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Ctcf protein (Fragment)

 Q5XJR2_DANRE            Unreviewed;       425 AA.
Q5XJR2;
23-NOV-2004, integrated into UniProtKB/TrEMBL.
23-NOV-2004, sequence version 1.
25-OCT-2017, entry version 60.
SubName: Full=Ctcf protein {ECO:0000313|EMBL:AAH83236.1};
Flags: Fragment;
Name=ctcf {ECO:0000313|EMBL:AAH83236.1,
ECO:0000313|ZFIN:ZDB-GENE-040624-5};
Danio rerio (Zebrafish) (Brachydanio rerio).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
Cyprinidae; Danio.
NCBI_TaxID=7955 {ECO:0000313|EMBL:AAH83236.1};
[1] {ECO:0000313|EMBL:AAH83236.1}
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Embryo {ECO:0000313|EMBL:AAH83236.1};
NIH - Zebrafish Gene Collection (ZGC) project;
Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
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EMBL; BC083236; AAH83236.1; -; mRNA.
UniGene; Dr.53867; -.
ProteinModelPortal; Q5XJR2; -.
SMR; Q5XJR2; -.
PaxDb; Q5XJR2; -.
ZFIN; ZDB-GENE-040624-5; ctcf.
eggNOG; KOG1721; Eukaryota.
eggNOG; COG5048; LUCA.
HOGENOM; HOG000276534; -.
HOVERGEN; HBG000350; -.
GO; GO:0003682; F:chromatin binding; IDA:ZFIN.
GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO; GO:0010468; P:regulation of gene expression; IDA:ZFIN.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IMP:ZFIN.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
SMART; SM00355; ZnF_C2H2; 3.
SUPFAM; SSF57667; SSF57667; 2.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 3.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 3.
2: Evidence at transcript level;
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00042};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00042};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00042}.
DOMAIN 306 333 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 334 361 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
DOMAIN 362 390 C2H2-type. {ECO:0000259|PROSITE:PS50157}.
NON_TER 425 425 {ECO:0000313|EMBL:AAH83236.1}.
SEQUENCE 425 AA; 47537 MW; A2AD471ACC60D8EC CRC64;
MEGGPTEAVV EDAGDAFKAK ECKTYQRRRE DEEVGAELLQ AAVIEQAQAE VEPVVEAQQQ
LVESVVSVNS SVDMMMMETL DPALLQMKTE VMEAAVGAPV AVAGAAHEAT VTTVDDTQII
TLQVVNMEEQ QLGLGELQLV QVPVSAVPVT AATVEELQGT LVDATAMPKD GEPVICHTLP
LPEGFQVVKV GANGEVETVE QDELQPQDDQ PPHQEEEEEM AEPQNEDPAW SKDPDYTPPV
KKVKKTKKSK LRYNTEGDKD MDVSVYDFEE EQQEGLLSEV NAEKVVGNMK PPKPTKIKKK
GVKKTFQCEL CSYTCPRRSN LDRHMKSHTD ERPHKCHLCG RAFRTVTLLR NHLNTHTGTR
PHKCTDCDMA FVTSGELVRH RRYKHTHEKP FKCSMCDYAS VEVRWCRECI AVQLIKKYCP
KKKKK


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