|SAM:SignalP}.
CHAIN 18 141 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5010844583.
SEQUENCE 141 AA; 16091 MW; 209C7CBB4FF77349 CRC64;
MWLQNLLFLG IVVYSLSAPT RSPITVTRPW KHVEAIKEAL NLLDDMPVTL NEEVEVVSNE
FSFKKLTCVQ TRLKIFEQGL RGNFTKLKGA LNMTASYYQT YCPPTPETDC ETQVTTYADF
IDSLKTFLTD IPFECKKPGQ K


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