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Cyclic nucleotide-gated cation channel beta-1 (240 kDa protein of rod photoreceptor CNG-channel) (Cyclic nucleotide-gated cation channel 4) (CNG channel 4) (CNG-4) (CNG4) (Cyclic nucleotide-gated cation channel gamma) (Cyclic nucleotide-gated cation channel modulatory subunit) (Cyclic nucleotide-gated channel beta-1) (CNG channel beta-1) (Glutamic acid-rich protein) (GARP)

 CNGB1_BOVIN             Reviewed;        1394 AA.
Q28181; Q03861; Q28082;
01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
25-APR-2018, entry version 124.
RecName: Full=Cyclic nucleotide-gated cation channel beta-1;
AltName: Full=240 kDa protein of rod photoreceptor CNG-channel;
AltName: Full=Cyclic nucleotide-gated cation channel 4;
Short=CNG channel 4;
Short=CNG-4;
Short=CNG4;
AltName: Full=Cyclic nucleotide-gated cation channel gamma;
AltName: Full=Cyclic nucleotide-gated cation channel modulatory subunit;
AltName: Full=Cyclic nucleotide-gated channel beta-1;
Short=CNG channel beta-1;
AltName: Full=Glutamic acid-rich protein;
Short=GARP;
Name=CNGB1; Synonyms=CNCG4;
Bos taurus (Bovine).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia;
Pecora; Bovidae; Bovinae; Bos.
NCBI_TaxID=9913;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM CNG4A), AND PARTIAL PROTEIN
SEQUENCE.
PubMed=7546742; DOI=10.1016/0896-6273(95)90151-5;
Koerschen H.G., Illing M., Seifert R., Sesti F., Williams A.,
Gotzes S., Colville C., Mueller F., Dose A., Godde M., Molday L.,
Kaupp U.B., Molday R.S.;
"A 240 kDa protein represents the complete beta subunit of the cyclic
nucleotide-gated channel from rod photoreceptor.";
Neuron 15:627-636(1995).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM CNG4C), AND ALTERNATIVE SPLICING
(ISOFORMS CNG4D AND CNG4E).
TISSUE=Testis;
PubMed=8626431; DOI=10.1074/jbc.271.11.6349;
Biel M., Zong X., Ludwig A., Sautter A., Hofmann F.;
"Molecular cloning and expression of the modulatory subunit of the
cyclic nucleotide-gated cation channel.";
J. Biol. Chem. 271:6349-6355(1996).
[3]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM GARP1).
TISSUE=Retina;
PubMed=2014230; DOI=10.1073/pnas.88.8.3116;
Sugimoto Y., Yatsunami K., Tsujimoto M., Khorana H.G., Ichikawa A.;
"The amino acid sequence of a glutamic acid-rich protein from bovine
retina as deduced from the cDNA sequence.";
Proc. Natl. Acad. Sci. U.S.A. 88:3116-3119(1991).
[4]
ALTERNATIVE SPLICING (ISOFORMS GARP1 AND GARP2).
Cote R.H.;
Unpublished observations (MAY-2009).
[5]
SUBUNIT.
PubMed=21878911; DOI=10.1038/ncomms1466;
Shuart N.G., Haitin Y., Camp S.S., Black K.D., Zagotta W.N.;
"Molecular mechanism for 3:1 subunit stoichiometry of rod cyclic
nucleotide-gated ion channels.";
Nat. Commun. 2:457-457(2011).
-!- FUNCTION: Subunit of cyclic nucleotide-gated (CNG) channels,
nonselective cation channels, which play important roles in both
visual and olfactory signal transduction. When associated with
CNGA1, it is involved in the regulation of ion flow into the rod
photoreceptor outer segment (ROS), in response to light-induced
alteration of the levels of intracellular cGMP (By similarity).
{ECO:0000250}.
-!- SUBUNIT: Tetramer formed of three CNGA1 and one CNGB1 modulatory
subunits. {ECO:0000269|PubMed:21878911}.
-!- INTERACTION:
Self; NbExp=12; IntAct=EBI-6979031, EBI-6979031;
O02698:-; NbExp=3; IntAct=EBI-6979031, EBI-7079806;
P04695:GNAT1; NbExp=4; IntAct=EBI-6979031, EBI-7052221;
P55203:GUCY2D; NbExp=5; IntAct=EBI-6979031, EBI-6943076;
Q32LM8:NRM; NbExp=4; IntAct=EBI-6979031, EBI-7079707;
-!- SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=6;
Comment=Isoform CNG4D is the most frequent isoform
(CNG4D:CNG4C:CNG4E = 20:2:1) in testis.;
Name=CNG4A;
IsoId=Q28181-6; Sequence=Displayed;
Name=CNG4C;
IsoId=Q28181-1; Sequence=VSP_037919, VSP_037920, VSP_037913;
Name=CNG4D;
IsoId=Q28181-2; Sequence=VSP_037919, VSP_037920, VSP_037916;
Name=CNG4E;
IsoId=Q28181-3; Sequence=VSP_037919, VSP_037920, VSP_037915;
Name=GARP1;
IsoId=Q28181-4; Sequence=VSP_037912, VSP_037913, VSP_037914,
VSP_037917, VSP_037918;
Note=In the rod cells, the Cngb1 locus encodes the cyclic
nucleotide-gated cation channel beta-1 subunit and several
glutamic-acid-rich proteins (GARPs).;
Name=GARP2;
IsoId=Q28181-5; Sequence=VSP_037910, VSP_037911;
Note=In the rod cells, the Cngb1 locus encodes the cyclic
nucleotide-gated cation channel beta-1 subunit and several
glutamic-acid-rich proteins (GARPs).;
-!- TISSUE SPECIFICITY: Retina, testis, kidney, heart and brain.
-!- SIMILARITY: Belongs to the cyclic nucleotide-gated cation channel
(TC 1.A.1.5) family. CNGB1 subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; X89626; CAA61769.1; -; mRNA.
EMBL; X94707; CAA64367.1; -; mRNA.
EMBL; M61185; AAA30536.1; -; mRNA.
PIR; A40437; A40437.
RefSeq; NP_001129112.1; NM_001135640.1. [Q28181-4]
RefSeq; NP_001129113.1; NM_001135641.1. [Q28181-5]
RefSeq; NP_851362.1; NM_181019.2. [Q28181-6]
UniGene; Bt.5064; -.
DisProt; DP00768; -.
ProteinModelPortal; Q28181; -.
DIP; DIP-47448N; -.
IntAct; Q28181; 9.
MINT; Q28181; -.
STRING; 9913.ENSBTAP00000032365; -.
PaxDb; Q28181; -.
PRIDE; Q28181; -.
GeneID; 281702; -.
KEGG; bta:281702; -.
CTD; 1258; -.
eggNOG; KOG0499; Eukaryota.
eggNOG; ENOG410ZJ5U; LUCA.
HOGENOM; HOG000231425; -.
HOVERGEN; HBG051038; -.
InParanoid; Q28181; -.
Proteomes; UP000009136; Unplaced.
GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
GO; GO:0042622; C:photoreceptor outer segment membrane; IDA:CAFA.
GO; GO:0032991; C:protein-containing complex; IDA:UniProtKB.
GO; GO:0030552; F:cAMP binding; IEA:UniProtKB-KW.
GO; GO:0042802; F:identical protein binding; IPI:IntAct.
GO; GO:0005221; F:intracellular cyclic nucleotide activated cation channel activity; IEA:InterPro.
GO; GO:0042803; F:protein homodimerization activity; IDA:CAFA.
GO; GO:0005249; F:voltage-gated potassium channel activity; IBA:GO_Central.
GO; GO:0010628; P:positive regulation of gene expression; IDA:UniProtKB.
GO; GO:0051289; P:protein homotetramerization; IDA:CAFA.
GO; GO:0042391; P:regulation of membrane potential; IBA:GO_Central.
GO; GO:0050896; P:response to stimulus; IEA:UniProtKB-KW.
GO; GO:0007608; P:sensory perception of smell; IEA:UniProtKB-KW.
GO; GO:0007601; P:visual perception; IEA:UniProtKB-KW.
CDD; cd00038; CAP_ED; 1.
Gene3D; 2.60.120.10; -; 1.
InterPro; IPR032944; CNGB1.
InterPro; IPR018490; cNMP-bd-like.
InterPro; IPR018488; cNMP-bd_CS.
InterPro; IPR000595; cNMP-bd_dom.
InterPro; IPR014710; RmlC-like_jellyroll.
PANTHER; PTHR10217:SF386; PTHR10217:SF386; 2.
Pfam; PF00027; cNMP_binding; 1.
SMART; SM00100; cNMP; 1.
SUPFAM; SSF51206; SSF51206; 1.
PROSITE; PS00888; CNMP_BINDING_1; 1.
PROSITE; PS00889; CNMP_BINDING_2; 1.
PROSITE; PS50042; CNMP_BINDING_3; 1.
1: Evidence at protein level;
Alternative splicing; cAMP; cAMP-binding; Complete proteome;
Direct protein sequencing; Ion channel; Ion transport;
Ligand-gated ion channel; Membrane; Nucleotide-binding; Olfaction;
Reference proteome; Sensory transduction; Transmembrane;
Transmembrane helix; Transport; Vision.
CHAIN 1 1394 Cyclic nucleotide-gated cation channel
beta-1.
/FTId=PRO_0000005555.
TOPO_DOM 1 770 Cytoplasmic. {ECO:0000255}.
TRANSMEM 771 789 Helical; Name=H1. {ECO:0000255}.
TOPO_DOM 790 803 Extracellular. {ECO:0000255}.
TRANSMEM 804 822 Helical; Name=H2. {ECO:0000255}.
TOPO_DOM 823 847 Cytoplasmic. {ECO:0000255}.
TRANSMEM 848 867 Helical; Name=H3. {ECO:0000255}.
TOPO_DOM 868 904 Extracellular. {ECO:0000255}.
TRANSMEM 905 927 Helical; Name=H4. {ECO:0000255}.
TOPO_DOM 928 971 Cytoplasmic. {ECO:0000255}.
TRANSMEM 972 991 Helical; Name=H5. {ECO:0000255}.
TOPO_DOM 992 1075 Extracellular. {ECO:0000255}.
TRANSMEM 1076 1096 Helical; Name=H6. {ECO:0000255}.
TOPO_DOM 1097 1394 Cytoplasmic. {ECO:0000255}.
NP_BIND 1084 1222 cAMP. {ECO:0000250}.
MOTIF 682 692 IQ-like.
BINDING 1144 1144 cAMP. {ECO:0000255}.
BINDING 1156 1156 cAMP. {ECO:0000255}.
VAR_SEQ 1 456 Missing (in isoform CNG4C, isoform CNG4E
and isoform CNG4D).
{ECO:0000303|PubMed:8626431}.
/FTId=VSP_037919.
VAR_SEQ 292 299 ISILPGEQ -> RVVAAGSL (in isoform GARP2).
{ECO:0000305}.
/FTId=VSP_037910.
VAR_SEQ 300 1394 Missing (in isoform GARP2).
{ECO:0000305}.
/FTId=VSP_037911.
VAR_SEQ 341 341 K -> E (in isoform GARP1).
{ECO:0000303|PubMed:2014230}.
/FTId=VSP_037912.
VAR_SEQ 457 465 EEDEEEEQD -> MRAGQKGRC (in isoform CNG4C,
isoform CNG4E and isoform CNG4D).
{ECO:0000303|PubMed:8626431}.
/FTId=VSP_037920.
VAR_SEQ 482 482 R -> Q (in isoform GARP1 and isoform
CNG4C). {ECO:0000303|PubMed:2014230,
ECO:0000303|PubMed:8626431}.
/FTId=VSP_037913.
VAR_SEQ 499 499 A -> T (in isoform GARP1).
{ECO:0000303|PubMed:2014230}.
/FTId=VSP_037914.
VAR_SEQ 515 532 Missing (in isoform CNG4E).
{ECO:0000305}.
/FTId=VSP_037915.
VAR_SEQ 522 530 Missing (in isoform CNG4D).
{ECO:0000305}.
/FTId=VSP_037916.
VAR_SEQ 572 590 VPATEEHPELQVEDADADS -> GSFQMSPFEALQECEALK
R (in isoform GARP1).
{ECO:0000303|PubMed:2014230}.
/FTId=VSP_037917.
VAR_SEQ 591 1394 Missing (in isoform GARP1).
{ECO:0000303|PubMed:2014230}.
/FTId=VSP_037918.
CONFLICT 1283 1283 S -> A (in Ref. 2; CAA64367).
{ECO:0000305}.
CONFLICT 1289 1289 R -> A (in Ref. 2; CAA64367).
{ECO:0000305}.
CONFLICT 1336 1336 D -> E (in Ref. 2; CAA64367).
{ECO:0000305}.
CONFLICT 1338 1338 A -> AA (in Ref. 2; CAA64367).
{ECO:0000305}.
SEQUENCE 1394 AA; 155065 MW; EE6DA559BE3744A7 CRC64;
MLGWVQRVLP QPPGTPQKTK QEEEGTEPEP ELEPKPETAP EETELEEVSL PPEEPCVGKE
VAAVTLGPQG TQETALTPPT SLQAQVSVAP EAHSSPRGWV LTWLRKGVEK VVPQPAHSSR
PSQNIAAGLE SPDQQAGAQI LGQCGTGGSD EPSEPSRAED PGPGPWLLRW FEQNLEKMLP
QPPKISEGWR DEPTDAALGP EPPGPALEIK PMLQAQESPS LPAPGPPEPE EEPIPEPQPT
IQASSLPPPQ DSARLMAWIL HRLEMALPQP VIRGKGGEQE SDAPVTCDVQ TISILPGEQE
ESHLILEEVD PHWEEDEHQE GSTSTSPRTS EAAPADEEKG KVVEQTPREL PRIQEEKEDE
EEEKEDGEEE EEEGREKEEE EGEEKEEEEG REKEEEEGEK KEEEGREKEE EEGGEKEDEE
GREKEEEEGR GKEEEEGGEK EEEEGRGKEE VEGREEEEDE EEEQDHSVLL DSYLVPQSEE
DRSEESETQD QSEVGGAQAQ GEVGGAQALS EESETQDQSE VGGAQDQSEV GGAQAQGEVG
GAQEQDGVGG AQDQSTSHQE LQEEALADSS GVPATEEHPE LQVEDADADS RPLIAEENPP
SPVQLPLSPA KSDTLAVPGS ATGSLRKRLP SQDDEAEELK MLSPAASPVV AWSDPTSPQG
TDDQDRATST ASQNSAIIND RLQELVKLFK ERTEKVKEKL IDPDVTSDEE SPKPSPAKKA
PEPAPEVKPA EAGQVEEEHY CEMLCCKFKR RPWKKYQFPQ SIDPLTNLMY ILWLFFVVLA
WNWNCWLIPV RWAFPYQTPD NIHLWLLMDY LCDLIYLLDI TVFQMRLQFV RGGDIITDKK
EMRNNYVKSQ RFKMDMLCLL PLDLLYLKFG VNPLLRLPRC LKYMAFFEFN NRLESILSKA
YVYRVIRTTA YLLYSLHLNS CLYYWASAYE GLGSTHWVYD GVGNSYIRCY YWAVKTLITI
GGLPDPRTLF EIVFQGLNYF TGVFAFSVMI GQMRDVVGAA TAGQTYYRSC MDSTVKYMNF
YKIPRSVQNR VKTWYEYTWH SQGMLDESEL MVQLPDKMRL DLAIDVNYSI VSKVALFQGC
DRQMIFDMLK RLRSVVYLPN DYVCKKGEIG REMYIIQAGQ VQVLGGPDGK SVLVTLKAGS
VFGEISLLAV GGGNRRTANV VAHGFTNLFI LDKKDLNEIL VHYPESQKLL RKKARRMLRN
NNKPKEKSVL ILPPRAGTPK LFNAALAAAG KMGAKGGRGG RLALLRARLK ELAALEAAAR
QQQLLEQAKS SEDAAVGEEG SASPEQPPRP EPPAPEAPAP EPTAPEPLAP EAPAPEAPAP
SSPPPASQER PEGDKDAARP EEHPVRIHVT LGPDPSEQIL LVEVPEKQEE KEKKEEETEE
KEEGEEARKE KEEE


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